Wall clock time and date at job start Tue Mar 31 2020 08:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48507 * 109.46950 * 240.00348 * 3 2 1 5 5 H 1.48496 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48487 * 109.46983 * 120.00533 * 3 2 1 7 7 C 1.39899 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00181 * 196.83239 * 7 2 1 9 9 C 1.41156 * 119.99449 * 16.83053 * 7 2 1 10 10 C 1.40872 * 120.15810 * 205.36734 * 9 7 2 11 11 C 1.36380 * 119.82760 * 179.97438 * 10 9 7 12 12 C 1.39476 * 120.16655 * 0.02562 * 11 10 9 13 13 N 1.39248 * 119.83591 * 179.97438 * 12 11 10 14 14 C 1.34769 * 120.00158 * 145.58330 * 13 12 11 15 15 O 1.21582 * 120.00341 * 354.86001 * 14 13 12 16 16 N 1.34774 * 120.00202 * 174.86493 * 14 13 12 17 17 C 1.46498 * 120.00506 * 180.02562 * 16 14 13 18 18 H 1.09006 * 110.58972 * 36.28441 * 17 16 14 19 19 C 1.54679 * 110.53875 * 159.02178 * 17 16 14 20 20 C 1.54484 * 101.62798 * 143.11922 * 19 17 16 21 21 O 1.45410 * 105.60379 * 334.69510 * 20 19 17 22 22 C 1.33831 * 111.67576 * 17.04992 * 21 20 19 23 23 O 1.20821 * 124.95327 * 179.20174 * 22 21 20 24 24 C 1.39482 * 120.33442 * 0.25291 * 12 11 10 25 25 C 1.36373 * 120.16842 * 359.47938 * 24 12 11 26 26 H 0.96998 * 120.00224 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.08779 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.91284 * 180.02562 * 11 10 9 29 29 H 0.96996 * 119.99297 * 325.59212 * 13 12 11 30 30 H 0.97003 * 119.99826 * 359.97438 * 16 14 13 31 31 H 1.09001 * 110.99082 * 25.03696 * 19 17 16 32 32 H 1.09002 * 111.03023 * 261.22533 * 19 17 16 33 33 H 1.08992 * 110.21997 * 215.65360 * 20 19 17 34 34 H 1.09005 * 110.21391 * 93.72154 * 20 19 17 35 35 H 1.08004 * 119.91834 * 179.74606 * 24 12 11 36 36 H 1.08001 * 120.08975 * 180.27523 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6963 1.2123 7 6 2.0083 -1.2115 -0.0005 8 1 3.0535 -1.2317 0.2703 9 6 1.3478 -2.4076 -0.3550 10 6 1.8185 -3.6453 0.1257 11 6 1.1749 -4.7967 -0.2206 12 6 0.0537 -4.7509 -1.0490 13 7 -0.5978 -5.9308 -1.3987 14 6 -1.9359 -5.9397 -1.5588 15 8 -2.5850 -4.9428 -1.3076 16 7 -2.5548 -7.0538 -1.9974 17 6 -4.0093 -7.0634 -2.1720 18 1 -4.3581 -6.0967 -2.5354 19 6 -4.4321 -8.1921 -3.1414 20 6 -5.7569 -8.6687 -2.5056 21 8 -5.6606 -8.3237 -1.0962 22 6 -4.6975 -7.4218 -0.8728 23 8 -4.4212 -6.9576 0.2079 24 6 -0.4148 -3.5298 -1.5336 25 6 0.2151 -2.3696 -1.1915 26 1 -0.4850 0.8400 0.0004 27 1 2.6863 -3.6822 0.7675 28 1 1.5343 -5.7462 0.1475 29 1 -0.0885 -6.7463 -1.5269 30 1 -2.0370 -7.8491 -2.1981 31 1 -3.6937 -8.9939 -3.1529 32 1 -4.5987 -7.8030 -4.1459 33 1 -5.8647 -9.7469 -2.6231 34 1 -6.6012 -8.1528 -2.9629 35 1 -1.2811 -3.5026 -2.1779 36 1 -0.1514 -1.4244 -1.5639 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878085726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:15 Heat of formation + Delta-G solvation = -78.409179 kcal Electronic energy + Delta-G solvation = -22224.533160 eV Core-core repulsion = 18674.029595 eV Total energy + Delta-G solvation = -3550.503565 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 10.37 seconds Orbital eigenvalues (eV) -41.32016 -39.67659 -37.54439 -37.37777 -35.12717 -34.31132 -32.96094 -31.58320 -29.43927 -28.93877 -27.47028 -24.81469 -22.99603 -22.06040 -21.24747 -20.76448 -20.01246 -18.27022 -17.49820 -17.36914 -17.22504 -16.71540 -15.96013 -15.29661 -14.90288 -14.59522 -14.39721 -14.00698 -13.87879 -13.78217 -12.99472 -12.92943 -12.69041 -12.57039 -12.01874 -11.83446 -11.73120 -11.47056 -11.07525 -10.95294 -10.85919 -10.69331 -10.46519 -9.98257 -9.85222 -9.53290 -9.23397 -8.98121 -8.66861 -7.46520 -6.93929 -6.66944 -4.23289 1.99080 2.68710 2.75899 3.06319 3.10792 3.12611 3.13921 3.20084 3.54059 3.78878 3.93984 3.98276 4.23484 4.34964 4.60139 4.71374 4.96974 4.99678 5.18545 5.36841 5.75728 6.19868 6.25881 6.41558 6.58662 6.76330 6.85193 7.10083 7.14758 7.32287 7.36128 7.44671 7.66633 7.86840 8.04144 8.10797 8.31681 8.47073 8.68665 8.94445 8.95986 9.12422 10.26001 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.033793 B = 0.003213 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.373611 B = 8713.137512 C = 9048.593559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.105 3.895 10 C -0.214 4.214 11 C -0.105 4.105 12 C 0.012 3.988 13 N -0.663 5.663 14 C 0.695 3.305 15 O -0.560 6.560 16 N -0.735 5.735 17 C 0.111 3.889 18 H 0.133 0.867 19 C -0.162 4.162 20 C 0.056 3.944 21 O -0.349 6.349 22 C 0.461 3.539 23 O -0.426 6.426 24 C -0.085 4.085 25 C -0.154 4.154 26 H 0.281 0.719 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.390 0.610 30 H 0.397 0.603 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 -16.105 -9.873 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.103 3.897 10 C -0.235 4.235 11 C -0.126 4.126 12 C -0.080 4.080 13 N -0.309 5.309 14 C 0.396 3.604 15 O -0.435 6.435 16 N -0.395 5.395 17 C 0.002 3.998 18 H 0.151 0.849 19 C -0.200 4.200 20 C -0.019 4.019 21 O -0.265 6.265 22 C 0.297 3.703 23 O -0.305 6.305 24 C -0.105 4.105 25 C -0.174 4.174 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.223 0.777 30 H 0.232 0.768 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.287 -14.851 -8.939 19.213 hybrid contribution 0.776 -0.085 -0.158 0.796 sum -7.511 -14.935 -9.097 19.032 Atomic orbital electron populations 1.69858 1.07507 1.29323 1.34756 1.25932 0.94728 1.01293 0.92458 0.86367 0.80090 0.80350 0.79874 1.18871 1.20379 1.19066 1.19494 0.97712 0.91212 1.40652 0.90473 1.17649 0.91259 0.92053 0.88777 1.20535 1.03849 0.92485 1.06590 1.20015 0.97072 0.97223 0.98250 1.16957 0.98902 0.84295 1.07840 1.42023 1.04450 1.11996 1.72404 1.15964 0.82438 0.83185 0.78831 1.90980 1.64362 1.32769 1.55377 1.44788 1.05203 1.15335 1.74160 1.21942 0.82375 1.02461 0.93059 0.84907 1.23272 0.97982 0.98323 1.00436 1.23968 0.98119 1.02655 0.77119 1.86794 1.53722 1.56923 1.29044 1.23679 0.78406 0.76577 0.91639 1.90806 1.61852 1.49193 1.28696 1.20407 0.98759 0.91634 0.99740 1.20971 0.98961 0.96615 1.00835 0.90768 0.88641 0.89270 0.77681 0.76792 0.88596 0.87211 0.87501 0.88861 0.88146 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.38 10.95 55.55 0.61 -20.77 16 2 C 0.07 1.91 5.15 -17.34 -0.09 1.82 16 3 Si 0.91 19.09 29.59 -169.99 -5.03 14.06 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -12.48 9.04 -37.85 -0.34 -12.82 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.11 2.89 5.57 -106.80 -0.59 2.29 16 10 C -0.21 -5.34 9.74 -39.26 -0.38 -5.72 16 11 C -0.11 -2.38 9.90 -39.79 -0.39 -2.77 16 12 C 0.01 0.29 6.27 -83.57 -0.52 -0.24 16 13 N -0.66 -12.02 5.31 -14.10 -0.07 -12.10 16 14 C 0.70 12.88 8.25 -86.93 -0.72 12.17 16 15 O -0.56 -13.29 13.80 5.29 0.07 -13.21 16 16 N -0.74 -9.13 5.16 -58.64 -0.30 -9.43 16 17 C 0.11 1.21 3.24 -67.89 -0.22 0.99 16 18 H 0.13 1.59 7.68 -51.93 -0.40 1.19 16 19 C -0.16 -0.78 6.88 -25.07 -0.17 -0.96 16 20 C 0.06 0.28 7.96 37.94 0.30 0.58 16 21 O -0.35 -3.87 10.93 -37.89 -0.41 -4.29 16 22 C 0.46 6.60 8.28 36.31 0.30 6.90 16 23 O -0.43 -8.52 17.97 -18.43 -0.33 -8.85 16 24 C -0.09 -2.18 8.57 -39.79 -0.34 -2.52 16 25 C -0.15 -4.22 8.63 -39.26 -0.34 -4.55 16 26 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 27 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 28 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.39 5.34 8.83 -40.82 -0.36 4.98 16 30 H 0.40 3.33 8.40 -40.82 -0.34 2.99 16 31 H 0.10 0.31 7.80 -51.93 -0.40 -0.09 16 32 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 2.56 6.48 -52.48 -0.34 2.22 16 36 H 0.12 3.38 6.18 -52.49 -0.32 3.06 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -36.84 314.60 -8.08 -44.92 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -3.83 Total: 9.75 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.51 Total: -4.82 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.23 Total: -42.30 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.67 Total: -26.35 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.84 -8.08 -44.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878085726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.493 kcal (2) G-P(sol) polarization free energy of solvation -36.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.37 seconds