Wall clock time and date at job start Tue Mar 31 2020 08:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99741 * 2 1 4 4 H 1.48497 * 109.47176 * 269.99716 * 3 2 1 5 5 H 1.48509 * 109.47077 * 29.99633 * 3 2 1 6 6 H 1.48502 * 109.47119 * 149.99420 * 3 2 1 7 7 C 1.37869 * 120.00600 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99718 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99894 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46820 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.46980 * 64.99994 * 12 11 10 14 14 C 1.34854 * 117.00013 * 179.97438 * 13 12 11 15 15 O 1.21566 * 119.99976 * 359.97438 * 14 13 12 16 16 C 1.47111 * 119.99754 * 179.72423 * 14 13 12 17 17 C 1.38526 * 120.03484 * 180.02562 * 16 14 13 18 18 C 1.40606 * 118.26869 * 180.02562 * 17 16 14 19 19 C 1.38290 * 133.39447 * 180.02562 * 18 17 16 20 20 C 1.39665 * 106.98825 * 179.97438 * 19 18 17 21 21 C 1.35657 * 108.08871 * 359.97438 * 20 19 18 22 22 N 1.35896 * 109.06617 * 0.02562 * 21 20 19 23 23 C 1.36922 * 132.41604 * 180.02562 * 22 21 20 24 24 N 1.29781 * 121.48515 * 179.69208 * 23 22 21 25 25 H 0.97003 * 120.00702 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47059 * 60.00329 * 9 7 2 27 27 H 1.09000 * 109.47289 * 300.00336 * 9 7 2 28 28 H 1.09005 * 109.47519 * 59.99948 * 11 10 9 29 29 H 1.08999 * 109.47239 * 299.99472 * 11 10 9 30 30 H 1.08997 * 109.47282 * 305.00172 * 12 11 10 31 31 H 1.09002 * 109.47256 * 184.99399 * 12 11 10 32 32 H 1.08003 * 120.86384 * 0.02562 * 17 16 14 33 33 H 1.07996 * 126.50796 * 359.93585 * 19 18 17 34 34 H 1.08002 * 125.95258 * 179.97438 * 20 19 18 35 35 H 1.07998 * 125.46750 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.25484 * 359.95281 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8753 0.0013 12 6 2.6483 -5.9560 0.0020 13 8 3.3987 -5.8884 1.2432 14 6 4.3973 -6.7802 1.4043 15 8 4.6338 -7.5923 0.5311 16 6 5.2041 -6.7667 2.6344 17 6 6.2305 -7.6821 2.8004 18 6 6.9776 -7.6363 3.9907 19 6 8.0409 -8.3767 4.4741 20 6 8.3607 -7.8588 5.7312 21 6 7.5109 -6.8344 5.9933 22 7 6.6603 -6.6837 4.9442 23 6 5.6312 -5.8121 4.7074 24 7 4.9473 -5.8542 3.6053 25 1 -0.4851 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8898 27 1 0.6241 -2.5567 0.8902 28 1 0.9461 -4.9826 -0.8894 29 1 0.9442 -4.9823 0.8906 30 1 3.3225 -5.7954 -0.8393 31 1 2.1825 -6.9374 -0.0878 32 1 6.4511 -8.4120 2.0355 33 1 8.5306 -9.1995 3.9747 34 1 9.1474 -8.2124 6.3812 35 1 7.5104 -6.2347 6.8915 36 1 5.3859 -5.0701 5.4528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909543545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:23 Heat of formation + Delta-G solvation = -41.897738 kcal Electronic energy + Delta-G solvation = -21521.057954 eV Core-core repulsion = 17972.137644 eV Total energy + Delta-G solvation = -3548.920310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.71763 -40.25567 -37.89891 -36.99040 -36.00241 -33.51736 -32.74334 -31.35208 -30.21842 -28.81607 -26.90695 -25.05345 -24.06938 -22.44950 -22.10487 -21.55577 -20.89513 -19.10075 -17.70065 -17.00529 -16.57080 -16.39324 -16.13099 -15.98083 -15.68684 -15.24736 -14.68236 -14.58239 -14.32137 -13.81830 -13.15870 -13.12337 -12.97935 -12.82122 -12.54907 -12.42649 -11.93674 -11.39802 -11.00199 -10.96254 -10.85976 -10.80359 -10.68382 -10.37166 -10.31768 -10.02251 -9.34109 -9.09856 -8.84278 -8.17864 -7.92114 -6.09479 -4.10767 -0.00253 0.85049 2.18881 2.26067 2.49949 2.61694 3.31650 3.36182 3.36332 3.42381 3.70722 4.22764 4.33024 4.35255 4.45547 4.75183 4.77643 4.82760 5.06276 5.20712 5.24520 5.27064 5.31563 5.48912 5.65950 5.78260 5.89960 5.96234 6.11816 6.16328 6.30291 6.49925 6.71166 7.08880 7.32919 7.43487 7.80513 7.82504 8.15693 8.56316 9.02109 9.53776 11.02169 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.003139 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.870003 B = 8918.192773 C =10076.461189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.063 3.937 12 C 0.072 3.928 13 O -0.315 6.315 14 C 0.529 3.471 15 O -0.511 6.511 16 C 0.027 3.973 17 C -0.030 4.030 18 C 0.019 3.981 19 C -0.164 4.164 20 C -0.150 4.150 21 C -0.019 4.019 22 N -0.389 5.389 23 C 0.308 3.692 24 N -0.440 5.440 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.179 0.821 36 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.848 -17.515 12.100 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.015 4.015 12 C -0.002 4.002 13 O -0.230 6.230 14 C 0.373 3.627 15 O -0.401 6.401 16 C -0.088 4.088 17 C -0.051 4.051 18 C -0.086 4.086 19 C -0.190 4.190 20 C -0.173 4.173 21 C -0.151 4.151 22 N -0.061 5.061 23 C 0.025 3.975 24 N -0.151 5.151 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.196 0.804 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 12.980 -16.865 11.452 24.168 hybrid contribution 0.579 0.346 0.017 0.674 sum 13.559 -16.520 11.469 24.255 Atomic orbital electron populations 1.69960 1.06091 1.27149 1.50686 1.24942 0.94981 0.99419 0.95171 0.86332 0.79689 0.82226 0.78218 1.20480 1.21066 1.19611 1.21054 0.94108 0.89319 1.50651 0.91531 1.20231 0.88743 0.83515 0.95471 1.87928 1.35248 1.12574 1.95212 1.22306 0.93158 0.85457 1.00573 1.23308 0.93773 0.98970 0.84127 1.86806 1.42493 1.52583 1.41093 1.20219 0.78936 0.78492 0.85039 1.90862 1.68567 1.38459 1.42174 1.19763 0.98204 0.96873 0.94001 1.21675 0.91097 0.97197 0.95172 1.18812 1.01767 0.96317 0.91689 1.21190 0.98088 1.02758 0.96964 1.21082 1.01224 0.97545 0.97422 1.22076 0.95129 1.04218 0.93637 1.43330 1.23569 1.23786 1.15425 1.25031 0.84194 0.92464 0.95782 1.68384 1.25566 1.21223 0.99943 0.92663 0.97642 0.97469 0.91873 0.93113 0.90335 0.90279 0.81665 0.82948 0.82908 0.80414 0.77092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.16 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -15.47 9.43 -34.44 -0.32 -15.79 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.45 5.69 36.01 0.20 5.66 16 10 O -0.39 -9.81 10.30 -38.81 -0.40 -10.21 16 11 C 0.06 1.20 6.33 37.16 0.24 1.43 16 12 C 0.07 1.21 5.86 37.16 0.22 1.43 16 13 O -0.32 -5.88 10.02 -43.70 -0.44 -6.31 16 14 C 0.53 8.89 7.92 34.33 0.27 9.16 16 15 O -0.51 -8.80 16.13 -19.31 -0.31 -9.11 16 16 C 0.03 0.40 6.78 -82.45 -0.56 -0.16 16 17 C -0.03 -0.36 9.72 -38.58 -0.38 -0.73 16 18 C 0.02 0.20 6.78 -83.95 -0.57 -0.37 16 19 C -0.16 -1.36 10.98 -39.03 -0.43 -1.78 16 20 C -0.15 -1.01 10.80 -39.97 -0.43 -1.44 16 21 C -0.02 -0.13 11.61 -16.67 -0.19 -0.32 16 22 N -0.39 -3.71 2.95 -62.17 -0.18 -3.90 16 23 C 0.31 3.15 12.16 -89.22 -1.08 2.06 16 24 N -0.44 -6.32 10.17 -10.44 -0.11 -6.42 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.17 1.68 7.66 -52.48 -0.40 1.27 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -36.35 328.08 -8.09 -44.44 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -4.17 Total: -4.79 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -3.13 Total: 0.68 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.45 Total: -36.78 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.15 Total: -25.63 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.35 -8.09 -44.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909543545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.543 kcal (2) G-P(sol) polarization free energy of solvation -36.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds