Wall clock time and date at job start Tue Mar 31 2020 08:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 120.00001 * 2 1 4 4 H 1.48496 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46805 * 299.99782 * 3 2 1 6 6 H 1.48497 * 109.46886 * 59.99868 * 3 2 1 7 7 C 1.37875 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00459 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99906 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99956 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46865 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.47419 * 64.99875 * 12 11 10 14 14 C 1.34821 * 116.99748 * 179.97438 * 13 12 11 15 15 O 1.21553 * 120.00199 * 0.02562 * 14 13 12 16 16 C 1.47101 * 119.99338 * 180.02562 * 14 13 12 17 17 C 1.39021 * 120.91508 * 0.02562 * 16 14 13 18 18 C 1.39732 * 119.17797 * 179.97438 * 17 16 14 19 19 C 1.35096 * 121.28412 * 359.97438 * 18 17 16 20 20 N 1.36216 * 121.78373 * 0.02562 * 19 18 17 21 21 N 1.40082 * 132.47773 * 179.97438 * 20 19 18 22 22 C 1.31356 * 108.87441 * 180.02562 * 21 20 19 23 23 C 1.38892 * 108.94373 * 359.76285 * 22 21 20 24 24 C 1.37182 * 120.19804 * 0.02562 * 20 19 18 25 25 H 0.96996 * 119.99851 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46947 * 59.99815 * 9 7 2 27 27 H 1.09003 * 109.46898 * 299.99813 * 9 7 2 28 28 H 1.08999 * 109.46897 * 60.00150 * 11 10 9 29 29 H 1.08998 * 109.46859 * 300.00250 * 11 10 9 30 30 H 1.08999 * 109.47017 * 304.99903 * 12 11 10 31 31 H 1.08999 * 109.47038 * 185.00500 * 12 11 10 32 32 H 1.07991 * 120.40979 * 0.02562 * 17 16 14 33 33 H 1.07997 * 119.35388 * 179.97438 * 18 17 16 34 34 H 1.07997 * 119.10569 * 179.97438 * 19 18 17 35 35 H 1.07999 * 125.52468 * 180.02562 * 22 21 20 36 36 H 1.08000 * 126.21995 * 180.31706 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6481 -5.9561 0.0017 13 8 3.3994 -5.8879 1.2424 14 6 4.3978 -6.7795 1.4031 15 8 4.6342 -7.5913 0.5298 16 6 5.2012 -6.7698 2.6354 17 6 4.9469 -5.8501 3.6464 18 6 5.7322 -5.8737 4.8020 19 6 6.7302 -6.7715 4.9538 20 7 7.0189 -7.6927 3.9928 21 7 7.9819 -8.7069 3.9134 22 6 7.8492 -9.3299 2.7646 23 6 6.8004 -8.7550 2.0584 24 6 6.2908 -7.7288 2.8307 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 0.9447 -4.9827 -0.8886 29 1 0.9453 -4.9821 0.8913 30 1 3.3217 -5.7959 -0.8401 31 1 2.1822 -6.9375 -0.0875 32 1 4.1519 -5.1270 3.5404 33 1 5.5374 -5.1603 5.5891 34 1 7.3155 -6.7580 5.8613 35 1 8.4544 -10.1578 2.4261 36 1 6.4482 -9.0547 1.0824 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884868490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:58 Heat of formation + Delta-G solvation = -22.573104 kcal Electronic energy + Delta-G solvation = -21710.943208 eV Core-core repulsion = 18162.860877 eV Total energy + Delta-G solvation = -3548.082331 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.16216 -40.14228 -37.41134 -37.05271 -36.01446 -33.20801 -32.78663 -30.95241 -30.23174 -28.79057 -26.97553 -25.27469 -22.94673 -22.78332 -22.35732 -21.77004 -20.88796 -18.07868 -17.61406 -16.72519 -16.59983 -16.54936 -16.26823 -15.81657 -15.74359 -15.27129 -14.68955 -14.38323 -14.13959 -13.84323 -13.40584 -13.01194 -12.87627 -12.51075 -12.36617 -12.07285 -11.96352 -11.47572 -11.07504 -10.96134 -10.90664 -10.78009 -10.63750 -10.47209 -10.40627 -10.07930 -9.66704 -9.14926 -8.91920 -8.25270 -7.93387 -6.15372 -4.17105 -0.00345 0.85547 1.84737 2.28029 2.48594 2.67949 3.25767 3.26474 3.33250 3.39663 3.95498 4.14377 4.29415 4.39998 4.48334 4.66661 4.73202 5.01450 5.19563 5.21449 5.26193 5.37308 5.43363 5.47886 5.65900 5.82824 5.84908 5.90327 5.96867 6.05885 6.35034 6.49624 6.55256 7.01660 7.24714 7.35948 7.74796 7.78110 8.08931 8.48380 8.95954 9.47988 10.96195 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.003141 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.472908 B = 8911.364939 C = 9728.340743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.077 3.923 13 O -0.337 6.337 14 C 0.517 3.483 15 O -0.504 6.504 16 C -0.130 4.130 17 C 0.004 3.996 18 C -0.184 4.184 19 C 0.148 3.852 20 N -0.288 5.288 21 N -0.317 5.317 22 C 0.082 3.918 23 C -0.263 4.263 24 C 0.131 3.869 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.196 0.804 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.377 -16.062 9.098 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.004 3.996 13 O -0.253 6.253 14 C 0.361 3.639 15 O -0.394 6.394 16 C -0.134 4.134 17 C -0.018 4.018 18 C -0.206 4.206 19 C 0.023 3.977 20 N -0.055 5.055 21 N -0.140 5.140 22 C -0.096 4.096 23 C -0.291 4.291 24 C 0.013 3.987 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.189 0.811 35 H 0.213 0.787 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.230 -16.183 9.901 22.046 hybrid contribution -0.467 0.802 -0.877 1.277 sum 10.763 -15.381 9.024 20.829 Atomic orbital electron populations 1.69964 1.06107 1.27122 1.50573 1.24948 0.94979 0.99460 0.95104 0.86284 0.80048 0.82546 0.77658 1.19450 1.20822 1.20806 1.21087 0.94139 0.89269 1.50790 0.91445 1.20246 0.88740 0.83495 0.95533 1.87920 1.35324 1.12610 1.95237 1.22335 0.93196 0.85424 1.00683 1.23262 0.93558 0.98949 0.83870 1.86623 1.43155 1.53500 1.41985 1.20330 0.78948 0.78658 0.85934 1.90821 1.67876 1.37901 1.42794 1.19416 0.98377 1.00009 0.95555 1.22149 0.95980 0.93669 0.90038 1.20805 0.97424 1.01630 1.00726 1.21653 0.96694 0.86988 0.92412 1.46236 1.23335 1.23330 1.12620 1.77872 1.10775 1.03043 1.22277 1.23977 0.96448 0.98348 0.90832 1.21522 1.02526 1.00874 1.04195 1.20030 0.93398 0.97093 0.88151 0.92662 0.97597 0.97469 0.91774 0.93132 0.90264 0.90203 0.81803 0.81715 0.81071 0.78747 0.81650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.89 9.43 -34.44 -0.32 -15.21 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.17 5.69 36.01 0.20 5.38 16 10 O -0.39 -9.18 10.30 -38.80 -0.40 -9.58 16 11 C 0.06 1.07 6.33 37.16 0.24 1.31 16 12 C 0.08 1.18 5.86 37.16 0.22 1.40 16 13 O -0.34 -5.41 9.51 -43.61 -0.41 -5.82 16 14 C 0.52 7.94 7.90 34.33 0.27 8.21 16 15 O -0.50 -8.46 14.98 -19.31 -0.29 -8.75 16 16 C -0.13 -1.73 6.06 -102.70 -0.62 -2.35 16 17 C 0.00 0.04 9.72 -38.73 -0.38 -0.33 16 18 C -0.18 -1.41 9.90 -40.14 -0.40 -1.80 16 19 C 0.15 1.26 11.12 -16.72 -0.19 1.07 16 20 N -0.29 -3.45 3.89 -9.41 -0.04 -3.49 16 21 N -0.32 -3.89 12.66 30.51 0.39 -3.51 16 22 C 0.08 0.88 11.95 -17.51 -0.21 0.67 16 23 C -0.26 -3.32 10.17 -39.36 -0.40 -3.72 16 24 C 0.13 1.76 6.85 -82.18 -0.56 1.20 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.16 1.62 7.67 -52.49 -0.40 1.22 16 33 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.17 2.09 7.10 -52.49 -0.37 1.72 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -34.94 325.83 -6.50 -41.44 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.12 Total: -3.32 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.25 Total: -2.69 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 1.09 Total: -32.65 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -1.10 Total: -24.15 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.94 -6.50 -41.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884868490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.870 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds