Wall clock time and date at job start Tue Mar 31 2020 08:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48501 * 109.47086 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46606 * 120.00313 * 3 2 1 6 6 H 1.48493 * 109.47177 * 240.00283 * 3 2 1 7 7 C 1.39896 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00110 * 150.42258 * 7 2 1 9 9 C 1.41161 * 119.99548 * 330.41986 * 7 2 1 10 10 C 1.40870 * 120.16279 * 333.06662 * 9 7 2 11 11 C 1.36376 * 119.82579 * 179.76437 * 10 9 7 12 12 C 1.39488 * 120.16646 * 0.49482 * 11 10 9 13 13 N 1.39238 * 119.83093 * 179.75734 * 12 11 10 14 14 C 1.34784 * 120.00193 * 33.58112 * 13 12 11 15 15 O 1.21585 * 119.99570 * 4.76211 * 14 13 12 16 16 N 1.34770 * 120.00063 * 184.75727 * 14 13 12 17 17 C 1.46504 * 119.99894 * 180.02562 * 16 14 13 18 18 H 1.09004 * 110.62466 * 31.90901 * 17 16 14 19 19 C 1.54369 * 110.70028 * 268.62895 * 17 16 14 20 20 O 1.45953 * 105.06525 * 223.79023 * 19 17 16 21 21 C 1.34558 * 108.40162 * 32.44378 * 20 19 17 22 22 O 1.20827 * 125.94541 * 146.64463 * 21 20 19 23 23 C 1.51512 * 108.11338 * 326.65807 * 21 20 19 24 24 C 1.39475 * 120.33366 * 359.78089 * 12 11 10 25 25 C 1.36376 * 120.17148 * 359.95752 * 24 12 11 26 26 H 0.96999 * 119.99935 * 173.60494 * 1 2 3 27 27 H 1.08001 * 120.08584 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.91716 * 180.25835 * 11 10 9 29 29 H 0.97000 * 120.00149 * 213.57580 * 13 12 11 30 30 H 0.96998 * 120.00396 * 0.02562 * 16 14 13 31 31 H 1.08999 * 110.31934 * 342.68527 * 19 17 16 32 32 H 1.08996 * 110.32493 * 104.89391 * 19 17 16 33 33 H 1.08994 * 110.40604 * 261.59871 * 23 21 20 34 34 H 1.09001 * 110.50516 * 139.21781 * 23 21 20 35 35 H 1.08006 * 119.91516 * 179.97438 * 24 12 11 36 36 H 1.07994 * 120.08883 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 1.2778 2.7465 0.0006 5 1 3.0966 1.6963 1.2125 6 1 3.0965 1.6965 -1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 2.9827 -1.2722 -0.4622 9 6 1.4404 -2.3546 0.6024 10 6 0.5124 -2.2135 1.6529 11 6 -0.0356 -3.3224 2.2272 12 6 0.3284 -4.5939 1.7841 13 7 -0.2317 -5.7214 2.3789 14 6 -1.5009 -5.6847 2.8310 15 8 -2.1850 -4.6974 2.6425 16 7 -2.0116 -6.7423 3.4920 17 6 -3.3914 -6.7026 3.9830 18 1 -4.0169 -6.1024 3.3222 19 6 -3.4410 -6.1614 5.4278 20 8 -4.3691 -7.0415 6.1309 21 6 -4.2676 -8.2749 5.6027 22 8 -4.3977 -9.3160 6.2020 23 6 -3.9614 -8.1311 4.1259 24 6 1.2509 -4.7416 0.7484 25 6 1.8034 -3.6420 0.1607 26 1 -0.4850 -0.8348 -0.0936 27 1 0.2325 -1.2297 1.9996 28 1 -0.7503 -3.2159 3.0298 29 1 0.2915 -6.5333 2.4678 30 1 -1.4657 -7.5298 3.6427 31 1 -2.4527 -6.2108 5.8848 32 1 -3.8118 -5.1364 5.4357 33 1 -4.8723 -8.2375 3.5368 34 1 -3.2209 -8.8685 3.8159 35 1 1.5282 -5.7294 0.4109 36 1 2.5179 -3.7579 -0.6408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878086315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:27 Heat of formation + Delta-G solvation = -86.458171 kcal Electronic energy + Delta-G solvation = -21982.792309 eV Core-core repulsion = 18431.939714 eV Total energy + Delta-G solvation = -3550.852595 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39673 -39.97530 -37.99836 -37.53135 -35.31466 -34.58166 -33.12384 -31.18153 -29.68125 -28.73097 -28.09309 -24.89001 -22.82558 -21.72091 -21.58136 -21.16747 -20.32629 -18.38938 -17.96462 -17.56836 -17.04812 -16.79098 -16.52805 -15.47751 -15.09009 -14.53448 -14.40193 -14.11045 -14.03467 -13.60679 -13.45188 -13.23663 -12.65472 -12.50025 -12.40456 -12.16660 -12.00833 -11.44183 -11.14564 -11.07400 -11.03386 -10.62752 -10.41876 -10.13581 -10.05428 -9.55698 -9.32277 -9.23107 -8.79464 -7.78502 -7.31867 -7.10779 -4.39173 1.52767 2.50107 2.67992 2.87209 3.01071 3.13351 3.18249 3.35285 3.44992 3.62785 3.92399 4.00885 4.22297 4.39655 4.52810 4.58433 4.82949 5.10783 5.29202 5.39356 5.46988 5.97124 6.11229 6.20103 6.35897 6.56644 6.60120 6.86480 7.00199 7.03685 7.08023 7.36461 7.59486 7.72327 7.75851 7.80927 8.16839 8.25419 8.26627 8.68708 8.81374 8.90820 10.00895 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.036474 B = 0.002962 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.494326 B = 9450.987306 C = 9968.069473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.041 3.959 3 Si 1.062 2.938 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.076 0.924 9 C 0.094 3.906 10 C -0.209 4.209 11 C -0.064 4.064 12 C -0.006 4.006 13 N -0.661 5.661 14 C 0.694 3.306 15 O -0.572 6.572 16 N -0.745 5.745 17 C 0.137 3.863 18 H 0.124 0.876 19 C 0.041 3.959 20 O -0.350 6.350 21 C 0.487 3.513 22 O -0.450 6.450 23 C -0.195 4.195 24 C -0.092 4.092 25 C -0.219 4.219 26 H 0.300 0.700 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.392 0.608 30 H 0.396 0.604 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 -11.832 6.085 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.183 4.183 3 Si 0.886 3.114 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.094 0.906 9 C 0.091 3.909 10 C -0.229 4.229 11 C -0.085 4.085 12 C -0.099 4.099 13 N -0.306 5.306 14 C 0.394 3.606 15 O -0.448 6.448 16 N -0.403 5.403 17 C 0.030 3.970 18 H 0.142 0.858 19 C -0.035 4.035 20 O -0.267 6.267 21 C 0.327 3.673 22 O -0.332 6.332 23 C -0.234 4.234 24 C -0.113 4.113 25 C -0.239 4.239 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.225 0.775 30 H 0.231 0.769 31 H 0.108 0.892 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.846 -9.684 6.442 12.600 hybrid contribution 0.741 -2.577 -0.135 2.684 sum -4.106 -12.261 6.306 14.386 Atomic orbital electron populations 1.70460 1.08311 1.34388 1.27586 1.27021 0.95564 1.04350 0.91320 0.83687 0.75775 0.73964 0.78022 1.19862 1.19943 1.20129 1.20493 1.05428 0.94996 1.34199 0.90554 1.17697 0.90477 0.92483 0.90290 1.20768 1.04887 0.97007 1.00208 1.20342 0.98074 0.91174 0.98873 1.16834 1.05879 0.84855 1.02312 1.42037 1.11319 1.15214 1.62059 1.15999 0.82210 0.83182 0.79167 1.90960 1.59358 1.32172 1.62306 1.45122 1.13651 1.19269 1.62283 1.21806 0.84222 0.95538 0.95452 0.85767 1.24751 0.93097 0.94830 0.90775 1.87329 1.58025 1.20741 1.60646 1.23155 0.72081 0.83023 0.89054 1.90723 1.44143 1.28413 1.69890 1.23218 1.05728 0.98619 0.95849 1.20064 0.98847 0.97336 0.95011 1.20510 1.07421 0.92262 1.03662 0.88694 0.87776 0.87752 0.77507 0.76921 0.89213 0.85984 0.85422 0.86570 0.89111 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.86 12.42 55.55 0.69 -20.18 16 2 C 0.04 1.02 4.80 -17.34 -0.08 0.94 16 3 Si 1.06 21.22 30.02 -169.99 -5.10 16.12 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.52 -13.63 8.92 -37.85 -0.34 -13.97 16 8 H 0.08 1.92 7.99 -52.49 -0.42 1.51 16 9 C 0.09 2.43 5.23 -106.80 -0.56 1.87 16 10 C -0.21 -5.34 8.09 -39.26 -0.32 -5.66 16 11 C -0.06 -1.51 8.57 -39.79 -0.34 -1.85 16 12 C -0.01 -0.13 6.29 -83.57 -0.53 -0.66 16 13 N -0.66 -10.37 5.32 -14.10 -0.07 -10.44 16 14 C 0.69 10.65 8.30 -86.92 -0.72 9.93 16 15 O -0.57 -11.39 13.63 5.29 0.07 -11.32 16 16 N -0.74 -7.23 5.07 -57.21 -0.29 -7.52 16 17 C 0.14 1.18 3.56 -66.44 -0.24 0.94 16 18 H 0.12 1.21 7.55 -51.93 -0.39 0.82 16 19 C 0.04 0.36 7.60 37.87 0.29 0.65 16 20 O -0.35 -3.68 11.17 -39.72 -0.44 -4.12 16 21 C 0.49 4.92 8.50 36.40 0.31 5.23 16 22 O -0.45 -6.02 18.00 -18.32 -0.33 -6.35 16 23 C -0.20 -1.30 6.72 -26.71 -0.18 -1.48 16 24 C -0.09 -1.92 9.89 -39.79 -0.39 -2.31 16 25 C -0.22 -5.13 9.74 -39.26 -0.38 -5.51 16 26 H 0.30 8.28 7.15 -40.82 -0.29 7.99 16 27 H 0.10 2.77 6.77 -52.49 -0.36 2.41 16 28 H 0.10 2.44 6.39 -52.49 -0.34 2.10 16 29 H 0.39 4.57 8.83 -40.82 -0.36 4.21 16 30 H 0.40 2.62 8.42 -40.82 -0.34 2.28 16 31 H 0.09 0.76 8.02 -51.93 -0.42 0.34 16 32 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.12 0.60 7.71 -51.93 -0.40 0.20 16 35 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -32.11 314.37 -8.02 -40.14 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -3.80 Total: 10.83 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.48 Total: -11.88 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.32 Total: -38.14 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.70 Total: -21.80 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.10 Total: 16.12 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.11 -8.02 -40.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878086315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.323 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds