Wall clock time and date at job start Tue Mar 31 2020 08:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48501 * 109.47086 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46606 * 120.00313 * 3 2 1 6 6 H 1.48493 * 109.47177 * 240.00283 * 3 2 1 7 7 C 1.39896 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00110 * 150.42258 * 7 2 1 9 9 C 1.41161 * 119.99548 * 330.41986 * 7 2 1 10 10 C 1.40870 * 120.16279 * 333.06662 * 9 7 2 11 11 C 1.36376 * 119.82579 * 179.76437 * 10 9 7 12 12 C 1.39488 * 120.16646 * 0.49482 * 11 10 9 13 13 N 1.39238 * 119.83093 * 179.75734 * 12 11 10 14 14 C 1.34784 * 120.00193 * 33.58112 * 13 12 11 15 15 O 1.21585 * 119.99570 * 4.76211 * 14 13 12 16 16 N 1.34770 * 120.00063 * 184.75727 * 14 13 12 17 17 C 1.46504 * 119.99894 * 180.02562 * 16 14 13 18 18 H 1.09004 * 110.62466 * 31.90901 * 17 16 14 19 19 C 1.54369 * 110.70028 * 268.62895 * 17 16 14 20 20 O 1.45953 * 105.06525 * 223.79023 * 19 17 16 21 21 C 1.34558 * 108.40162 * 32.44378 * 20 19 17 22 22 O 1.20827 * 125.94541 * 146.64463 * 21 20 19 23 23 C 1.51512 * 108.11338 * 326.65807 * 21 20 19 24 24 C 1.39475 * 120.33366 * 359.78089 * 12 11 10 25 25 C 1.36376 * 120.17148 * 359.95752 * 24 12 11 26 26 H 0.96999 * 119.99935 * 173.60494 * 1 2 3 27 27 H 1.08001 * 120.08584 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.91716 * 180.25835 * 11 10 9 29 29 H 0.97000 * 120.00149 * 213.57580 * 13 12 11 30 30 H 0.96998 * 120.00396 * 0.02562 * 16 14 13 31 31 H 1.08999 * 110.31934 * 342.68527 * 19 17 16 32 32 H 1.08996 * 110.32493 * 104.89391 * 19 17 16 33 33 H 1.08994 * 110.40604 * 261.59871 * 23 21 20 34 34 H 1.09001 * 110.50516 * 139.21781 * 23 21 20 35 35 H 1.08006 * 119.91516 * 179.97438 * 24 12 11 36 36 H 1.07994 * 120.08883 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 1.2778 2.7465 0.0006 5 1 3.0966 1.6963 1.2125 6 1 3.0965 1.6965 -1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 2.9827 -1.2722 -0.4622 9 6 1.4404 -2.3546 0.6024 10 6 0.5124 -2.2135 1.6529 11 6 -0.0356 -3.3224 2.2272 12 6 0.3284 -4.5939 1.7841 13 7 -0.2317 -5.7214 2.3789 14 6 -1.5009 -5.6847 2.8310 15 8 -2.1850 -4.6974 2.6425 16 7 -2.0116 -6.7423 3.4920 17 6 -3.3914 -6.7026 3.9830 18 1 -4.0169 -6.1024 3.3222 19 6 -3.4410 -6.1614 5.4278 20 8 -4.3691 -7.0415 6.1309 21 6 -4.2676 -8.2749 5.6027 22 8 -4.3977 -9.3160 6.2020 23 6 -3.9614 -8.1311 4.1259 24 6 1.2509 -4.7416 0.7484 25 6 1.8034 -3.6420 0.1607 26 1 -0.4850 -0.8348 -0.0936 27 1 0.2325 -1.2297 1.9996 28 1 -0.7503 -3.2159 3.0298 29 1 0.2915 -6.5333 2.4678 30 1 -1.4657 -7.5298 3.6427 31 1 -2.4527 -6.2108 5.8848 32 1 -3.8118 -5.1364 5.4357 33 1 -4.8723 -8.2375 3.5368 34 1 -3.2209 -8.8685 3.8159 35 1 1.5282 -5.7294 0.4109 36 1 2.5179 -3.7579 -0.6408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878086315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:25 Heat of formation + Delta-G solvation = -108.231829 kcal Electronic energy + Delta-G solvation = -21983.736486 eV Core-core repulsion = 18431.939714 eV Total energy + Delta-G solvation = -3551.796772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.24431 -41.27119 -39.44933 -38.66349 -36.59587 -35.96548 -34.77080 -32.18216 -31.49918 -30.32299 -28.93262 -26.62666 -24.03122 -23.21170 -22.57947 -22.45910 -21.72263 -19.82388 -19.62370 -18.62595 -17.93629 -17.80416 -17.47572 -16.58668 -16.53758 -16.22568 -15.79564 -15.53688 -15.17469 -14.79075 -14.51158 -14.30407 -14.26770 -14.11136 -13.77104 -13.29615 -13.14380 -12.90085 -12.83472 -12.68067 -11.97063 -11.90626 -11.82401 -11.64972 -11.44002 -11.20095 -10.96123 -10.59028 -10.30247 -9.63387 -9.22371 -8.88375 -6.33013 0.75035 0.81298 1.00004 1.51389 1.54546 1.64075 1.81208 2.10795 2.26150 2.35523 2.70792 2.89679 3.21812 3.28414 3.55575 3.59109 3.90217 4.24874 4.31648 4.37748 4.52493 4.63665 4.68985 4.80832 5.00924 5.08814 5.25284 5.32050 5.46162 5.58379 5.59220 5.77628 5.86784 5.98767 6.10246 6.24552 6.29207 6.42237 6.81598 6.97535 7.08275 7.59845 8.03865 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.036474 B = 0.002962 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.494326 B = 9450.987306 C = 9968.069473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.005 3.995 3 Si 1.114 2.886 4 H -0.275 1.275 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.064 3.936 10 C -0.226 4.226 11 C -0.079 4.079 12 C 0.022 3.978 13 N -0.654 5.654 14 C 0.696 3.304 15 O -0.618 6.618 16 N -0.718 5.718 17 C 0.137 3.863 18 H 0.116 0.884 19 C 0.042 3.958 20 O -0.366 6.366 21 C 0.488 3.512 22 O -0.488 6.488 23 C -0.174 4.174 24 C -0.088 4.088 25 C -0.227 4.227 26 H 0.280 0.720 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.417 0.583 30 H 0.417 0.583 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 -14.185 6.055 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.212 4.212 3 Si 0.931 3.069 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.061 3.939 10 C -0.246 4.246 11 C -0.099 4.099 12 C -0.072 4.072 13 N -0.302 5.302 14 C 0.396 3.604 15 O -0.498 6.498 16 N -0.376 5.376 17 C 0.030 3.970 18 H 0.134 0.866 19 C -0.033 4.033 20 O -0.284 6.284 21 C 0.330 3.670 22 O -0.373 6.373 23 C -0.212 4.212 24 C -0.108 4.108 25 C -0.246 4.246 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.254 0.746 30 H 0.256 0.744 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.226 -12.132 6.436 14.369 hybrid contribution 0.455 -2.107 0.001 2.156 sum -3.771 -14.239 6.437 16.075 Atomic orbital electron populations 1.70592 1.09190 1.32934 1.30953 1.28422 0.95500 1.07638 0.89625 0.83064 0.74836 0.69826 0.79204 1.19930 1.18890 1.17850 1.20666 1.05864 0.96185 1.36225 0.90645 1.18002 0.91229 0.93874 0.90801 1.20664 1.06084 0.96707 1.01184 1.20423 0.98294 0.92107 0.99120 1.16890 1.04024 0.85445 1.00876 1.41799 1.11914 1.14694 1.61782 1.16124 0.81715 0.83582 0.78944 1.90956 1.60487 1.34434 1.63906 1.44816 1.14216 1.18352 1.60264 1.21845 0.83233 0.96927 0.94963 0.86602 1.24768 0.93122 0.94586 0.90813 1.87317 1.58319 1.21283 1.61449 1.23634 0.70824 0.82242 0.90264 1.90710 1.46022 1.29569 1.70965 1.23163 1.07310 0.97463 0.93261 1.20431 0.97704 0.98675 0.94026 1.20781 1.07619 0.92180 1.04069 0.90883 0.90316 0.88118 0.74552 0.74446 0.88582 0.86091 0.83073 0.84040 0.84510 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.45 12.42 21.82 0.27 -45.18 16 2 C 0.00 0.25 4.80 85.24 0.41 0.66 16 3 Si 1.11 43.54 30.02 68.60 2.06 45.60 16 4 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 6 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 7 C -0.56 -30.24 8.92 23.39 0.21 -30.03 16 8 H 0.08 3.91 7.99 -2.91 -0.02 3.89 16 9 C 0.06 3.39 5.23 -21.27 -0.11 3.28 16 10 C -0.23 -12.04 8.09 22.48 0.18 -11.86 16 11 C -0.08 -3.74 8.57 22.14 0.19 -3.55 16 12 C 0.02 0.86 6.29 38.57 0.24 1.10 16 13 N -0.65 -18.23 5.32 -316.78 -1.68 -19.92 16 14 C 0.70 19.46 8.30 179.05 1.49 20.94 16 15 O -0.62 -23.97 13.63 -3.99 -0.05 -24.02 16 16 N -0.72 -11.28 5.07 -453.20 -2.30 -13.58 16 17 C 0.14 1.96 3.56 45.96 0.16 2.12 16 18 H 0.12 2.00 7.55 -2.38 -0.02 1.99 16 19 C 0.04 0.67 7.60 72.45 0.55 1.22 16 20 O -0.37 -7.16 11.17 -55.04 -0.61 -7.77 16 21 C 0.49 8.83 8.50 71.49 0.61 9.44 16 22 O -0.49 -12.40 18.00 21.55 0.39 -12.02 16 23 C -0.17 -1.66 6.72 30.61 0.21 -1.45 16 24 C -0.09 -3.42 9.89 22.13 0.22 -3.20 16 25 C -0.23 -10.46 9.74 22.48 0.22 -10.24 16 26 H 0.28 16.45 7.15 -92.71 -0.66 15.79 16 27 H 0.08 4.48 6.77 -2.91 -0.02 4.46 16 28 H 0.10 4.79 6.39 -2.91 -0.02 4.77 16 29 H 0.42 7.66 8.83 -92.71 -0.82 6.84 16 30 H 0.42 3.46 8.42 -92.71 -0.78 2.68 16 31 H 0.10 1.41 8.02 -2.39 -0.02 1.39 16 32 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.14 0.73 7.71 -2.39 -0.02 0.72 16 35 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -74.08 314.37 2.30 -71.79 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.34 Total: 26.68 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.57 Total: -21.58 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -3.71 Total: -78.68 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.28 Total: -43.81 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.06 Total: 45.60 kcal Total: -74.08 2.30 -71.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878086315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.445 kcal (2) G-P(sol) polarization free energy of solvation -74.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds