Wall clock time and date at job start Tue Mar 31 2020 08:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 120.00001 * 2 1 4 4 H 1.48496 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46805 * 299.99782 * 3 2 1 6 6 H 1.48497 * 109.46886 * 59.99868 * 3 2 1 7 7 C 1.37875 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00459 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99906 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99956 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46865 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.47419 * 64.99875 * 12 11 10 14 14 C 1.34821 * 116.99748 * 179.97438 * 13 12 11 15 15 O 1.21553 * 120.00199 * 0.02562 * 14 13 12 16 16 C 1.47101 * 119.99338 * 180.02562 * 14 13 12 17 17 C 1.39021 * 120.91508 * 0.02562 * 16 14 13 18 18 C 1.39732 * 119.17797 * 179.97438 * 17 16 14 19 19 C 1.35096 * 121.28412 * 359.97438 * 18 17 16 20 20 N 1.36216 * 121.78373 * 0.02562 * 19 18 17 21 21 N 1.40082 * 132.47773 * 179.97438 * 20 19 18 22 22 C 1.31356 * 108.87441 * 180.02562 * 21 20 19 23 23 C 1.38892 * 108.94373 * 359.76285 * 22 21 20 24 24 C 1.37182 * 120.19804 * 0.02562 * 20 19 18 25 25 H 0.96996 * 119.99851 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46947 * 59.99815 * 9 7 2 27 27 H 1.09003 * 109.46898 * 299.99813 * 9 7 2 28 28 H 1.08999 * 109.46897 * 60.00150 * 11 10 9 29 29 H 1.08998 * 109.46859 * 300.00250 * 11 10 9 30 30 H 1.08999 * 109.47017 * 304.99903 * 12 11 10 31 31 H 1.08999 * 109.47038 * 185.00500 * 12 11 10 32 32 H 1.07991 * 120.40979 * 0.02562 * 17 16 14 33 33 H 1.07997 * 119.35388 * 179.97438 * 18 17 16 34 34 H 1.07997 * 119.10569 * 179.97438 * 19 18 17 35 35 H 1.07999 * 125.52468 * 180.02562 * 22 21 20 36 36 H 1.08000 * 126.21995 * 180.31706 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6481 -5.9561 0.0017 13 8 3.3994 -5.8879 1.2424 14 6 4.3978 -6.7795 1.4031 15 8 4.6342 -7.5913 0.5298 16 6 5.2012 -6.7698 2.6354 17 6 4.9469 -5.8501 3.6464 18 6 5.7322 -5.8737 4.8020 19 6 6.7302 -6.7715 4.9538 20 7 7.0189 -7.6927 3.9928 21 7 7.9819 -8.7069 3.9134 22 6 7.8492 -9.3299 2.7646 23 6 6.8004 -8.7550 2.0584 24 6 6.2908 -7.7288 2.8307 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 0.9447 -4.9827 -0.8886 29 1 0.9453 -4.9821 0.8913 30 1 3.3217 -5.7959 -0.8401 31 1 2.1822 -6.9375 -0.0875 32 1 4.1519 -5.1270 3.5404 33 1 5.5374 -5.1603 5.5891 34 1 7.3155 -6.7580 5.8613 35 1 8.4544 -10.1578 2.4261 36 1 6.4482 -9.0547 1.0824 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884868490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:52 Heat of formation + Delta-G solvation = -44.741582 kcal Electronic energy + Delta-G solvation = -21711.904505 eV Core-core repulsion = 18162.860877 eV Total energy + Delta-G solvation = -3549.043628 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 5.46 seconds Orbital eigenvalues (eV) -43.01019 -41.32721 -38.74959 -38.15148 -37.40068 -34.93831 -34.07266 -31.79517 -31.65308 -29.75631 -28.95825 -26.22335 -24.56320 -23.92146 -23.69339 -22.87759 -21.91347 -19.10715 -18.74009 -18.44175 -17.92425 -17.67571 -17.39222 -17.08607 -16.62847 -16.47892 -16.31375 -16.19680 -15.30459 -14.99165 -14.53859 -14.29862 -14.10335 -13.79429 -13.40577 -13.24541 -13.13125 -12.91737 -12.84396 -12.71631 -12.44206 -12.01561 -11.95379 -11.75118 -11.61393 -11.54846 -11.25132 -10.89129 -10.48424 -10.25806 -8.79204 -8.31432 -6.43226 -0.85346 0.02358 1.01771 1.25717 1.41863 1.42634 1.57402 1.62659 1.66358 2.34123 2.35515 3.02814 3.06799 3.17946 3.29546 3.55152 3.76167 3.88473 3.93504 4.12201 4.26525 4.42028 4.47950 4.49426 4.58415 4.66913 4.77659 4.87297 4.88988 5.04375 5.19028 5.20794 5.29879 5.52763 5.55936 5.74037 5.96534 6.40995 6.50710 6.61671 6.81240 7.28551 8.80894 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.003141 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.472908 B = 8911.364939 C = 9728.340743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.055 3.945 12 C 0.080 3.920 13 O -0.348 6.348 14 C 0.516 3.484 15 O -0.529 6.529 16 C -0.172 4.172 17 C 0.021 3.979 18 C -0.177 4.177 19 C 0.152 3.848 20 N -0.296 5.296 21 N -0.336 5.336 22 C 0.092 3.908 23 C -0.289 4.289 24 C 0.115 3.885 25 H 0.271 0.729 26 H -0.009 1.009 27 H -0.008 1.008 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.168 0.832 33 H 0.208 0.792 34 H 0.211 0.789 35 H 0.231 0.769 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.482 -15.385 10.805 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.022 4.022 12 C 0.007 3.993 13 O -0.265 6.265 14 C 0.363 3.637 15 O -0.421 6.421 16 C -0.175 4.175 17 C -0.001 4.001 18 C -0.199 4.199 19 C 0.028 3.972 20 N -0.064 5.064 21 N -0.158 5.158 22 C -0.086 4.086 23 C -0.318 4.318 24 C -0.003 4.003 25 H 0.080 0.920 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.185 0.815 33 H 0.225 0.775 34 H 0.228 0.772 35 H 0.248 0.752 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.331 -15.525 11.618 22.979 hybrid contribution -0.827 0.538 -1.329 1.655 sum 11.503 -14.987 10.289 21.513 Atomic orbital electron populations 1.70059 1.07650 1.28597 1.50538 1.25911 0.95939 1.03236 0.93953 0.85167 0.78650 0.77498 0.78294 1.18973 1.19834 1.19490 1.21410 0.94073 0.90908 1.52175 0.92189 1.19876 0.88543 0.84322 0.93966 1.87866 1.35511 1.14170 1.95348 1.22644 0.94303 0.83200 1.02054 1.23239 0.93029 0.99409 0.83623 1.86604 1.43669 1.54084 1.42116 1.20727 0.78567 0.77935 0.86511 1.90792 1.68571 1.38849 1.43849 1.19349 0.99776 1.02435 0.95938 1.22428 0.95606 0.92046 0.90055 1.21275 0.96185 1.01959 1.00432 1.22513 0.96607 0.85451 0.92670 1.46535 1.23110 1.23895 1.12832 1.77809 1.11360 1.03617 1.22987 1.24511 0.95727 0.98491 0.89845 1.21612 1.03904 1.01893 1.04396 1.20190 0.93708 0.97324 0.89075 0.92018 0.99135 0.98976 0.89928 0.92163 0.91023 0.87229 0.81462 0.77472 0.77220 0.75243 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.98 43.54 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -32.11 9.43 25.60 0.24 -31.87 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.21 11.35 5.69 71.24 0.41 11.75 16 10 O -0.41 -19.53 10.30 -145.57 -1.50 -21.03 16 11 C 0.05 1.91 6.33 71.98 0.46 2.37 16 12 C 0.08 2.46 5.86 71.98 0.42 2.88 16 13 O -0.35 -11.35 9.51 -54.67 -0.52 -11.87 16 14 C 0.52 16.35 7.90 70.15 0.55 16.90 16 15 O -0.53 -18.50 14.98 19.66 0.29 -18.21 16 16 C -0.17 -4.60 6.06 -18.62 -0.11 -4.71 16 17 C 0.02 0.42 9.72 22.82 0.22 0.64 16 18 C -0.18 -2.16 9.90 21.91 0.22 -1.95 16 19 C 0.15 2.14 11.12 83.29 0.93 3.06 16 20 N -0.30 -6.70 3.89 -183.68 -0.71 -7.42 16 21 N -0.34 -7.79 12.66 -57.39 -0.73 -8.52 16 22 C 0.09 1.91 11.95 84.92 1.01 2.92 16 23 C -0.29 -7.51 10.17 22.41 0.23 -7.28 16 24 C 0.12 3.11 6.85 40.44 0.28 3.39 16 25 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 26 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.17 3.13 7.67 -2.92 -0.02 3.11 16 33 H 0.21 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.23 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.16 4.20 7.10 -2.91 -0.02 4.18 16 Total: -1.00 -77.07 325.83 5.56 -71.51 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.10 Total: 5.29 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.31 Total: -0.96 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.16 Total: -70.29 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -1.72 Total: -51.11 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -77.07 5.56 -71.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884868490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.772 kcal (2) G-P(sol) polarization free energy of solvation -77.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.46 seconds