Wall clock time and date at job start Tue Mar 31 2020 08:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47066 * 269.99771 * 3 2 1 5 5 H 1.48497 * 109.46938 * 29.99504 * 3 2 1 6 6 H 1.48496 * 109.47379 * 149.99633 * 3 2 1 7 7 C 1.37875 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00272 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00318 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99481 * 359.97438 * 11 10 9 13 13 C 1.47633 * 120.00370 * 179.97438 * 11 10 9 14 14 C 1.39969 * 119.98933 * 359.97438 * 13 11 10 15 15 C 1.37704 * 120.36633 * 179.86254 * 14 13 11 16 16 C 1.38738 * 120.11506 * 0.02562 * 15 14 13 17 17 C 1.40653 * 119.92780 * 0.22665 * 16 15 14 18 18 C 1.38949 * 119.99479 * 359.66173 * 17 16 15 19 19 C 1.47586 * 118.96145 * 179.62063 * 17 16 15 20 20 O 1.21591 * 120.60012 * 227.87450 * 19 17 16 21 21 N 1.35475 * 118.80101 * 47.89627 * 19 17 16 22 22 C 1.46401 * 119.55595 * 4.88601 * 21 19 17 23 23 C 1.52277 * 110.74329 * 285.01086 * 22 21 19 24 24 O 1.35525 * 120.86539 * 180.46016 * 16 15 14 25 25 H 0.96997 * 120.00265 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47362 * 59.99321 * 9 7 2 27 27 H 1.08999 * 109.46787 * 299.99407 * 9 7 2 28 28 H 0.97005 * 119.99950 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.81265 * 359.88539 * 14 13 11 30 30 H 1.08000 * 119.94003 * 180.02562 * 15 14 13 31 31 H 1.08008 * 120.21296 * 180.18230 * 18 17 16 32 32 H 0.96997 * 120.22224 * 184.90862 * 21 19 17 33 33 H 1.09002 * 109.21893 * 45.32599 * 22 21 19 34 34 H 1.09003 * 109.21228 * 164.70225 * 22 21 19 35 35 H 1.08988 * 109.04704 * 165.70699 * 23 22 21 36 36 H 1.08996 * 109.04274 * 284.58995 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5583 -5.1055 0.0020 13 6 2.7131 -6.0056 0.0005 14 6 4.0892 -5.7496 -0.0011 15 6 4.9909 -6.7903 0.0012 16 6 4.5397 -8.1023 0.0046 17 6 3.1587 -8.3694 0.0009 18 6 2.2482 -7.3198 0.0009 19 6 2.7024 -9.7729 -0.0039 20 8 1.8450 -10.1423 -0.7830 21 7 3.2556 -10.6421 0.8757 22 6 4.2064 -10.1513 1.8749 23 6 5.5560 -9.8545 1.2351 24 8 5.4136 -9.1380 0.0162 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 3.1567 -3.4354 0.0002 29 1 4.4457 -4.7301 -0.0038 30 1 6.0512 -6.5849 0.0003 31 1 1.1870 -7.5209 0.0010 32 1 3.0235 -11.5834 0.8435 33 1 3.8147 -9.2394 2.3255 34 1 4.3352 -10.9075 2.6494 35 1 6.1550 -9.2623 1.9267 36 1 6.0701 -10.7949 1.0367 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:03 Heat of formation + Delta-G solvation = -108.129351 kcal Electronic energy + Delta-G solvation = -22220.218294 eV Core-core repulsion = 18668.425966 eV Total energy + Delta-G solvation = -3551.792328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.23455 -40.79269 -39.67768 -38.37591 -36.26820 -36.07734 -34.46242 -32.50120 -32.07993 -30.21443 -29.06996 -25.97625 -25.52793 -24.05424 -23.41140 -22.13210 -21.25474 -19.47479 -19.02199 -18.27861 -18.06321 -17.72921 -17.15322 -16.96253 -16.65096 -16.22857 -16.16976 -15.67762 -15.33776 -15.07990 -14.82889 -14.64285 -14.19436 -14.08095 -13.98619 -13.67132 -13.07720 -13.01598 -12.91388 -12.70083 -12.38209 -12.21154 -11.59990 -11.48913 -11.19045 -11.00692 -10.80804 -10.33178 -10.19956 -10.06752 -9.73093 -8.28093 -6.45215 -0.57583 -0.12130 1.31324 1.45692 1.48292 1.59357 1.67458 2.05559 2.28320 2.38814 2.49481 2.67095 3.07423 3.27069 3.62267 3.72625 3.82984 3.93820 3.95549 4.15576 4.21393 4.50660 4.63592 4.69036 4.79871 4.85651 4.99627 5.07858 5.15093 5.21946 5.34387 5.43746 5.65190 5.74910 5.82916 5.87673 6.30568 6.63837 6.79335 6.96626 7.21412 7.37064 8.84314 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.031633 B = 0.003244 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.928063 B = 8628.344967 C = 9257.711961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.251 1.251 7 C -0.555 4.555 8 H 0.090 0.910 9 C 0.264 3.736 10 N -0.694 5.694 11 C 0.538 3.462 12 O -0.600 6.600 13 C -0.151 4.151 14 C -0.032 4.032 15 C -0.124 4.124 16 C 0.163 3.837 17 C -0.187 4.187 18 C -0.011 4.011 19 C 0.568 3.432 20 O -0.575 6.575 21 N -0.708 5.708 22 C 0.062 3.938 23 C 0.038 3.962 24 O -0.335 6.335 25 H 0.269 0.731 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.410 0.590 29 H 0.166 0.834 30 H 0.185 0.815 31 H 0.117 0.883 32 H 0.417 0.583 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.837 -19.696 6.743 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.593 4.593 8 H 0.107 0.893 9 C 0.142 3.858 10 N -0.343 5.343 11 C 0.327 3.673 12 O -0.483 6.483 13 C -0.154 4.154 14 C -0.051 4.051 15 C -0.142 4.142 16 C 0.118 3.882 17 C -0.191 4.191 18 C -0.031 4.031 19 C 0.356 3.644 20 O -0.455 6.455 21 N -0.361 5.361 22 C -0.061 4.061 23 C -0.036 4.036 24 O -0.252 6.252 25 H 0.077 0.923 26 H 0.007 0.993 27 H 0.010 0.990 28 H 0.248 0.752 29 H 0.184 0.816 30 H 0.203 0.797 31 H 0.135 0.865 32 H 0.255 0.745 33 H 0.093 0.907 34 H 0.167 0.833 35 H 0.120 0.880 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.585 -19.787 6.245 27.856 hybrid contribution -0.640 0.570 -0.082 0.861 sum 17.945 -19.217 6.163 27.006 Atomic orbital electron populations 1.70147 1.08400 1.28617 1.49918 1.26095 0.95756 1.04019 0.93808 0.85124 0.78595 0.76751 0.78552 1.19738 1.21203 1.17439 1.21610 0.94501 0.90194 1.52980 0.89251 1.18644 0.88693 0.84081 0.94430 1.46069 1.11515 1.04946 1.71801 1.18783 0.88066 0.83978 0.76505 1.90732 1.18798 1.85594 1.53218 1.19819 0.94624 0.92136 1.08858 1.21699 0.89798 1.01730 0.91887 1.21384 1.02536 0.88873 1.01426 1.19024 0.86011 0.88760 0.94423 1.20189 0.94575 0.93276 1.11070 1.20904 0.99551 0.90569 0.92086 1.18531 0.80008 0.86035 0.79855 1.90826 1.33196 1.79921 1.41578 1.45831 1.45410 1.11539 1.33340 1.22414 0.88624 1.03604 0.91489 1.23592 0.97189 0.98159 0.84676 1.85819 1.59721 1.43109 1.36539 0.92259 0.99325 0.99020 0.75190 0.81634 0.79748 0.86453 0.74458 0.90750 0.83307 0.88001 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.99 41.45 29.54 68.60 2.03 43.48 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.56 -29.58 9.28 25.60 0.24 -29.34 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.26 14.49 5.43 85.63 0.46 14.96 16 10 N -0.69 -29.43 5.50 -469.90 -2.58 -32.01 16 11 C 0.54 23.08 7.76 86.72 0.67 23.75 16 12 O -0.60 -31.91 16.33 -3.99 -0.07 -31.97 16 13 C -0.15 -4.81 5.87 -20.10 -0.12 -4.93 16 14 C -0.03 -0.69 9.52 22.56 0.21 -0.48 16 15 C -0.12 -2.04 9.98 22.26 0.22 -1.82 16 16 C 0.16 3.27 5.55 22.98 0.13 3.39 16 17 C -0.19 -5.01 4.82 -20.05 -0.10 -5.11 16 18 C -0.01 -0.36 9.31 22.72 0.21 -0.15 16 19 C 0.57 15.56 7.25 86.60 0.63 16.19 16 20 O -0.58 -21.19 17.92 -4.00 -0.07 -21.26 16 21 N -0.71 -11.16 5.44 -466.65 -2.54 -13.70 16 22 C 0.06 0.46 6.28 86.16 0.54 1.00 16 23 C 0.04 0.24 6.97 71.74 0.50 0.74 16 24 O -0.34 -5.36 9.89 -88.28 -0.87 -6.23 16 25 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 26 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.41 13.63 6.33 -92.70 -0.59 13.05 16 29 H 0.17 2.71 6.37 -2.91 -0.02 2.69 16 30 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 31 H 0.12 4.45 7.64 -2.91 -0.02 4.43 16 32 H 0.42 4.98 8.95 -92.71 -0.83 4.15 16 33 H 0.07 0.74 7.45 -2.39 -0.02 0.72 16 34 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -85.20 314.10 -0.02 -85.22 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -0.27 Total: 13.47 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 4.07 Total: 18.83 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.83 Total: -101.52 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: -1.01 Total: -59.46 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -85.20 -0.02 -85.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.913 kcal (2) G-P(sol) polarization free energy of solvation -85.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds