Wall clock time and date at job start Tue Mar 31 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39811 * 120.06914 * 154.15751 * 3 2 1 5 5 C 1.37659 * 119.94136 * 179.70150 * 4 3 2 6 6 C 1.39150 * 120.09119 * 0.54459 * 5 4 3 7 7 N 1.39255 * 119.93070 * 179.72134 * 6 5 4 8 8 C 1.46854 * 110.99749 * 63.68414 * 7 6 5 9 9 C 1.53029 * 109.52283 * 174.15962 * 8 7 6 10 10 C 1.53126 * 109.27795 * 59.18140 * 9 8 7 11 11 C 1.53124 * 109.15878 * 302.34185 * 10 9 8 12 12 H 1.09004 * 109.50324 * 297.71684 * 11 10 9 13 13 C 1.50692 * 109.50139 * 177.59632 * 11 10 9 14 14 H 1.07998 * 120.00386 * 240.00243 * 13 11 10 15 15 C 1.37883 * 120.00294 * 60.00402 * 13 11 10 16 16 N 1.31515 * 119.99399 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00099 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47661 * 89.99899 * 17 15 13 19 19 H 1.48504 * 109.46791 * 210.00010 * 17 15 13 20 20 H 1.48501 * 109.47301 * 329.99325 * 17 15 13 21 21 C 1.46843 * 111.00082 * 299.47699 * 7 6 5 22 22 C 1.39251 * 120.14402 * 359.45426 * 6 5 4 23 23 Cl 1.73598 * 119.97633 * 180.29515 * 22 6 5 24 24 C 1.37759 * 120.05360 * 0.26636 * 22 6 5 25 25 H 1.07999 * 120.02991 * 359.96901 * 4 3 2 26 26 H 1.08000 * 119.95530 * 180.27082 * 5 4 3 27 27 H 1.08999 * 109.45788 * 54.14396 * 8 7 6 28 28 H 1.09003 * 109.45264 * 294.17278 * 8 7 6 29 29 H 1.08994 * 109.50822 * 299.23828 * 9 8 7 30 30 H 1.08998 * 109.53380 * 179.13826 * 9 8 7 31 31 H 1.08998 * 109.52297 * 62.25132 * 10 9 8 32 32 H 1.08999 * 109.51925 * 182.44336 * 10 9 8 33 33 H 0.96998 * 119.99547 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.45906 * 305.84755 * 21 7 6 35 35 H 1.08997 * 109.46476 * 65.82300 * 21 7 6 36 36 H 1.08000 * 120.04498 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 1.0899 -0.5274 5 6 4.6446 1.0905 -0.5205 6 6 5.3401 0.0036 0.0003 7 7 6.7327 0.0052 0.0004 8 6 7.2576 1.0847 0.8463 9 6 8.7806 0.9670 0.9392 10 6 9.3812 1.0568 -0.4665 11 6 8.7819 -0.0484 -1.3406 12 1 9.0463 -1.0222 -0.9282 13 6 9.3235 0.0693 -2.7419 14 1 8.6489 0.2295 -3.5699 15 6 10.6803 -0.0277 -2.9671 16 7 11.5019 -0.2224 -1.9587 17 14 11.3517 0.1189 -4.7041 18 1 11.6560 1.5422 -4.9988 19 1 12.5925 -0.6879 -4.8248 20 1 10.3403 -0.3812 -5.6695 21 6 7.2589 0.0988 -1.3674 22 6 4.6467 -1.0832 0.5266 23 17 5.5187 -2.4335 1.1822 24 6 3.2691 -1.0876 0.5279 25 1 2.7293 1.9321 -0.9360 26 1 5.1856 1.9337 -0.9239 27 1 6.8258 1.0068 1.8441 28 1 6.9937 2.0484 0.4105 29 1 9.0449 0.0093 1.3874 30 1 9.1719 1.7771 1.5545 31 1 9.1501 2.0298 -0.8999 32 1 10.4623 0.9299 -0.4093 33 1 12.4564 -0.2902 -2.1171 34 1 6.8280 -0.6952 -1.9773 35 1 6.9950 1.0671 -1.7925 36 1 2.7314 -1.9304 0.9365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894487387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:34 Heat of formation + Delta-G solvation = 34.498336 kcal Electronic energy + Delta-G solvation = -20232.602314 eV Core-core repulsion = 17127.703952 eV Total energy + Delta-G solvation = -3104.898363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 7.34 seconds Orbital eigenvalues (eV) -41.30730 -39.25859 -37.66534 -37.08921 -35.57512 -33.69400 -31.96584 -31.67026 -30.49616 -26.89405 -25.77480 -23.84232 -23.31161 -22.95012 -20.41105 -19.97981 -18.67531 -17.51934 -17.00005 -16.50587 -16.02203 -15.80406 -15.43211 -15.12715 -14.94485 -14.76515 -14.39316 -14.33648 -14.18067 -13.92030 -13.68496 -13.40768 -13.12246 -12.81692 -12.63192 -12.56197 -12.51424 -12.28630 -11.82425 -11.72324 -11.68945 -11.35802 -10.89092 -10.65284 -10.33969 -9.98935 -9.63219 -9.32345 -8.03725 -6.17084 -0.43157 0.14075 1.20486 1.44106 1.46079 1.54919 1.63233 1.76118 2.45677 2.70370 2.73026 2.92750 3.24173 3.77246 3.98636 4.06263 4.20461 4.30762 4.33383 4.48436 4.62671 4.69765 4.72515 4.79550 4.93229 5.01761 5.07399 5.11795 5.21751 5.28107 5.44019 5.48320 5.59556 5.69684 5.95283 6.13416 6.25211 6.37255 6.46035 6.48737 6.95951 7.50909 9.00570 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.004206 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.702364 B = 6655.136070 C = 7017.917515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.286 3.714 3 C -0.029 4.029 4 C -0.038 4.038 5 C -0.141 4.141 6 C 0.129 3.871 7 N -0.516 5.516 8 C 0.074 3.926 9 C -0.110 4.110 10 C -0.104 4.104 11 C 0.055 3.945 12 H -0.004 1.004 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.016 3.984 16 N -0.914 5.914 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.269 1.269 21 C 0.091 3.909 22 C -0.033 4.033 23 Cl -0.055 7.055 24 C -0.049 4.049 25 H 0.165 0.835 26 H 0.148 0.852 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.056 0.944 33 H 0.259 0.741 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 2.812 6.273 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.029 4.029 3 C -0.032 4.032 4 C -0.059 4.059 5 C -0.161 4.161 6 C 0.033 3.967 7 N -0.237 5.237 8 C -0.051 4.051 9 C -0.147 4.147 10 C -0.142 4.142 11 C 0.036 3.964 12 H 0.014 0.986 13 C -0.571 4.571 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.776 3.224 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.194 1.194 21 C -0.035 4.035 22 C -0.061 4.061 23 Cl -0.026 7.026 24 C -0.071 4.071 25 H 0.183 0.817 26 H 0.166 0.834 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.037 2.221 6.572 16.560 hybrid contribution 1.230 0.347 -1.212 1.761 sum -13.807 2.568 5.361 15.032 Atomic orbital electron populations 1.81299 1.12990 1.08745 1.10030 1.25499 0.92235 0.92660 0.92500 1.15780 0.83679 0.97305 1.06471 1.21333 0.93210 0.96935 0.94454 1.21768 0.94714 0.98903 1.00699 1.19118 0.89926 0.92672 0.95000 1.59422 1.03164 1.48249 1.12914 1.22090 0.95262 0.91005 0.96749 1.21574 0.94469 1.01139 0.97565 1.21469 1.01447 0.97452 0.93859 1.18561 0.89671 0.94186 0.93960 0.98616 1.21506 0.92367 1.49317 0.93932 0.92843 1.25656 0.97536 0.94959 1.00128 1.70033 1.03193 1.50369 1.31776 0.85692 0.77748 0.78021 0.80988 1.20130 1.21360 1.19357 1.22039 0.96660 0.98914 0.85845 1.20798 0.91829 0.90736 1.02728 1.98390 1.77031 1.43131 1.84012 1.21060 0.91023 0.98195 0.96798 0.81744 0.83395 0.89720 0.93506 0.93333 0.90864 0.95190 0.92551 0.93205 0.92856 0.94593 0.82195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.82 18.54 19.00 0.35 -10.47 16 2 C 0.29 5.44 15.33 88.33 1.35 6.79 16 3 C -0.03 -0.47 5.74 -21.27 -0.12 -0.60 16 4 C -0.04 -0.58 9.74 22.51 0.22 -0.36 16 5 C -0.14 -2.75 8.65 22.35 0.19 -2.55 16 6 C 0.13 3.25 4.67 38.43 0.18 3.43 16 7 N -0.52 -16.22 4.00 -695.24 -2.78 -19.00 16 8 C 0.07 2.14 5.16 86.32 0.45 2.58 16 9 C -0.11 -3.80 6.09 30.65 0.19 -3.62 16 10 C -0.10 -4.60 5.02 30.68 0.15 -4.45 16 11 C 0.06 2.62 2.26 -11.49 -0.03 2.59 16 12 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 13 C -0.53 -28.11 8.56 25.60 0.22 -27.89 16 14 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 15 C 0.02 0.86 5.30 84.66 0.45 1.31 16 16 N -0.91 -51.70 11.35 21.45 0.24 -51.46 16 17 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 C 0.09 3.44 4.34 86.33 0.37 3.81 16 22 C -0.03 -0.77 6.33 22.40 0.14 -0.63 16 23 Cl -0.05 -1.44 28.42 -2.72 -0.08 -1.52 16 24 C -0.05 -0.88 9.52 22.53 0.21 -0.67 16 25 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 26 H 0.15 2.71 7.10 -2.91 -0.02 2.69 16 27 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 28 H 0.05 1.22 7.50 -2.39 -0.02 1.20 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 2.91 6.15 -2.39 -0.01 2.89 16 33 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.05 2.09 8.11 -2.39 -0.02 2.07 16 35 H 0.04 1.29 7.34 -2.39 -0.02 1.27 16 36 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -60.43 318.92 4.84 -55.59 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.09 Total: 2.57 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 3.98 Total: -20.24 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -2.18 Total: -80.92 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -60.43 4.84 -55.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894487387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.086 kcal (2) G-P(sol) polarization free energy of solvation -60.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.34 seconds