Wall clock time and date at job start Tue Mar 31 2020 07:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47326 * 2 1 4 4 C 1.50698 * 109.47600 * 239.99954 * 2 1 3 5 5 H 1.08005 * 119.99935 * 240.00684 * 4 2 1 6 6 C 1.37873 * 120.00209 * 59.99696 * 4 2 1 7 7 N 1.31516 * 119.99963 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47426 * 60.00014 * 8 6 4 10 10 H 1.48500 * 109.47170 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47156 * 299.99991 * 8 6 4 12 12 N 1.46506 * 109.46962 * 119.99410 * 2 1 3 13 13 C 1.34777 * 120.00403 * 275.00017 * 12 2 1 14 14 O 1.21622 * 119.99551 * 0.02562 * 13 12 2 15 15 C 1.47252 * 119.99890 * 179.97438 * 13 12 2 16 16 C 1.36772 * 126.94811 * 359.97438 * 15 13 12 17 17 N 1.34657 * 108.40053 * 180.02562 * 16 15 13 18 18 C 1.46496 * 124.85080 * 180.02562 * 17 16 15 19 19 C 1.36448 * 110.29989 * 359.97438 * 17 16 15 20 20 C 1.34495 * 108.85264 * 0.02562 * 19 17 16 21 21 C 1.50700 * 126.82802 * 179.97438 * 20 19 17 22 22 F 1.39897 * 109.47348 * 0.02562 * 21 20 19 23 23 F 1.39902 * 109.46791 * 120.02715 * 21 20 19 24 24 F 1.39907 * 109.46936 * 240.02400 * 21 20 19 25 25 H 1.08999 * 109.47387 * 300.00468 * 1 2 3 26 26 H 1.09000 * 109.47117 * 60.00484 * 1 2 3 27 27 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00302 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99070 * 95.00097 * 12 2 1 30 30 H 1.08005 * 125.79533 * 359.97438 * 16 15 13 31 31 H 1.09004 * 109.47180 * 270.02334 * 18 17 16 32 32 H 1.08999 * 109.47409 * 30.02041 * 18 17 16 33 33 H 1.09003 * 109.47301 * 150.02416 * 18 17 16 34 34 H 1.07998 * 125.57526 * 180.26595 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 1.8262 -2.5203 -4.0076 10 1 1.8272 -0.4200 -5.2203 11 1 3.8066 -1.1209 -4.0079 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8573 1.1618 2.4118 15 6 2.6373 -0.7124 3.5597 16 6 3.0001 -2.0274 3.6593 17 7 3.3897 -2.2660 4.9260 18 6 3.8528 -3.5615 5.4294 19 6 3.2926 -1.1286 5.6734 20 6 2.8350 -0.1335 4.8929 21 6 2.5766 1.2926 5.3061 22 9 2.8884 1.4494 6.6608 23 9 3.3737 2.1513 4.5416 24 9 1.2276 1.6008 5.0993 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7090 1.1612 -3.4844 29 1 2.2489 -1.6317 1.1527 30 1 2.9771 -2.7514 2.8582 31 1 3.0022 -4.1309 5.8041 32 1 4.3328 -4.1146 4.6220 33 1 4.5679 -3.4031 6.2366 34 1 3.5458 -1.0407 6.7196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116529004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:05 Heat of formation + Delta-G solvation = -139.433392 kcal Electronic energy + Delta-G solvation = -23459.414635 eV Core-core repulsion = 19364.408121 eV Total energy + Delta-G solvation = -4095.006514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.61639 -47.22262 -46.98615 -41.45355 -38.35873 -34.69696 -33.25788 -32.35647 -30.23876 -28.60799 -27.42228 -25.22109 -24.97628 -22.53367 -20.73978 -20.22682 -19.22049 -18.37694 -17.93096 -17.75728 -16.64953 -15.99202 -15.67604 -15.29335 -15.06067 -14.34026 -14.07186 -14.00706 -13.88975 -13.75208 -13.50126 -13.21543 -13.20733 -13.04504 -12.81301 -12.64539 -12.47221 -12.26953 -11.64211 -11.60361 -11.05410 -10.92411 -10.66974 -10.28763 -10.18187 -9.05899 -9.00411 -8.98090 -8.53953 -8.49512 -7.79452 -6.07491 -4.16883 1.81690 1.92288 2.44519 3.21549 3.27467 3.32933 3.33827 4.11954 4.14424 4.19816 4.36818 4.43222 4.56899 4.65399 4.76334 4.88075 4.94424 5.02586 5.24460 5.48387 5.55765 5.92746 6.33673 6.66465 6.89057 6.92317 7.06089 7.22975 7.54960 7.63407 7.76045 7.99160 8.21235 8.74242 8.84756 9.22981 9.50742 10.98482 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.004592 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.966721 B = 6096.000501 C = 7019.264336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.704 5.704 13 C 0.566 3.434 14 O -0.541 6.541 15 C -0.166 4.166 16 C 0.042 3.958 17 N -0.441 5.441 18 C 0.068 3.932 19 C 0.048 3.952 20 C -0.224 4.224 21 C 0.544 3.456 22 F -0.193 7.193 23 F -0.169 7.169 24 F -0.169 7.169 25 H 0.016 0.984 26 H 0.089 0.911 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.384 0.616 30 H 0.181 0.819 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 -9.789 17.579 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.352 5.352 13 C 0.351 3.649 14 O -0.419 6.419 15 C -0.175 4.175 16 C -0.091 4.091 17 N -0.116 5.116 18 C -0.073 4.073 19 C -0.083 4.083 20 C -0.233 4.233 21 C 0.490 3.510 22 F -0.174 7.174 23 F -0.150 7.150 24 F -0.150 7.150 25 H 0.035 0.965 26 H 0.108 0.892 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.216 0.784 30 H 0.198 0.802 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.592 -9.094 17.548 20.540 hybrid contribution 0.393 -0.819 -0.790 1.204 sum 5.985 -9.914 16.758 20.370 Atomic orbital electron populations 1.22071 0.98452 0.99022 1.00979 1.18737 0.91011 0.94080 0.79710 0.93193 1.21165 1.32462 1.13184 0.90364 0.92234 1.24881 0.94857 0.94964 0.98990 1.69898 1.35778 1.22374 1.23930 0.86516 0.79122 0.79522 0.81940 1.20243 1.21147 1.20234 1.46341 1.65407 1.13177 1.10271 1.17315 0.78726 0.86589 0.82316 1.90787 1.51016 1.15261 1.84849 1.20618 1.09938 0.93161 0.93811 1.22039 1.02908 0.96976 0.87154 1.43545 1.49763 1.09449 1.08818 1.22200 1.01083 0.82371 1.01635 1.21419 1.04705 0.84532 0.97598 1.20420 1.14397 0.92789 0.95675 1.17225 0.74747 0.85802 0.73273 1.93114 1.93067 1.96523 1.34732 1.93227 1.73745 1.72480 1.75527 1.93224 1.33273 1.94027 1.94501 0.96472 0.89211 0.95587 0.92535 0.78357 0.80160 0.90258 0.89097 0.89359 0.80356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.15 0.34 -3.40 16 2 C 0.27 6.93 2.56 -69.08 -0.18 6.76 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.70 -15.12 5.06 -56.07 -0.28 -15.41 16 13 C 0.57 12.27 7.77 -12.60 -0.10 12.18 16 14 O -0.54 -13.93 14.49 5.26 0.08 -13.85 16 15 C -0.17 -2.81 6.29 -103.35 -0.65 -3.46 16 16 C 0.04 0.50 10.83 -16.84 -0.18 0.32 16 17 N -0.44 -4.19 3.09 -124.52 -0.38 -4.57 16 18 C 0.07 0.30 11.03 59.84 0.66 0.96 16 19 C 0.05 0.53 10.79 -16.82 -0.18 0.35 16 20 C -0.22 -3.50 5.77 -102.53 -0.59 -4.09 16 21 C 0.54 9.32 2.88 36.01 0.10 9.42 16 22 F -0.19 -2.75 16.80 2.25 0.04 -2.72 16 23 F -0.17 -3.27 16.55 2.25 0.04 -3.24 16 24 F -0.17 -3.26 16.55 2.25 0.04 -3.22 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.38 6.89 7.48 -40.82 -0.31 6.58 16 30 H 0.18 1.65 7.45 -52.48 -0.39 1.26 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.28 8.13 -51.93 -0.42 -0.14 16 33 H 0.09 0.23 8.13 -51.93 -0.42 -0.19 16 34 H 0.18 1.34 7.96 -52.49 -0.42 0.93 16 LS Contribution 309.20 15.07 4.66 4.66 Total: -1.00 -34.34 309.20 -4.86 -39.20 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.48 Total: 1.83 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.17 Total: 6.23 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.04 Total: -44.52 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 0.11 Total: -9.18 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.34 -4.86 -39.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116529004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.238 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds