Wall clock time and date at job start Tue Mar 31 2020 08:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99741 * 2 1 4 4 H 1.48497 * 109.47176 * 269.99716 * 3 2 1 5 5 H 1.48509 * 109.47077 * 29.99633 * 3 2 1 6 6 H 1.48502 * 109.47119 * 149.99420 * 3 2 1 7 7 C 1.37869 * 120.00600 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99718 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99894 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46820 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.46980 * 64.99994 * 12 11 10 14 14 C 1.34854 * 117.00013 * 179.97438 * 13 12 11 15 15 O 1.21566 * 119.99976 * 359.97438 * 14 13 12 16 16 C 1.47111 * 119.99754 * 179.72423 * 14 13 12 17 17 C 1.38526 * 120.03484 * 180.02562 * 16 14 13 18 18 C 1.40606 * 118.26869 * 180.02562 * 17 16 14 19 19 C 1.38290 * 133.39447 * 180.02562 * 18 17 16 20 20 C 1.39665 * 106.98825 * 179.97438 * 19 18 17 21 21 C 1.35657 * 108.08871 * 359.97438 * 20 19 18 22 22 N 1.35896 * 109.06617 * 0.02562 * 21 20 19 23 23 C 1.36922 * 132.41604 * 180.02562 * 22 21 20 24 24 N 1.29781 * 121.48515 * 179.69208 * 23 22 21 25 25 H 0.97003 * 120.00702 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47059 * 60.00329 * 9 7 2 27 27 H 1.09000 * 109.47289 * 300.00336 * 9 7 2 28 28 H 1.09005 * 109.47519 * 59.99948 * 11 10 9 29 29 H 1.08999 * 109.47239 * 299.99472 * 11 10 9 30 30 H 1.08997 * 109.47282 * 305.00172 * 12 11 10 31 31 H 1.09002 * 109.47256 * 184.99399 * 12 11 10 32 32 H 1.08003 * 120.86384 * 0.02562 * 17 16 14 33 33 H 1.07996 * 126.50796 * 359.93585 * 19 18 17 34 34 H 1.08002 * 125.95258 * 179.97438 * 20 19 18 35 35 H 1.07998 * 125.46750 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.25484 * 359.95281 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8753 0.0013 12 6 2.6483 -5.9560 0.0020 13 8 3.3987 -5.8884 1.2432 14 6 4.3973 -6.7802 1.4043 15 8 4.6338 -7.5923 0.5311 16 6 5.2041 -6.7667 2.6344 17 6 6.2305 -7.6821 2.8004 18 6 6.9776 -7.6363 3.9907 19 6 8.0409 -8.3767 4.4741 20 6 8.3607 -7.8588 5.7312 21 6 7.5109 -6.8344 5.9933 22 7 6.6603 -6.6837 4.9442 23 6 5.6312 -5.8121 4.7074 24 7 4.9473 -5.8542 3.6053 25 1 -0.4851 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8898 27 1 0.6241 -2.5567 0.8902 28 1 0.9461 -4.9826 -0.8894 29 1 0.9442 -4.9823 0.8906 30 1 3.3225 -5.7954 -0.8393 31 1 2.1825 -6.9374 -0.0878 32 1 6.4511 -8.4120 2.0355 33 1 8.5306 -9.1995 3.9747 34 1 9.1474 -8.2124 6.3812 35 1 7.5104 -6.2347 6.8915 36 1 5.3859 -5.0701 5.4528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909543545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:22 Heat of formation + Delta-G solvation = -64.089562 kcal Electronic energy + Delta-G solvation = -21522.020263 eV Core-core repulsion = 17972.137644 eV Total energy + Delta-G solvation = -3549.882620 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.40354 -41.49329 -38.94497 -38.49927 -37.49100 -34.96505 -34.29599 -32.11221 -31.71317 -29.75573 -28.97290 -25.94008 -24.94848 -24.54912 -23.50948 -22.37553 -21.81112 -20.02129 -18.75919 -18.53246 -18.13946 -17.98167 -17.18033 -17.00911 -16.68890 -16.56920 -16.32255 -16.15294 -15.41247 -15.23822 -14.57356 -14.37921 -13.86397 -13.72771 -13.56811 -13.41174 -13.34059 -13.21615 -12.93620 -12.72277 -12.49693 -12.12069 -11.91364 -11.81013 -11.77478 -11.30577 -11.24916 -10.91335 -10.29266 -9.96394 -8.65967 -8.33674 -6.46125 -0.86528 0.12564 1.18983 1.38630 1.41862 1.47416 1.54066 1.55037 1.93806 2.33543 2.46604 2.88741 2.99858 3.04225 3.43868 3.55123 3.80552 3.88259 3.95996 4.06476 4.18575 4.34454 4.38994 4.46123 4.54477 4.57553 4.69328 4.82744 5.12508 5.14442 5.16509 5.21734 5.47617 5.52433 5.70868 5.93357 6.12689 6.38261 6.48786 6.74006 6.77809 7.25358 8.78714 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.003139 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.870003 B = 8918.192773 C =10076.461189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.551 4.551 8 H 0.057 0.943 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.055 3.945 12 C 0.074 3.926 13 O -0.341 6.341 14 C 0.526 3.474 15 O -0.529 6.529 16 C -0.022 4.022 17 C -0.008 4.008 18 C -0.030 4.030 19 C -0.144 4.144 20 C -0.157 4.157 21 C 0.006 3.994 22 N -0.401 5.401 23 C 0.318 3.682 24 N -0.490 5.490 25 H 0.272 0.728 26 H -0.006 1.006 27 H -0.012 1.012 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.186 0.814 35 H 0.218 0.782 36 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.103 -17.499 14.205 27.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.134 3.866 10 O -0.330 6.330 11 C -0.021 4.021 12 C 0.001 3.999 13 O -0.256 6.256 14 C 0.373 3.627 15 O -0.420 6.420 16 C -0.136 4.136 17 C -0.030 4.030 18 C -0.133 4.133 19 C -0.171 4.171 20 C -0.179 4.179 21 C -0.126 4.126 22 N -0.075 5.075 23 C 0.035 3.965 24 N -0.202 5.202 25 H 0.081 0.919 26 H 0.011 0.989 27 H 0.006 0.994 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.190 0.810 33 H 0.190 0.810 34 H 0.204 0.796 35 H 0.235 0.765 36 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 15.227 -16.887 13.537 26.463 hybrid contribution 0.052 0.171 -0.426 0.462 sum 15.279 -16.716 13.110 26.168 Atomic orbital electron populations 1.70057 1.07669 1.28746 1.50336 1.25952 0.96013 1.03326 0.93798 0.85179 0.78318 0.76965 0.78908 1.19178 1.19562 1.19106 1.21369 0.93982 0.90997 1.52540 0.92434 1.19875 0.88546 0.84367 0.93855 1.87875 1.35602 1.14244 1.95322 1.22632 0.94350 0.83298 1.01843 1.23310 0.93263 0.99497 0.83804 1.86787 1.43489 1.53758 1.41604 1.20681 0.78442 0.77721 0.85870 1.90815 1.69100 1.39045 1.43051 1.19545 1.00222 0.99644 0.94188 1.21789 0.89694 0.95720 0.95764 1.19011 1.03557 0.98491 0.92204 1.21697 0.96203 1.01867 0.97286 1.21590 1.01944 0.97257 0.97099 1.22968 0.92832 1.03348 0.93430 1.43509 1.24086 1.23803 1.16054 1.25627 0.83355 0.92420 0.95101 1.68247 1.27930 1.22555 1.01488 0.91916 0.98851 0.99392 0.89542 0.92772 0.90764 0.87008 0.81041 0.81038 0.79649 0.76513 0.73509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.44 0.28 -56.34 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.98 45.33 29.54 68.60 2.03 47.35 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.55 -34.13 9.43 25.60 0.24 -33.89 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 12.16 5.69 71.24 0.41 12.57 16 10 O -0.41 -21.50 10.30 -145.56 -1.50 -23.00 16 11 C 0.06 2.18 6.33 71.98 0.46 2.64 16 12 C 0.07 2.59 5.86 71.98 0.42 3.01 16 13 O -0.34 -13.44 10.02 -55.01 -0.55 -13.99 16 14 C 0.53 18.82 7.92 70.15 0.56 19.38 16 15 O -0.53 -19.14 16.13 19.62 0.32 -18.82 16 16 C -0.02 -0.69 6.78 40.95 0.28 -0.41 16 17 C -0.01 -0.20 9.72 22.92 0.22 0.02 16 18 C -0.03 -0.60 6.78 38.68 0.26 -0.34 16 19 C -0.14 -1.96 10.98 22.63 0.25 -1.71 16 20 C -0.16 -1.43 10.80 22.02 0.24 -1.19 16 21 C 0.01 0.06 11.61 83.47 0.97 1.03 16 22 N -0.40 -6.85 2.95 -350.62 -1.04 -7.89 16 23 C 0.32 6.25 12.16 179.86 2.19 8.44 16 24 N -0.49 -14.66 10.17 -186.94 -1.90 -16.56 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 28 H 0.09 2.97 8.14 -2.38 -0.02 2.96 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.17 3.63 7.66 -2.91 -0.02 3.61 16 33 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 35 H 0.22 0.22 8.06 -2.91 -0.02 0.19 16 36 H 0.25 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -82.01 328.08 5.68 -76.33 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.09 Total: 2.45 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.95 Total: 10.47 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.65 Total: -80.79 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -1.73 Total: -55.82 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -82.01 5.68 -76.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909543545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.239 kcal (2) G-P(sol) polarization free energy of solvation -82.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds