Wall clock time and date at job start Tue Mar 31 2020 08:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48507 * 109.46950 * 240.00348 * 3 2 1 5 5 H 1.48496 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48487 * 109.46983 * 120.00533 * 3 2 1 7 7 C 1.39899 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00181 * 196.83239 * 7 2 1 9 9 C 1.41156 * 119.99449 * 16.83053 * 7 2 1 10 10 C 1.40872 * 120.15810 * 205.36734 * 9 7 2 11 11 C 1.36380 * 119.82760 * 179.97438 * 10 9 7 12 12 C 1.39476 * 120.16655 * 0.02562 * 11 10 9 13 13 N 1.39248 * 119.83591 * 179.97438 * 12 11 10 14 14 C 1.34769 * 120.00158 * 145.58330 * 13 12 11 15 15 O 1.21582 * 120.00341 * 354.86001 * 14 13 12 16 16 N 1.34774 * 120.00202 * 174.86493 * 14 13 12 17 17 C 1.46498 * 120.00506 * 180.02562 * 16 14 13 18 18 H 1.09006 * 110.58972 * 36.28441 * 17 16 14 19 19 C 1.54679 * 110.53875 * 159.02178 * 17 16 14 20 20 C 1.54484 * 101.62798 * 143.11922 * 19 17 16 21 21 O 1.45410 * 105.60379 * 334.69510 * 20 19 17 22 22 C 1.33831 * 111.67576 * 17.04992 * 21 20 19 23 23 O 1.20821 * 124.95327 * 179.20174 * 22 21 20 24 24 C 1.39482 * 120.33442 * 0.25291 * 12 11 10 25 25 C 1.36373 * 120.16842 * 359.47938 * 24 12 11 26 26 H 0.96998 * 120.00224 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.08779 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.91284 * 180.02562 * 11 10 9 29 29 H 0.96996 * 119.99297 * 325.59212 * 13 12 11 30 30 H 0.97003 * 119.99826 * 359.97438 * 16 14 13 31 31 H 1.09001 * 110.99082 * 25.03696 * 19 17 16 32 32 H 1.09002 * 111.03023 * 261.22533 * 19 17 16 33 33 H 1.08992 * 110.21997 * 215.65360 * 20 19 17 34 34 H 1.09005 * 110.21391 * 93.72154 * 20 19 17 35 35 H 1.08004 * 119.91834 * 179.74606 * 24 12 11 36 36 H 1.08001 * 120.08975 * 180.27523 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6963 1.2123 7 6 2.0083 -1.2115 -0.0005 8 1 3.0535 -1.2317 0.2703 9 6 1.3478 -2.4076 -0.3550 10 6 1.8185 -3.6453 0.1257 11 6 1.1749 -4.7967 -0.2206 12 6 0.0537 -4.7509 -1.0490 13 7 -0.5978 -5.9308 -1.3987 14 6 -1.9359 -5.9397 -1.5588 15 8 -2.5850 -4.9428 -1.3076 16 7 -2.5548 -7.0538 -1.9974 17 6 -4.0093 -7.0634 -2.1720 18 1 -4.3581 -6.0967 -2.5354 19 6 -4.4321 -8.1921 -3.1414 20 6 -5.7569 -8.6687 -2.5056 21 8 -5.6606 -8.3237 -1.0962 22 6 -4.6975 -7.4218 -0.8728 23 8 -4.4212 -6.9576 0.2079 24 6 -0.4148 -3.5298 -1.5336 25 6 0.2151 -2.3696 -1.1915 26 1 -0.4850 0.8400 0.0004 27 1 2.6863 -3.6822 0.7675 28 1 1.5343 -5.7462 0.1475 29 1 -0.0885 -6.7463 -1.5269 30 1 -2.0370 -7.8491 -2.1981 31 1 -3.6937 -8.9939 -3.1529 32 1 -4.5987 -7.8030 -4.1459 33 1 -5.8647 -9.7469 -2.6231 34 1 -6.6012 -8.1528 -2.9629 35 1 -1.2811 -3.5026 -2.1779 36 1 -0.1514 -1.4244 -1.5639 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878085726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:06 Heat of formation + Delta-G solvation = -105.791510 kcal Electronic energy + Delta-G solvation = -22225.720547 eV Core-core repulsion = 18674.029595 eV Total energy + Delta-G solvation = -3551.690952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 14.23 seconds Orbital eigenvalues (eV) -42.29840 -41.15206 -39.21046 -38.64432 -36.45744 -35.94414 -34.74814 -32.50943 -31.39165 -30.68860 -28.45231 -26.63674 -23.68611 -23.51846 -23.09265 -22.09086 -21.52151 -19.64007 -19.21800 -18.65313 -18.30232 -17.86139 -17.29887 -17.02643 -16.35875 -15.85793 -15.73665 -15.42378 -15.04227 -14.94452 -14.71161 -14.48438 -13.95807 -13.73935 -13.49542 -13.35463 -13.21961 -12.77599 -12.71019 -12.48460 -12.30971 -11.92557 -11.77036 -11.73319 -11.45808 -11.29070 -11.07325 -10.53172 -10.17234 -9.44090 -8.83488 -8.58665 -6.25225 0.85374 0.91436 1.15386 1.38378 1.49021 1.52630 1.64898 2.07052 2.22167 2.24224 2.77247 2.95317 3.15482 3.36439 3.75565 3.82368 3.92736 4.32883 4.44028 4.47328 4.69227 4.85922 4.90055 4.97606 5.09217 5.17437 5.23551 5.30690 5.44273 5.65273 5.73535 5.78358 6.09097 6.12482 6.15014 6.36710 6.39098 6.69589 6.94385 7.03212 7.09615 7.62166 8.36074 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.033793 B = 0.003213 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.373611 B = 8713.137512 C = 9048.593559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.072 3.928 10 C -0.222 4.222 11 C -0.101 4.101 12 C 0.026 3.974 13 N -0.653 5.653 14 C 0.691 3.309 15 O -0.617 6.617 16 N -0.710 5.710 17 C 0.104 3.896 18 H 0.119 0.881 19 C -0.139 4.139 20 C 0.047 3.953 21 O -0.361 6.361 22 C 0.460 3.540 23 O -0.501 6.501 24 C -0.099 4.099 25 C -0.178 4.178 26 H 0.286 0.714 27 H 0.111 0.889 28 H 0.133 0.867 29 H 0.416 0.584 30 H 0.421 0.579 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 -18.774 -11.445 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.525 4.525 8 H 0.101 0.899 9 C 0.069 3.931 10 C -0.242 4.242 11 C -0.122 4.122 12 C -0.068 4.068 13 N -0.302 5.302 14 C 0.392 3.608 15 O -0.496 6.496 16 N -0.370 5.370 17 C -0.004 4.004 18 H 0.137 0.863 19 C -0.176 4.176 20 C -0.026 4.026 21 O -0.277 6.277 22 C 0.300 3.700 23 O -0.386 6.386 24 C -0.119 4.119 25 C -0.199 4.199 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.151 0.849 29 H 0.254 0.746 30 H 0.260 0.740 31 H 0.141 0.859 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.962 -17.657 -10.581 22.070 hybrid contribution 0.506 0.486 0.249 0.744 sum -7.456 -17.170 -10.332 21.381 Atomic orbital electron populations 1.69953 1.09321 1.30510 1.36006 1.26889 0.95422 1.04960 0.91287 0.85187 0.78599 0.75249 0.80239 1.18116 1.19650 1.18084 1.19798 0.98173 0.92242 1.42325 0.89929 1.18001 0.91832 0.93608 0.89612 1.20822 1.04429 0.92429 1.06565 1.20377 0.96237 0.98407 0.97146 1.17019 0.98534 0.85071 1.06189 1.41770 1.04702 1.11537 1.72157 1.16232 0.82267 0.83917 0.78378 1.90956 1.65561 1.35473 1.57597 1.44499 1.06097 1.14322 1.72079 1.22216 0.80781 1.04457 0.92989 0.86293 1.23383 0.98011 0.96361 0.99892 1.24549 0.99012 1.05181 0.73823 1.86757 1.52373 1.55462 1.33094 1.24223 0.78401 0.75826 0.91577 1.90758 1.64303 1.52009 1.31533 1.20454 0.98598 0.92578 1.00276 1.20877 1.00195 0.96443 1.02349 0.90350 0.87114 0.84912 0.74648 0.73954 0.85885 0.84119 0.83974 0.86742 0.88981 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.20 10.95 21.82 0.24 -46.96 16 2 C 0.03 1.51 5.15 85.24 0.44 1.95 16 3 Si 0.99 39.91 29.59 68.60 2.03 41.94 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.71 9.04 23.39 0.21 -27.49 16 8 H 0.08 4.33 7.90 -2.92 -0.02 4.31 16 9 C 0.07 4.09 5.57 -21.28 -0.12 3.97 16 10 C -0.22 -11.06 9.74 22.48 0.22 -10.85 16 11 C -0.10 -4.44 9.90 22.13 0.22 -4.22 16 12 C 0.03 1.18 6.27 38.56 0.24 1.42 16 13 N -0.65 -22.66 5.31 -316.79 -1.68 -24.35 16 14 C 0.69 25.24 8.25 179.06 1.48 26.72 16 15 O -0.62 -30.17 13.80 -3.97 -0.05 -30.22 16 16 N -0.71 -16.15 5.16 -457.70 -2.36 -18.51 16 17 C 0.10 2.09 3.24 45.02 0.15 2.23 16 18 H 0.12 2.81 7.68 -2.38 -0.02 2.79 16 19 C -0.14 -0.68 6.88 31.67 0.22 -0.47 16 20 C 0.05 0.27 7.96 72.49 0.58 0.85 16 21 O -0.36 -7.42 10.93 -47.96 -0.52 -7.94 16 22 C 0.46 13.07 8.28 71.44 0.59 13.66 16 23 O -0.50 -20.91 17.97 21.68 0.39 -20.52 16 24 C -0.10 -5.23 8.57 22.13 0.19 -5.04 16 25 C -0.18 -10.31 8.63 22.48 0.19 -10.11 16 26 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 27 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 28 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 29 H 0.42 10.03 8.83 -92.71 -0.82 9.22 16 30 H 0.42 5.48 8.40 -92.71 -0.78 4.70 16 31 H 0.12 0.03 7.80 -2.39 -0.02 0.01 16 32 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 35 H 0.09 4.94 6.48 -2.91 -0.02 4.93 16 36 H 0.10 5.89 6.18 -2.91 -0.02 5.87 16 Total: -1.00 -88.89 314.60 2.19 -86.70 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.45 Total: 27.23 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 4.60 Total: -7.38 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -3.81 Total: -89.82 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -0.19 Total: -58.68 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -88.89 2.19 -86.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878085726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.087 kcal (2) G-P(sol) polarization free energy of solvation -88.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.23 seconds