Wall clock time and date at job start Tue Mar 31 2020 07:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47326 * 2 1 4 4 C 1.50698 * 109.47600 * 239.99954 * 2 1 3 5 5 H 1.08005 * 119.99935 * 240.00684 * 4 2 1 6 6 C 1.37873 * 120.00209 * 59.99696 * 4 2 1 7 7 N 1.31516 * 119.99963 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47426 * 60.00014 * 8 6 4 10 10 H 1.48500 * 109.47170 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47156 * 299.99991 * 8 6 4 12 12 N 1.46506 * 109.46962 * 119.99410 * 2 1 3 13 13 C 1.34777 * 120.00403 * 275.00017 * 12 2 1 14 14 O 1.21622 * 119.99551 * 0.02562 * 13 12 2 15 15 C 1.47252 * 119.99890 * 179.97438 * 13 12 2 16 16 C 1.36772 * 126.94811 * 359.97438 * 15 13 12 17 17 N 1.34657 * 108.40053 * 180.02562 * 16 15 13 18 18 C 1.46496 * 124.85080 * 180.02562 * 17 16 15 19 19 C 1.36448 * 110.29989 * 359.97438 * 17 16 15 20 20 C 1.34495 * 108.85264 * 0.02562 * 19 17 16 21 21 C 1.50700 * 126.82802 * 179.97438 * 20 19 17 22 22 F 1.39897 * 109.47348 * 0.02562 * 21 20 19 23 23 F 1.39902 * 109.46791 * 120.02715 * 21 20 19 24 24 F 1.39907 * 109.46936 * 240.02400 * 21 20 19 25 25 H 1.08999 * 109.47387 * 300.00468 * 1 2 3 26 26 H 1.09000 * 109.47117 * 60.00484 * 1 2 3 27 27 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00302 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99070 * 95.00097 * 12 2 1 30 30 H 1.08005 * 125.79533 * 359.97438 * 16 15 13 31 31 H 1.09004 * 109.47180 * 270.02334 * 18 17 16 32 32 H 1.08999 * 109.47409 * 30.02041 * 18 17 16 33 33 H 1.09003 * 109.47301 * 150.02416 * 18 17 16 34 34 H 1.07998 * 125.57526 * 180.26595 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 1.8262 -2.5203 -4.0076 10 1 1.8272 -0.4200 -5.2203 11 1 3.8066 -1.1209 -4.0079 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8573 1.1618 2.4118 15 6 2.6373 -0.7124 3.5597 16 6 3.0001 -2.0274 3.6593 17 7 3.3897 -2.2660 4.9260 18 6 3.8528 -3.5615 5.4294 19 6 3.2926 -1.1286 5.6734 20 6 2.8350 -0.1335 4.8929 21 6 2.5766 1.2926 5.3061 22 9 2.8884 1.4494 6.6608 23 9 3.3737 2.1513 4.5416 24 9 1.2276 1.6008 5.0993 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7090 1.1612 -3.4844 29 1 2.2489 -1.6317 1.1527 30 1 2.9771 -2.7514 2.8582 31 1 3.0022 -4.1309 5.8041 32 1 4.3328 -4.1146 4.6220 33 1 4.5679 -3.4031 6.2366 34 1 3.5458 -1.0407 6.7196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116529004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:04 Heat of formation + Delta-G solvation = -163.163544 kcal Electronic energy + Delta-G solvation = -23460.443652 eV Core-core repulsion = 19364.408121 eV Total energy + Delta-G solvation = -4096.035530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.94709 -48.51483 -48.42036 -42.40587 -40.05710 -36.63969 -34.35954 -34.06613 -31.68080 -30.11740 -28.31967 -27.31652 -26.13411 -23.95178 -22.28570 -21.36761 -20.83393 -19.68045 -19.29989 -19.04028 -18.23672 -17.41637 -17.02886 -16.49851 -16.43425 -15.83063 -15.48221 -15.39500 -15.30257 -14.99187 -14.88383 -14.63980 -14.63131 -14.49299 -14.24477 -13.70360 -13.57974 -13.34588 -13.15179 -12.94918 -12.81650 -12.80664 -12.68422 -12.23898 -12.13131 -11.09072 -10.81951 -10.55351 -9.96497 -9.78194 -9.44061 -8.13915 -6.32141 0.65719 0.96152 1.46931 1.50035 1.57691 1.61008 2.04530 2.38722 2.57315 2.70989 3.08258 3.16453 3.21392 3.60426 3.86754 3.96674 4.03512 4.35671 4.54172 4.58593 4.75316 4.84997 4.86233 4.96176 5.12474 5.23291 5.47584 5.64513 5.71831 5.75121 5.95652 6.11886 6.13922 6.75448 7.04864 7.35680 7.63596 8.92669 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.004592 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.966721 B = 6096.000501 C = 7019.264336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.273 3.727 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.977 3.023 9 H -0.260 1.260 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.698 5.698 13 C 0.560 3.440 14 O -0.597 6.597 15 C -0.223 4.223 16 C 0.078 3.922 17 N -0.427 5.427 18 C 0.058 3.942 19 C 0.081 3.919 20 C -0.265 4.265 21 C 0.538 3.462 22 F -0.176 7.176 23 F -0.191 7.191 24 F -0.190 7.190 25 H 0.006 0.994 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.214 0.786 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 -13.941 18.826 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.801 3.199 9 H -0.185 1.185 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.347 5.347 13 C 0.349 3.651 14 O -0.479 6.479 15 C -0.232 4.232 16 C -0.057 4.057 17 N -0.100 5.100 18 C -0.080 4.080 19 C -0.051 4.051 20 C -0.273 4.273 21 C 0.483 3.517 22 F -0.158 7.158 23 F -0.172 7.172 24 F -0.172 7.172 25 H 0.025 0.975 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.239 0.761 30 H 0.230 0.770 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.309 -13.322 18.844 24.207 hybrid contribution -0.094 0.435 -1.034 1.125 sum 7.216 -12.887 17.810 23.137 Atomic orbital electron populations 1.21885 0.98441 0.99470 0.99279 1.18320 0.91013 0.91844 0.81903 0.98876 1.21504 1.32605 1.13620 0.90531 0.90421 1.25864 0.94871 0.95587 1.02502 1.70074 1.37089 1.24066 1.24624 0.85334 0.78577 0.78737 0.77272 1.18489 1.21445 1.19561 1.46000 1.65591 1.13921 1.09196 1.18041 0.77458 0.86147 0.83467 1.90741 1.53445 1.17905 1.85856 1.20205 1.14875 0.95545 0.92550 1.22358 0.99262 0.95231 0.88837 1.43951 1.47531 1.10843 1.07629 1.22690 1.02542 0.79688 1.03122 1.21937 1.01061 0.83481 0.98589 1.20441 1.17900 0.92621 0.96315 1.17549 0.73610 0.86780 0.73728 1.93127 1.92823 1.96559 1.33257 1.93172 1.74215 1.73508 1.76341 1.93171 1.34947 1.94336 1.94728 0.97473 0.91538 0.93810 0.92620 0.76073 0.76984 0.88420 0.87216 0.86869 0.76367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.03 9.26 71.98 0.67 -6.36 16 2 C 0.27 14.79 2.56 44.24 0.11 14.90 16 3 H -0.01 -0.43 7.58 -2.39 -0.02 -0.45 16 4 C -0.54 -29.12 8.73 25.60 0.22 -28.90 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -54.11 11.32 21.45 0.24 -53.87 16 8 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.70 -30.53 5.06 -449.54 -2.27 -32.81 16 13 C 0.56 25.29 7.77 86.61 0.67 25.97 16 14 O -0.60 -33.07 14.49 -4.10 -0.06 -33.13 16 15 C -0.22 -7.43 6.29 -19.04 -0.12 -7.55 16 16 C 0.08 1.62 10.83 83.92 0.91 2.53 16 17 N -0.43 -6.03 3.09 -547.88 -1.69 -7.72 16 18 C 0.06 0.14 11.03 127.77 1.41 1.55 16 19 C 0.08 1.49 10.79 83.12 0.90 2.39 16 20 C -0.26 -8.05 5.77 -18.51 -0.11 -8.16 16 21 C 0.54 18.95 2.88 71.24 0.21 19.16 16 22 F -0.18 -4.94 16.80 44.97 0.76 -4.18 16 23 F -0.19 -7.87 16.55 44.97 0.74 -7.13 16 24 F -0.19 -7.79 16.55 44.97 0.74 -7.04 16 25 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 27 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.40 14.02 7.48 -92.71 -0.69 13.33 16 30 H 0.21 2.88 7.45 -2.91 -0.02 2.85 16 31 H 0.10 0.02 8.14 -2.38 -0.02 0.00 16 32 H 0.11 -0.03 8.13 -2.39 -0.02 -0.05 16 33 H 0.11 -0.17 8.13 -2.39 -0.02 -0.19 16 34 H 0.22 2.13 7.96 -2.91 -0.02 2.10 16 Total: -1.00 -82.05 309.20 6.27 -75.78 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.46 Total: 9.46 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 5.32 Total: 16.60 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -3.72 Total: -94.40 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.06 Total: -33.13 kcal Atomic # 9 Polarization: -20.60 SS G_CDS: 2.24 Total: -18.35 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -82.05 6.27 -75.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116529004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.386 kcal (2) G-P(sol) polarization free energy of solvation -82.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds