Wall clock time and date at job start Tue Mar 31 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39810 * 120.07545 * 7.49341 * 3 2 1 5 5 C 1.37656 * 119.94488 * 180.02562 * 4 3 2 6 6 C 1.39146 * 120.08993 * 359.97438 * 5 4 3 7 7 N 1.39257 * 119.92900 * 179.97438 * 6 5 4 8 8 C 1.46841 * 111.00164 * 296.06588 * 7 6 5 9 9 C 1.53032 * 109.52431 * 185.83500 * 8 7 6 10 10 C 1.53117 * 109.28156 * 300.82235 * 9 8 7 11 11 C 1.53123 * 109.15731 * 57.65574 * 10 9 8 12 12 H 1.09000 * 109.50770 * 62.32493 * 11 10 9 13 13 C 1.50703 * 109.49838 * 182.40375 * 11 10 9 14 14 H 1.08007 * 119.99906 * 120.00172 * 13 11 10 15 15 C 1.37875 * 120.00278 * 299.99388 * 13 11 10 16 16 N 1.31513 * 119.99829 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99933 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46893 * 90.00511 * 17 15 13 19 19 H 1.48500 * 109.46928 * 210.00158 * 17 15 13 20 20 H 1.48491 * 109.47113 * 330.00228 * 17 15 13 21 21 C 1.46853 * 110.99804 * 60.27975 * 7 6 5 22 22 C 1.39255 * 120.14456 * 359.97438 * 6 5 4 23 23 Cl 1.73607 * 119.97357 * 179.72324 * 22 6 5 24 24 C 1.37755 * 120.05541 * 0.02562 * 22 6 5 25 25 H 1.08000 * 120.02750 * 0.03947 * 4 3 2 26 26 H 1.07997 * 119.95450 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.46658 * 305.85881 * 8 7 6 28 28 H 1.09004 * 109.45943 * 65.83648 * 8 7 6 29 29 H 1.08997 * 109.50189 * 60.76938 * 9 8 7 30 30 H 1.09004 * 109.50372 * 180.88161 * 9 8 7 31 31 H 1.09005 * 109.52506 * 177.55636 * 10 9 8 32 32 H 1.08998 * 109.52530 * 297.68619 * 10 9 8 33 33 H 0.96999 * 119.99998 * 179.97438 * 16 15 13 34 34 H 1.08994 * 109.45901 * 294.17531 * 21 7 6 35 35 H 1.08997 * 109.46193 * 54.14583 * 21 7 6 36 36 H 1.08002 * 120.04773 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2692 -1.1986 -0.1578 5 6 4.6458 -1.1949 -0.1568 6 6 5.3401 0.0006 0.0004 7 7 6.7327 0.0004 0.0013 8 6 7.2580 -0.7570 1.1444 9 6 8.7809 -0.6148 1.1958 10 6 9.3823 -1.1423 -0.1097 11 6 8.7826 -0.3694 -1.2877 12 1 9.0465 0.6848 -1.2035 13 6 9.3251 -0.9222 -2.5804 14 1 8.6509 -1.3358 -3.3160 15 6 10.6819 -0.8999 -2.8243 16 7 11.5028 -0.3967 -1.9285 17 14 11.3541 -1.5846 -4.4271 18 1 11.4051 -0.5038 -5.4442 19 1 12.7218 -2.1179 -4.2025 20 1 10.4700 -2.6762 -4.9085 21 6 7.2597 -0.5189 -1.2672 22 6 4.6455 1.1974 0.1567 23 17 5.5163 2.6855 0.3598 24 6 3.2680 1.2006 0.1567 25 1 2.7313 -2.1270 -0.2805 26 1 5.1876 -2.1211 -0.2791 27 1 6.8256 -0.3692 2.0668 28 1 6.9953 -1.8092 1.0345 29 1 9.0442 0.4357 1.3196 30 1 9.1720 -1.1898 2.0352 31 1 10.4633 -1.0030 -0.0952 32 1 9.1530 -2.2028 -0.2140 33 1 12.4574 -0.3813 -2.0999 34 1 6.9968 -1.5721 -1.3656 35 1 6.8286 0.0420 -2.0963 36 1 2.7294 2.1289 0.2776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894487388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:48 Heat of formation + Delta-G solvation = 47.395232 kcal Electronic energy + Delta-G solvation = -20231.953498 eV Core-core repulsion = 17127.614387 eV Total energy + Delta-G solvation = -3104.339111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 3.86 seconds Orbital eigenvalues (eV) -40.25441 -38.05108 -36.64862 -36.08462 -33.97490 -32.10713 -31.10179 -30.03224 -29.33709 -25.03185 -24.57111 -22.94913 -21.98586 -21.45086 -19.28041 -18.65380 -17.13267 -16.09649 -15.84256 -15.13423 -14.79305 -14.47220 -14.16780 -14.08182 -14.05662 -13.46428 -13.17556 -13.00155 -12.79343 -12.56472 -12.41722 -12.15319 -11.80725 -11.67316 -11.33766 -11.00113 -10.81620 -10.75490 -10.68527 -10.21960 -9.95633 -9.59356 -9.24266 -9.09961 -8.85627 -8.61145 -8.37332 -8.05495 -6.02475 -4.09053 0.47316 0.98903 2.14827 2.52517 2.66572 3.28322 3.35540 3.37648 3.56811 3.65185 4.02866 4.42169 4.60378 4.75560 5.03003 5.19456 5.28291 5.45629 5.55829 5.58850 5.69200 5.89878 5.93060 6.01296 6.10995 6.27333 6.33973 6.39687 6.60263 6.63643 6.84903 7.07791 7.24512 7.30225 7.40552 7.68118 7.71697 8.00646 8.10216 8.39651 8.94530 9.55796 11.03417 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.004206 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.496495 B = 6655.123426 C = 7019.260917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.263 3.737 3 C -0.037 4.037 4 C -0.056 4.056 5 C -0.143 4.143 6 C 0.151 3.849 7 N -0.507 5.507 8 C 0.070 3.930 9 C -0.117 4.117 10 C -0.112 4.112 11 C 0.057 3.943 12 H 0.038 0.962 13 C -0.517 4.517 14 H 0.054 0.946 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.073 3.927 22 C -0.023 4.023 23 Cl -0.039 7.039 24 C -0.060 4.060 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.062 0.938 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 0.485 6.578 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.053 4.053 3 C -0.041 4.041 4 C -0.077 4.077 5 C -0.163 4.163 6 C 0.055 3.945 7 N -0.229 5.229 8 C -0.056 4.056 9 C -0.155 4.155 10 C -0.150 4.150 11 C 0.038 3.962 12 H 0.056 0.944 13 C -0.555 4.555 14 H 0.072 0.928 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.051 4.051 22 C -0.052 4.052 23 Cl -0.009 7.009 24 C -0.082 4.082 25 H 0.153 0.847 26 H 0.159 0.841 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.060 1.131 6.675 14.711 hybrid contribution 0.672 -1.081 -0.982 1.607 sum -12.388 0.051 5.694 13.634 Atomic orbital electron populations 1.81256 1.11973 1.07295 1.09243 1.25570 0.92448 0.93745 0.93493 1.15799 0.84290 0.94548 1.09439 1.21094 0.93954 0.96665 0.96037 1.21749 0.94041 0.99119 1.01417 1.19087 0.91386 0.90757 0.93296 1.59658 1.01057 1.56497 1.05659 1.22111 0.97337 0.94577 0.91559 1.21686 0.92457 1.01725 0.99622 1.21682 1.03587 0.97452 0.92288 1.18667 0.86426 0.97296 0.93812 0.94437 1.21098 0.92061 1.40283 1.02083 0.92792 1.24911 0.97058 0.95195 0.96520 1.69879 1.03213 1.45427 1.34006 0.86631 0.78274 0.79270 0.84028 1.20685 1.21278 1.20004 1.22467 0.99750 0.96151 0.86781 1.20757 0.91195 0.88421 1.04782 1.98394 1.76606 1.30624 1.95309 1.20935 0.91944 0.97611 0.97694 0.84665 0.84115 0.91947 0.94984 0.91734 0.93086 0.88886 0.95009 0.92989 0.95365 0.91811 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.52 18.54 41.84 0.78 -4.75 16 2 C 0.26 2.90 15.33 -22.47 -0.34 2.56 16 3 C -0.04 -0.37 5.74 -106.80 -0.61 -0.98 16 4 C -0.06 -0.54 9.74 -39.21 -0.38 -0.92 16 5 C -0.14 -1.63 8.66 -39.46 -0.34 -1.97 16 6 C 0.15 2.06 4.67 -83.77 -0.39 1.67 16 7 N -0.51 -8.23 3.99 -171.11 -0.68 -8.91 16 8 C 0.07 1.07 5.16 -3.84 -0.02 1.05 16 9 C -0.12 -2.05 6.09 -26.65 -0.16 -2.22 16 10 C -0.11 -2.43 5.02 -26.61 -0.13 -2.56 16 11 C 0.06 1.31 2.27 -91.69 -0.21 1.10 16 12 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.52 -13.36 8.56 -34.44 -0.29 -13.66 16 14 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -24.27 11.35 55.43 0.63 -23.64 16 17 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.07 1.39 4.34 -3.83 -0.02 1.37 16 22 C -0.02 -0.30 6.33 -39.38 -0.25 -0.54 16 23 Cl -0.04 -0.52 28.42 -51.86 -1.47 -2.00 16 24 C -0.06 -0.62 9.52 -39.17 -0.37 -0.99 16 25 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 26 H 0.14 1.54 7.10 -52.49 -0.37 1.17 16 27 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.03 0.47 7.52 -51.93 -0.39 0.08 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 2.31 6.15 -51.93 -0.32 1.99 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.03 0.52 7.32 -51.93 -0.38 0.14 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -27.21 318.93 -8.97 -36.18 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.38 Total: -2.71 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -3.62 Total: -14.47 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.72 Total: -37.30 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.47 Total: -2.00 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.21 -8.97 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894487388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.576 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds