Wall clock time and date at job start Tue Mar 31 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39811 * 120.06914 * 154.15751 * 3 2 1 5 5 C 1.37659 * 119.94136 * 179.70150 * 4 3 2 6 6 C 1.39150 * 120.09119 * 0.54459 * 5 4 3 7 7 N 1.39255 * 119.93070 * 179.72134 * 6 5 4 8 8 C 1.46854 * 110.99749 * 63.68414 * 7 6 5 9 9 C 1.53029 * 109.52283 * 174.15962 * 8 7 6 10 10 C 1.53126 * 109.27795 * 59.18140 * 9 8 7 11 11 C 1.53124 * 109.15878 * 302.34185 * 10 9 8 12 12 H 1.09004 * 109.50324 * 297.71684 * 11 10 9 13 13 C 1.50692 * 109.50139 * 177.59632 * 11 10 9 14 14 H 1.07998 * 120.00386 * 240.00243 * 13 11 10 15 15 C 1.37883 * 120.00294 * 60.00402 * 13 11 10 16 16 N 1.31515 * 119.99399 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00099 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47661 * 89.99899 * 17 15 13 19 19 H 1.48504 * 109.46791 * 210.00010 * 17 15 13 20 20 H 1.48501 * 109.47301 * 329.99325 * 17 15 13 21 21 C 1.46843 * 111.00082 * 299.47699 * 7 6 5 22 22 C 1.39251 * 120.14402 * 359.45426 * 6 5 4 23 23 Cl 1.73598 * 119.97633 * 180.29515 * 22 6 5 24 24 C 1.37759 * 120.05360 * 0.26636 * 22 6 5 25 25 H 1.07999 * 120.02991 * 359.96901 * 4 3 2 26 26 H 1.08000 * 119.95530 * 180.27082 * 5 4 3 27 27 H 1.08999 * 109.45788 * 54.14396 * 8 7 6 28 28 H 1.09003 * 109.45264 * 294.17278 * 8 7 6 29 29 H 1.08994 * 109.50822 * 299.23828 * 9 8 7 30 30 H 1.08998 * 109.53380 * 179.13826 * 9 8 7 31 31 H 1.08998 * 109.52297 * 62.25132 * 10 9 8 32 32 H 1.08999 * 109.51925 * 182.44336 * 10 9 8 33 33 H 0.96998 * 119.99547 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.45906 * 305.84755 * 21 7 6 35 35 H 1.08997 * 109.46476 * 65.82300 * 21 7 6 36 36 H 1.08000 * 120.04498 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 1.0899 -0.5274 5 6 4.6446 1.0905 -0.5205 6 6 5.3401 0.0036 0.0003 7 7 6.7327 0.0052 0.0004 8 6 7.2576 1.0847 0.8463 9 6 8.7806 0.9670 0.9392 10 6 9.3812 1.0568 -0.4665 11 6 8.7819 -0.0484 -1.3406 12 1 9.0463 -1.0222 -0.9282 13 6 9.3235 0.0693 -2.7419 14 1 8.6489 0.2295 -3.5699 15 6 10.6803 -0.0277 -2.9671 16 7 11.5019 -0.2224 -1.9587 17 14 11.3517 0.1189 -4.7041 18 1 11.6560 1.5422 -4.9988 19 1 12.5925 -0.6879 -4.8248 20 1 10.3403 -0.3812 -5.6695 21 6 7.2589 0.0988 -1.3674 22 6 4.6467 -1.0832 0.5266 23 17 5.5187 -2.4335 1.1822 24 6 3.2691 -1.0876 0.5279 25 1 2.7293 1.9321 -0.9360 26 1 5.1856 1.9337 -0.9239 27 1 6.8258 1.0068 1.8441 28 1 6.9937 2.0484 0.4105 29 1 9.0449 0.0093 1.3874 30 1 9.1719 1.7771 1.5545 31 1 9.1501 2.0298 -0.8999 32 1 10.4623 0.9299 -0.4093 33 1 12.4564 -0.2902 -2.1171 34 1 6.8280 -0.6952 -1.9773 35 1 6.9950 1.0671 -1.7925 36 1 2.7314 -1.9304 0.9365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894487387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:45 Heat of formation + Delta-G solvation = 47.397298 kcal Electronic energy + Delta-G solvation = -20232.042973 eV Core-core repulsion = 17127.703952 eV Total energy + Delta-G solvation = -3104.339022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.25436 -38.05121 -36.64910 -36.08476 -33.97512 -32.10638 -31.10150 -30.03282 -29.33685 -25.03176 -24.57096 -22.94948 -21.98471 -21.45207 -19.28049 -18.65411 -17.13262 -16.09690 -15.84219 -15.13468 -14.79309 -14.47254 -14.16756 -14.08081 -14.05840 -13.46340 -13.17599 -13.00178 -12.79416 -12.56529 -12.41633 -12.15326 -11.80738 -11.67413 -11.33754 -10.98940 -10.83209 -10.75674 -10.68626 -10.20681 -9.95712 -9.59723 -9.24131 -9.09938 -8.85606 -8.61346 -8.37221 -8.05618 -6.02508 -4.09043 0.47326 0.98877 2.14901 2.52511 2.66579 3.27928 3.35512 3.38020 3.56834 3.65195 4.02871 4.42187 4.60354 4.75538 5.02978 5.19433 5.28229 5.45620 5.55816 5.58784 5.69187 5.89880 5.93056 6.01277 6.10939 6.27288 6.33954 6.39710 6.60238 6.63651 6.84909 7.07815 7.24515 7.30226 7.40505 7.68107 7.71740 8.00650 8.10244 8.39691 8.94551 9.55761 11.03393 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.004206 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.702364 B = 6655.136070 C = 7017.917515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.263 3.737 3 C -0.037 4.037 4 C -0.056 4.056 5 C -0.143 4.143 6 C 0.151 3.849 7 N -0.507 5.507 8 C 0.070 3.930 9 C -0.117 4.117 10 C -0.112 4.112 11 C 0.057 3.943 12 H 0.038 0.962 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.073 3.927 22 C -0.023 4.023 23 Cl -0.039 7.039 24 C -0.060 4.060 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.062 0.938 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.028 0.972 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 1.596 6.405 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.053 4.053 3 C -0.041 4.041 4 C -0.077 4.077 5 C -0.163 4.163 6 C 0.055 3.945 7 N -0.229 5.229 8 C -0.056 4.056 9 C -0.155 4.155 10 C -0.150 4.150 11 C 0.038 3.962 12 H 0.056 0.944 13 C -0.555 4.555 14 H 0.072 0.928 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.052 4.052 22 C -0.052 4.052 23 Cl -0.009 7.009 24 C -0.082 4.082 25 H 0.153 0.847 26 H 0.159 0.841 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.059 1.003 6.698 14.711 hybrid contribution 0.673 0.738 -1.269 1.615 sum -12.387 1.741 5.429 13.636 Atomic orbital electron populations 1.81255 1.11974 1.07647 1.08890 1.25568 0.92448 0.93700 0.93539 1.15799 0.84291 0.97239 1.06751 1.21095 0.93963 0.96581 0.96108 1.21751 0.94033 0.99539 1.01009 1.19087 0.91385 0.91218 0.92833 1.59662 1.01084 1.47467 1.14656 1.22113 0.97338 0.90555 0.95583 1.21686 0.92456 1.01109 1.00245 1.21687 1.03589 0.98345 0.91396 1.18668 0.86425 0.95892 0.95210 0.94435 1.21096 0.92055 1.49860 0.92511 0.92790 1.24914 0.97063 0.94993 0.96725 1.69881 1.03178 1.49420 1.30039 0.86630 0.78545 0.77960 0.85064 1.20779 1.21241 1.19943 1.22467 0.99762 0.98999 0.83922 1.20756 0.91192 0.91319 1.01895 1.98394 1.76533 1.42290 1.83709 1.20935 0.91935 0.97603 0.97707 0.84665 0.84119 0.91948 0.94981 0.91736 0.93086 0.95014 0.88881 0.92991 0.91808 0.95372 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.52 18.54 41.84 0.78 -4.75 16 2 C 0.26 2.90 15.33 -22.47 -0.34 2.56 16 3 C -0.04 -0.37 5.74 -106.80 -0.61 -0.98 16 4 C -0.06 -0.53 9.74 -39.20 -0.38 -0.92 16 5 C -0.14 -1.63 8.65 -39.45 -0.34 -1.97 16 6 C 0.15 2.06 4.67 -83.77 -0.39 1.67 16 7 N -0.51 -8.23 4.00 -171.10 -0.68 -8.91 16 8 C 0.07 1.07 5.16 -3.83 -0.02 1.05 16 9 C -0.12 -2.06 6.09 -26.65 -0.16 -2.22 16 10 C -0.11 -2.43 5.02 -26.60 -0.13 -2.56 16 11 C 0.06 1.31 2.26 -91.69 -0.21 1.11 16 12 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.52 -13.36 8.56 -34.44 -0.29 -13.66 16 14 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -24.27 11.35 55.43 0.63 -23.64 16 17 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.07 1.39 4.34 -3.83 -0.02 1.37 16 22 C -0.02 -0.30 6.33 -39.38 -0.25 -0.55 16 23 Cl -0.04 -0.52 28.42 -51.86 -1.47 -1.99 16 24 C -0.06 -0.62 9.52 -39.17 -0.37 -0.99 16 25 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 26 H 0.14 1.54 7.10 -52.49 -0.37 1.17 16 27 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 28 H 0.03 0.47 7.50 -51.93 -0.39 0.08 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 2.31 6.15 -51.93 -0.32 1.99 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 35 H 0.03 0.52 7.34 -51.93 -0.38 0.14 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -27.21 318.92 -8.97 -36.18 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.38 Total: -2.71 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -3.62 Total: -14.47 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.72 Total: -37.30 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.47 Total: -1.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.21 -8.97 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894487387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.579 kcal (2) G-P(sol) polarization free energy of solvation -27.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds