Wall clock time and date at job start Tue Mar 31 2020 08:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47066 * 269.99771 * 3 2 1 5 5 H 1.48497 * 109.46938 * 29.99504 * 3 2 1 6 6 H 1.48496 * 109.47379 * 149.99633 * 3 2 1 7 7 C 1.37875 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00272 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00318 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99481 * 359.97438 * 11 10 9 13 13 C 1.47633 * 120.00370 * 179.97438 * 11 10 9 14 14 C 1.39969 * 119.98933 * 359.97438 * 13 11 10 15 15 C 1.37704 * 120.36633 * 179.86254 * 14 13 11 16 16 C 1.38738 * 120.11506 * 0.02562 * 15 14 13 17 17 C 1.40653 * 119.92780 * 0.22665 * 16 15 14 18 18 C 1.38949 * 119.99479 * 359.66173 * 17 16 15 19 19 C 1.47586 * 118.96145 * 179.62063 * 17 16 15 20 20 O 1.21591 * 120.60012 * 227.87450 * 19 17 16 21 21 N 1.35475 * 118.80101 * 47.89627 * 19 17 16 22 22 C 1.46401 * 119.55595 * 4.88601 * 21 19 17 23 23 C 1.52277 * 110.74329 * 285.01086 * 22 21 19 24 24 O 1.35525 * 120.86539 * 180.46016 * 16 15 14 25 25 H 0.96997 * 120.00265 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47362 * 59.99321 * 9 7 2 27 27 H 1.08999 * 109.46787 * 299.99407 * 9 7 2 28 28 H 0.97005 * 119.99950 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.81265 * 359.88539 * 14 13 11 30 30 H 1.08000 * 119.94003 * 180.02562 * 15 14 13 31 31 H 1.08008 * 120.21296 * 180.18230 * 18 17 16 32 32 H 0.96997 * 120.22224 * 184.90862 * 21 19 17 33 33 H 1.09002 * 109.21893 * 45.32599 * 22 21 19 34 34 H 1.09003 * 109.21228 * 164.70225 * 22 21 19 35 35 H 1.08988 * 109.04704 * 165.70699 * 23 22 21 36 36 H 1.08996 * 109.04274 * 284.58995 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5583 -5.1055 0.0020 13 6 2.7131 -6.0056 0.0005 14 6 4.0892 -5.7496 -0.0011 15 6 4.9909 -6.7903 0.0012 16 6 4.5397 -8.1023 0.0046 17 6 3.1587 -8.3694 0.0009 18 6 2.2482 -7.3198 0.0009 19 6 2.7024 -9.7729 -0.0039 20 8 1.8450 -10.1423 -0.7830 21 7 3.2556 -10.6421 0.8757 22 6 4.2064 -10.1513 1.8749 23 6 5.5560 -9.8545 1.2351 24 8 5.4136 -9.1380 0.0162 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 3.1567 -3.4354 0.0002 29 1 4.4457 -4.7301 -0.0038 30 1 6.0512 -6.5849 0.0003 31 1 1.1870 -7.5209 0.0010 32 1 3.0235 -11.5834 0.8435 33 1 3.8147 -9.2394 2.3255 34 1 4.3352 -10.9075 2.6494 35 1 6.1550 -9.2623 1.9267 36 1 6.0701 -10.7949 1.0367 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:03 Heat of formation + Delta-G solvation = -78.962494 kcal Electronic energy + Delta-G solvation = -22218.953524 eV Core-core repulsion = 18668.425966 eV Total energy + Delta-G solvation = -3550.527558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.31889 -39.30852 -38.69629 -37.23821 -35.24383 -34.35074 -32.52672 -31.40526 -31.07423 -29.33508 -27.24266 -25.08011 -24.03171 -22.95375 -22.03371 -21.09523 -19.81352 -18.25348 -18.00469 -17.35988 -16.82692 -16.48563 -16.04845 -15.70164 -15.25771 -14.73107 -14.51916 -14.49758 -14.27753 -14.08211 -13.76321 -13.42900 -13.09362 -12.70808 -12.41189 -12.21713 -11.98654 -11.78548 -11.51453 -11.02125 -10.92145 -10.81211 -10.35911 -10.19688 -9.47582 -9.44944 -9.30462 -9.27743 -8.87004 -8.77274 -7.96006 -6.19888 -4.27460 0.45268 0.93480 2.35193 2.69592 2.99607 3.22469 3.28519 3.30461 3.30679 3.88129 3.94873 4.12644 4.28501 4.32153 4.34712 4.58526 4.82314 4.87938 4.97663 5.08472 5.16436 5.16572 5.23581 5.25890 5.67006 5.92095 5.97519 6.15448 6.33971 6.46568 6.72402 7.06891 7.24910 7.31451 7.46479 7.60233 7.86460 7.92054 8.50872 8.70844 8.96649 9.38982 10.90292 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.031633 B = 0.003244 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.928063 B = 8628.344967 C = 9257.711961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.702 5.702 11 C 0.539 3.461 12 O -0.546 6.546 13 C -0.129 4.129 14 C -0.050 4.050 15 C -0.140 4.140 16 C 0.140 3.860 17 C -0.175 4.175 18 C 0.001 3.999 19 C 0.577 3.423 20 O -0.520 6.520 21 N -0.725 5.725 22 C 0.071 3.929 23 C 0.046 3.954 24 O -0.323 6.323 25 H 0.267 0.733 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.390 0.610 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.407 0.593 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.777 -19.288 5.630 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.351 5.351 11 C 0.324 3.676 12 O -0.426 6.426 13 C -0.133 4.133 14 C -0.069 4.069 15 C -0.158 4.158 16 C 0.096 3.904 17 C -0.178 4.178 18 C -0.018 4.018 19 C 0.364 3.636 20 O -0.395 6.395 21 N -0.380 5.380 22 C -0.055 4.055 23 C -0.030 4.030 24 O -0.240 6.240 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.224 0.776 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.244 0.756 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.426 -19.328 5.084 24.076 hybrid contribution 0.851 0.655 0.195 1.092 sum 14.277 -18.672 5.279 24.091 Atomic orbital electron populations 1.69971 1.06123 1.27409 1.48632 1.24950 0.94921 0.99481 0.94614 0.86399 0.79588 0.82572 0.78261 1.20422 1.20991 1.19723 1.21197 0.93255 0.90355 1.53570 0.91843 1.19189 0.88250 0.81683 0.98082 1.46431 1.11297 1.05876 1.71448 1.18063 0.87887 0.83203 0.78462 1.90770 1.16012 1.84793 1.51027 1.20318 0.93932 0.94360 1.04643 1.21491 0.91749 0.99831 0.93820 1.21031 1.00966 0.90318 1.03525 1.18906 0.86870 0.87548 0.97114 1.20172 0.93627 0.93873 1.10173 1.21141 1.00424 0.89659 0.90623 1.18322 0.80256 0.85385 0.79626 1.90861 1.30668 1.79038 1.38964 1.45855 1.46073 1.11585 1.34462 1.22042 0.89503 1.02418 0.91532 1.23188 0.96958 0.97022 0.85798 1.85844 1.60675 1.43391 1.34070 0.92364 0.95172 0.95172 0.77598 0.84040 0.83990 0.83365 0.75642 0.89930 0.87722 0.90952 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 16 8 H 0.06 1.55 7.60 -52.48 -0.40 1.16 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.70 -14.50 5.50 -62.50 -0.34 -14.85 16 11 C 0.54 10.94 7.76 -12.43 -0.10 10.84 16 12 O -0.55 -13.33 16.33 5.29 0.09 -13.24 16 13 C -0.13 -2.02 5.87 -104.98 -0.62 -2.64 16 14 C -0.05 -0.60 9.52 -39.13 -0.37 -0.97 16 15 C -0.14 -1.45 9.98 -39.59 -0.40 -1.85 16 16 C 0.14 1.61 5.55 -38.49 -0.21 1.40 16 17 C -0.17 -2.36 4.82 -104.91 -0.51 -2.86 16 18 C 0.00 0.02 9.31 -38.88 -0.36 -0.34 16 19 C 0.58 7.82 7.25 -12.13 -0.09 7.73 16 20 O -0.52 -9.06 17.92 5.29 0.09 -8.97 16 21 N -0.73 -6.34 5.44 -61.59 -0.33 -6.67 16 22 C 0.07 0.39 6.28 -4.46 -0.03 0.36 16 23 C 0.05 0.26 6.97 36.79 0.26 0.52 16 24 O -0.32 -3.26 9.89 -18.27 -0.18 -3.44 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.39 6.69 6.33 -40.82 -0.26 6.43 16 29 H 0.14 1.43 6.37 -52.49 -0.33 1.10 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.15 2.48 7.64 -52.48 -0.40 2.08 16 32 H 0.41 2.78 8.95 -40.82 -0.37 2.42 16 33 H 0.08 0.53 7.45 -51.93 -0.39 0.15 16 34 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.28 8.14 -51.94 -0.42 -0.14 16 36 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -35.53 314.10 -6.91 -42.44 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.82 Total: 4.05 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.87 Total: 5.50 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.06 Total: -46.52 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: 0.00 Total: -25.64 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.53 -6.91 -42.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.522 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds