Wall clock time and date at job start Tue Mar 31 2020 06:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39810 * 120.07545 * 7.49341 * 3 2 1 5 5 C 1.37656 * 119.94488 * 180.02562 * 4 3 2 6 6 C 1.39146 * 120.08993 * 359.97438 * 5 4 3 7 7 N 1.39257 * 119.92900 * 179.97438 * 6 5 4 8 8 C 1.46841 * 111.00164 * 296.06588 * 7 6 5 9 9 C 1.53032 * 109.52431 * 185.83500 * 8 7 6 10 10 C 1.53117 * 109.28156 * 300.82235 * 9 8 7 11 11 C 1.53123 * 109.15731 * 57.65574 * 10 9 8 12 12 H 1.09000 * 109.50770 * 62.32493 * 11 10 9 13 13 C 1.50703 * 109.49838 * 182.40375 * 11 10 9 14 14 H 1.08007 * 119.99906 * 120.00172 * 13 11 10 15 15 C 1.37875 * 120.00278 * 299.99388 * 13 11 10 16 16 N 1.31513 * 119.99829 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99933 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46893 * 90.00511 * 17 15 13 19 19 H 1.48500 * 109.46928 * 210.00158 * 17 15 13 20 20 H 1.48491 * 109.47113 * 330.00228 * 17 15 13 21 21 C 1.46853 * 110.99804 * 60.27975 * 7 6 5 22 22 C 1.39255 * 120.14456 * 359.97438 * 6 5 4 23 23 Cl 1.73607 * 119.97357 * 179.72324 * 22 6 5 24 24 C 1.37755 * 120.05541 * 0.02562 * 22 6 5 25 25 H 1.08000 * 120.02750 * 0.03947 * 4 3 2 26 26 H 1.07997 * 119.95450 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.46658 * 305.85881 * 8 7 6 28 28 H 1.09004 * 109.45943 * 65.83648 * 8 7 6 29 29 H 1.08997 * 109.50189 * 60.76938 * 9 8 7 30 30 H 1.09004 * 109.50372 * 180.88161 * 9 8 7 31 31 H 1.09005 * 109.52506 * 177.55636 * 10 9 8 32 32 H 1.08998 * 109.52530 * 297.68619 * 10 9 8 33 33 H 0.96999 * 119.99998 * 179.97438 * 16 15 13 34 34 H 1.08994 * 109.45901 * 294.17531 * 21 7 6 35 35 H 1.08997 * 109.46193 * 54.14583 * 21 7 6 36 36 H 1.08002 * 120.04773 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2692 -1.1986 -0.1578 5 6 4.6458 -1.1949 -0.1568 6 6 5.3401 0.0006 0.0004 7 7 6.7327 0.0004 0.0013 8 6 7.2580 -0.7570 1.1444 9 6 8.7809 -0.6148 1.1958 10 6 9.3823 -1.1423 -0.1097 11 6 8.7826 -0.3694 -1.2877 12 1 9.0465 0.6848 -1.2035 13 6 9.3251 -0.9222 -2.5804 14 1 8.6509 -1.3358 -3.3160 15 6 10.6819 -0.8999 -2.8243 16 7 11.5028 -0.3967 -1.9285 17 14 11.3541 -1.5846 -4.4271 18 1 11.4051 -0.5038 -5.4442 19 1 12.7218 -2.1179 -4.2025 20 1 10.4700 -2.6762 -4.9085 21 6 7.2597 -0.5189 -1.2672 22 6 4.6455 1.1974 0.1567 23 17 5.5163 2.6855 0.3598 24 6 3.2680 1.2006 0.1567 25 1 2.7313 -2.1270 -0.2805 26 1 5.1876 -2.1211 -0.2791 27 1 6.8256 -0.3692 2.0668 28 1 6.9953 -1.8092 1.0345 29 1 9.0442 0.4357 1.3196 30 1 9.1720 -1.1898 2.0352 31 1 10.4633 -1.0030 -0.0952 32 1 9.1530 -2.2028 -0.2140 33 1 12.4574 -0.3813 -2.0999 34 1 6.9968 -1.5721 -1.3656 35 1 6.8286 0.0420 -2.0963 36 1 2.7294 2.1289 0.2776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894487388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:47 Heat of formation + Delta-G solvation = 34.499584 kcal Electronic energy + Delta-G solvation = -20232.512696 eV Core-core repulsion = 17127.614387 eV Total energy + Delta-G solvation = -3104.898309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30737 -39.25844 -37.66474 -37.08894 -35.57490 -33.69435 -31.96637 -31.66993 -30.49601 -26.89415 -25.77496 -23.84197 -23.31285 -22.94879 -20.41066 -19.97960 -18.67517 -17.51933 -17.00034 -16.50520 -16.02170 -15.80360 -15.43176 -15.12697 -14.94507 -14.76472 -14.39191 -14.33702 -14.18096 -13.92043 -13.68460 -13.40798 -13.12236 -12.83628 -12.60770 -12.56258 -12.51379 -12.28380 -11.83219 -11.72346 -11.69112 -11.35703 -10.88891 -10.64668 -10.34411 -9.98980 -9.63291 -9.32255 -8.03676 -6.17076 -0.43166 0.14094 1.20418 1.44356 1.46067 1.54773 1.63244 1.76113 2.45679 2.70290 2.73090 2.92743 3.24265 3.77246 3.98641 4.06250 4.20501 4.30746 4.33408 4.48470 4.62705 4.69740 4.72572 4.79560 4.93271 5.01794 5.07391 5.11805 5.21777 5.28123 5.44000 5.48339 5.59611 5.69644 5.95334 6.13417 6.25211 6.37261 6.46033 6.48739 6.95953 7.50954 9.00618 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.004206 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.496495 B = 6655.123426 C = 7019.260917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.286 3.714 3 C -0.028 4.028 4 C -0.038 4.038 5 C -0.141 4.141 6 C 0.129 3.871 7 N -0.516 5.516 8 C 0.074 3.926 9 C -0.110 4.110 10 C -0.104 4.104 11 C 0.055 3.945 12 H -0.004 1.004 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.016 3.984 16 N -0.914 5.914 17 Si 0.949 3.051 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.091 3.909 22 C -0.033 4.033 23 Cl -0.055 7.055 24 C -0.049 4.049 25 H 0.165 0.835 26 H 0.148 0.852 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.259 0.741 34 H 0.036 0.964 35 H 0.053 0.947 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.734 -0.709 6.832 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.029 4.029 3 C -0.032 4.032 4 C -0.059 4.059 5 C -0.161 4.161 6 C 0.033 3.967 7 N -0.238 5.238 8 C -0.051 4.051 9 C -0.147 4.147 10 C -0.142 4.142 11 C 0.036 3.964 12 H 0.014 0.986 13 C -0.571 4.571 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.775 3.225 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.035 4.035 22 C -0.061 4.061 23 Cl -0.026 7.026 24 C -0.071 4.071 25 H 0.183 0.817 26 H 0.166 0.834 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.044 -0.063 6.934 16.565 hybrid contribution 1.231 -0.691 -1.049 1.758 sum -13.813 -0.753 5.885 15.034 Atomic orbital electron populations 1.81300 1.12989 1.08380 1.10395 1.25500 0.92235 0.92705 0.92454 1.15780 0.83679 0.94708 1.09064 1.21332 0.93196 0.97570 0.93831 1.21766 0.94727 0.98373 1.01221 1.19117 0.89925 0.92053 0.95617 1.59419 1.03135 1.56699 1.04497 1.22088 0.95264 0.95573 0.92178 1.21575 0.94467 1.00749 0.97954 1.21464 1.01444 0.97191 0.94120 1.18561 0.89673 0.94647 0.93504 0.98622 1.21510 0.92373 1.39972 1.03264 0.92836 1.25653 0.97536 0.95673 0.99411 1.70031 1.03227 1.46537 1.35585 0.85694 0.77612 0.78727 0.80431 1.20576 1.21169 1.19101 1.22039 0.96649 0.96495 0.88275 1.20798 0.91832 0.87536 1.05917 1.98391 1.77103 1.31592 1.95482 1.21060 0.91033 0.98628 0.96357 0.81744 0.83405 0.89721 0.93516 0.93331 0.90863 0.92559 0.95177 0.93203 0.94601 0.92835 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.82 18.54 19.01 0.35 -10.47 16 2 C 0.29 5.44 15.33 88.33 1.35 6.79 16 3 C -0.03 -0.47 5.74 -21.27 -0.12 -0.59 16 4 C -0.04 -0.58 9.74 22.51 0.22 -0.36 16 5 C -0.14 -2.75 8.66 22.35 0.19 -2.55 16 6 C 0.13 3.25 4.67 38.43 0.18 3.43 16 7 N -0.52 -16.22 3.99 -695.26 -2.78 -18.99 16 8 C 0.07 2.14 5.16 86.33 0.45 2.58 16 9 C -0.11 -3.80 6.09 30.64 0.19 -3.62 16 10 C -0.10 -4.60 5.02 30.67 0.15 -4.45 16 11 C 0.05 2.62 2.27 -11.49 -0.03 2.59 16 12 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 13 C -0.53 -28.11 8.56 25.60 0.22 -27.89 16 14 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 15 C 0.02 0.87 5.30 84.65 0.45 1.32 16 16 N -0.91 -51.71 11.35 21.45 0.24 -51.46 16 17 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 C 0.09 3.44 4.34 86.32 0.37 3.81 16 22 C -0.03 -0.77 6.33 22.40 0.14 -0.62 16 23 Cl -0.05 -1.44 28.42 -2.72 -0.08 -1.52 16 24 C -0.05 -0.88 9.52 22.53 0.21 -0.67 16 25 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 26 H 0.15 2.72 7.10 -2.91 -0.02 2.70 16 27 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 28 H 0.05 1.22 7.52 -2.39 -0.02 1.20 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 31 H 0.06 2.90 6.15 -2.38 -0.01 2.89 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.04 1.28 7.32 -2.39 -0.02 1.27 16 35 H 0.05 2.10 8.10 -2.39 -0.02 2.08 16 36 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -60.42 318.93 4.84 -55.58 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.09 Total: 2.57 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 3.98 Total: -20.22 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -2.18 Total: -80.93 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -60.42 4.84 -55.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894487388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.079 kcal (2) G-P(sol) polarization free energy of solvation -60.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds