Wall clock time and date at job start Tue Mar 31 2020 08:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86808 * 120.00062 * 2 1 4 4 H 1.48499 * 109.46970 * 240.00045 * 3 2 1 5 5 H 1.48498 * 109.46882 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47173 * 119.99586 * 3 2 1 7 7 C 1.39900 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00351 * 175.56403 * 7 2 1 9 9 C 1.41156 * 120.00118 * 355.55995 * 7 2 1 10 10 C 1.40870 * 120.16342 * 214.78636 * 9 7 2 11 11 C 1.36378 * 119.82531 * 180.02562 * 10 9 7 12 12 C 1.39475 * 120.16687 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83085 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99875 * 35.28758 * 13 12 11 15 15 O 1.21272 * 120.00013 * 355.70208 * 14 13 12 16 16 C 1.50699 * 119.99679 * 175.70972 * 14 13 12 17 17 N 1.46504 * 109.46831 * 179.97438 * 16 14 13 18 18 C 1.47089 * 125.56063 * 90.00175 * 17 16 14 19 19 C 1.54093 * 103.77583 * 180.02562 * 18 17 16 20 20 O 1.45693 * 104.13147 * 359.92669 * 19 18 17 21 21 C 1.34000 * 125.55722 * 270.01986 * 17 16 14 22 22 O 1.21509 * 123.07675 * 0.02985 * 21 17 16 23 23 C 1.39475 * 120.33862 * 0.24974 * 12 11 10 24 24 C 1.36375 * 120.16801 * 359.48581 * 23 12 11 25 25 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.08935 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.91371 * 179.97438 * 11 10 9 28 28 H 0.97002 * 120.00148 * 215.27923 * 13 12 11 29 29 H 1.09000 * 109.47716 * 59.99477 * 16 14 13 30 30 H 1.09003 * 109.47175 * 299.99423 * 16 14 13 31 31 H 1.08994 * 110.56858 * 61.44541 * 18 17 16 32 32 H 1.08996 * 110.56448 * 298.58928 * 18 17 16 33 33 H 1.08995 * 110.52322 * 118.63017 * 19 18 17 34 34 H 1.09003 * 110.51808 * 241.22540 * 19 18 17 35 35 H 1.08003 * 119.92063 * 179.74932 * 23 12 11 36 36 H 1.07999 * 120.09360 * 180.25472 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7465 0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0729 9 6 1.3058 -2.4322 0.0935 10 6 1.8651 -3.5186 0.7946 11 6 1.1805 -4.6950 0.8807 12 6 -0.0699 -4.8241 0.2765 13 7 -0.7625 -6.0286 0.3684 14 6 -0.6808 -6.7689 1.4917 15 8 0.0564 -6.4261 2.3916 16 6 -1.5053 -8.0228 1.6293 17 7 -1.2390 -8.6420 2.9301 18 6 -1.9722 -8.3660 4.1750 19 6 -1.2870 -9.2750 5.2136 20 8 -0.2509 -9.9634 4.4552 21 6 -0.2876 -9.5520 3.1798 22 8 0.4729 -9.9672 2.3279 23 6 -0.6276 -3.7549 -0.4242 24 6 0.0425 -2.5705 -0.5144 25 1 -0.4850 0.8401 -0.0004 26 1 2.8337 -3.4204 1.2619 27 1 1.6081 -5.5289 1.4174 28 1 -1.3038 -6.3348 -0.3760 29 1 -1.2414 -8.7204 0.8344 30 1 -2.5635 -7.7717 1.5558 31 1 -3.0236 -8.6324 4.0673 32 1 -1.8686 -7.3180 4.4560 33 1 -0.8442 -8.6780 6.0108 34 1 -1.9994 -9.9906 5.6241 35 1 -1.5945 -3.8636 -0.8929 36 1 -0.3923 -1.7420 -1.0537 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873828649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:42 Heat of formation + Delta-G solvation = -96.082691 kcal Electronic energy + Delta-G solvation = -22230.317755 eV Core-core repulsion = 18679.047809 eV Total energy + Delta-G solvation = -3551.269946 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59583 -41.12491 -39.11915 -38.35585 -36.54294 -36.03949 -34.74297 -31.70489 -31.43726 -30.66671 -28.99322 -26.62906 -24.57504 -23.70465 -22.97713 -22.19859 -21.17985 -19.31182 -18.89020 -18.59394 -18.01455 -17.66118 -17.62845 -17.01648 -16.53304 -15.86256 -15.61700 -15.36515 -15.07116 -14.95872 -14.79987 -14.50837 -14.04246 -13.85552 -13.63067 -13.37165 -13.24286 -13.05837 -12.83926 -12.74110 -12.49626 -11.90126 -11.84217 -11.69807 -11.41712 -11.24235 -11.01549 -10.68485 -9.96197 -9.48473 -8.75095 -8.51893 -6.34924 0.76742 1.11229 1.21872 1.39087 1.44900 1.50581 1.60086 1.75401 2.23371 2.35564 2.61781 2.78986 3.34715 3.63041 3.68662 3.77998 4.00595 4.27663 4.38709 4.40306 4.49048 4.49695 4.74652 4.80684 4.91467 5.11205 5.12677 5.19188 5.32608 5.41880 5.67494 5.89056 6.00548 6.11876 6.24000 6.37750 6.64164 6.68234 6.85156 6.95043 6.98077 7.36041 8.40722 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.033974 B = 0.003131 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.971473 B = 8940.787067 C = 9073.858074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.030 3.970 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.502 4.502 8 H 0.070 0.930 9 C 0.070 3.930 10 C -0.225 4.225 11 C -0.099 4.099 12 C 0.022 3.978 13 N -0.639 5.639 14 C 0.473 3.527 15 O -0.572 6.572 16 C 0.138 3.862 17 N -0.611 5.611 18 C 0.064 3.936 19 C 0.037 3.963 20 O -0.348 6.348 21 C 0.641 3.359 22 O -0.576 6.576 23 C -0.113 4.113 24 C -0.158 4.158 25 H 0.286 0.714 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.422 0.578 29 H 0.130 0.870 30 H 0.173 0.827 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.147 0.853 35 H 0.133 0.867 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.908 -12.961 5.495 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.532 4.532 8 H 0.088 0.912 9 C 0.067 3.933 10 C -0.245 4.245 11 C -0.119 4.119 12 C -0.072 4.072 13 N -0.286 5.286 14 C 0.261 3.739 15 O -0.451 6.451 16 C 0.014 3.986 17 N -0.357 5.357 18 C -0.058 4.058 19 C -0.037 4.037 20 O -0.259 6.259 21 C 0.396 3.604 22 O -0.464 6.464 23 C -0.133 4.133 24 C -0.178 4.178 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.261 0.739 29 H 0.148 0.852 30 H 0.190 0.810 31 H 0.159 0.841 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.111 -12.980 5.839 18.688 hybrid contribution 0.640 0.919 -0.147 1.129 sum -11.471 -12.061 5.692 17.591 Atomic orbital electron populations 1.69802 1.08438 1.30090 1.38276 1.26697 0.95854 1.04133 0.91504 0.85171 0.78559 0.75677 0.79749 1.18346 1.18934 1.19182 1.19706 0.94799 0.91508 1.47232 0.91213 1.18012 0.93512 0.92454 0.89297 1.20905 1.01491 0.95756 1.06329 1.20464 0.94126 0.97076 1.00275 1.17289 0.93242 0.87587 1.09104 1.42853 1.48544 1.19693 1.17465 1.22137 0.83563 0.86626 0.81606 1.90694 1.40626 1.71851 1.41933 1.21350 1.02372 0.90849 0.84043 1.47601 1.34907 1.41486 1.11694 1.23208 0.99232 1.01820 0.81512 1.24764 0.88676 0.96257 0.93988 1.87313 1.55633 1.63018 1.19896 1.18742 0.80470 0.78967 0.82264 1.90982 1.45536 1.63771 1.46157 1.20583 0.99494 0.91785 1.01444 1.21201 0.97304 0.96685 1.02653 0.90348 0.89226 0.88471 0.73945 0.85235 0.80958 0.84145 0.89362 0.86707 0.83522 0.84960 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.74 10.60 21.82 0.23 -43.51 16 2 C 0.03 1.56 5.42 85.24 0.46 2.02 16 3 Si 0.99 39.17 29.56 68.60 2.03 41.20 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 6 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.50 -27.94 9.02 23.39 0.21 -27.73 16 8 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16 9 C 0.07 3.88 5.55 -21.27 -0.12 3.76 16 10 C -0.22 -12.09 9.74 22.48 0.22 -11.87 16 11 C -0.10 -4.95 8.61 22.13 0.19 -4.76 16 12 C 0.02 0.92 6.31 38.56 0.24 1.16 16 13 N -0.64 -19.65 5.30 -303.12 -1.61 -21.26 16 14 C 0.47 14.75 7.73 87.66 0.68 15.43 16 15 O -0.57 -24.27 13.85 -3.01 -0.04 -24.31 16 16 C 0.14 2.55 6.49 85.63 0.56 3.11 16 17 N -0.61 -13.26 2.45 -955.39 -2.34 -15.60 16 18 C 0.06 0.76 7.70 86.64 0.67 1.43 16 19 C 0.04 0.42 8.22 72.35 0.59 1.02 16 20 O -0.35 -8.82 11.11 -50.10 -0.56 -9.37 16 21 C 0.64 19.38 8.85 129.91 1.15 20.53 16 22 O -0.58 -22.84 17.54 19.64 0.34 -22.49 16 23 C -0.11 -4.88 9.90 22.13 0.22 -4.66 16 24 C -0.16 -8.16 8.62 22.48 0.19 -7.97 16 25 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 26 H 0.09 4.72 8.06 -2.91 -0.02 4.70 16 27 H 0.10 4.99 6.22 -2.91 -0.02 4.97 16 28 H 0.42 8.69 8.82 -92.71 -0.82 7.88 16 29 H 0.13 2.16 7.93 -2.39 -0.02 2.14 16 30 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.12 6.45 6.13 -2.91 -0.02 6.43 16 Total: -1.00 -84.12 315.97 3.63 -80.48 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.31 Total: 23.38 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.27 Total: -8.52 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -3.72 Total: -80.36 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -0.25 Total: -56.18 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -84.12 3.63 -80.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873828649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.601 kcal (2) G-P(sol) polarization free energy of solvation -84.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds