Wall clock time and date at job start Tue Mar 31 2020 07:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.50704 * 109.47423 * 120.00235 * 2 1 3 5 5 H 1.07995 * 119.99866 * 120.00165 * 4 2 1 6 6 C 1.37875 * 119.99642 * 299.99884 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99682 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46870 * 60.00526 * 8 6 4 10 10 H 1.48504 * 109.46849 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47321 * 299.99966 * 8 6 4 12 12 N 1.46499 * 109.47347 * 240.00532 * 2 1 3 13 13 C 1.34770 * 120.00106 * 84.99486 * 12 2 1 14 14 O 1.21626 * 120.00290 * 0.02562 * 13 12 2 15 15 C 1.47265 * 119.99819 * 180.02562 * 13 12 2 16 16 C 1.36768 * 126.94308 * 0.02562 * 15 13 12 17 17 N 1.34657 * 108.39686 * 179.69666 * 16 15 13 18 18 C 1.46504 * 124.85076 * 180.26087 * 17 16 15 19 19 C 1.36445 * 110.29784 * 0.26847 * 17 16 15 20 20 C 1.34482 * 108.85796 * 359.97438 * 19 17 16 21 21 C 1.50703 * 126.83568 * 179.97438 * 20 19 17 22 22 F 1.39910 * 109.46932 * 0.02562 * 21 20 19 23 23 F 1.39903 * 109.47154 * 120.01928 * 21 20 19 24 24 F 1.39899 * 109.47278 * 240.02705 * 21 20 19 25 25 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47145 * 299.99561 * 1 2 3 27 27 H 1.09001 * 109.47645 * 59.99576 * 1 2 3 28 28 H 0.96998 * 120.00324 * 179.97438 * 7 6 4 29 29 H 0.96998 * 119.99714 * 265.00238 * 12 2 1 30 30 H 1.08002 * 125.80383 * 359.96972 * 16 15 13 31 31 H 1.08999 * 109.46825 * 90.01032 * 18 17 16 32 32 H 1.08998 * 109.47122 * 210.00471 * 18 17 16 33 33 H 1.08997 * 109.47398 * 330.01010 * 18 17 16 34 34 H 1.08005 * 125.57192 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6035 8 14 2.3215 -1.1205 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8259 -2.5203 4.0077 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8580 1.1621 -2.4116 15 6 2.6374 -0.7124 -3.5596 16 6 3.0003 -2.0273 -3.6591 17 7 3.3841 -2.2674 -4.9273 18 6 3.8399 -3.5649 -5.4326 19 6 3.2881 -1.1297 -5.6744 20 6 2.8371 -0.1330 -4.8924 21 6 2.5831 1.2943 -5.3043 22 9 2.8901 1.4499 -6.6604 23 9 1.2364 1.6082 -5.0921 24 9 3.3870 2.1495 -4.5430 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.7090 1.1614 3.4845 29 1 2.2490 -1.6316 -1.1527 30 1 2.9782 -2.7512 -2.8579 31 1 2.9855 -4.1303 -5.8047 32 1 4.5530 -3.4094 -6.2421 33 1 4.3201 -4.1203 -4.6270 34 1 3.5341 -1.0437 -6.7225 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116529005.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:19 Heat of formation + Delta-G solvation = -139.414003 kcal Electronic energy + Delta-G solvation = -23459.311761 eV Core-core repulsion = 19364.306089 eV Total energy + Delta-G solvation = -4095.005673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.61557 -47.22124 -46.98702 -41.45423 -38.35879 -34.69694 -33.25767 -32.35633 -30.23884 -28.60825 -27.42235 -25.22126 -24.97609 -22.53365 -20.73965 -20.22658 -19.22077 -18.37705 -17.93072 -17.75700 -16.64953 -15.99202 -15.67595 -15.29333 -15.06073 -14.33981 -14.07160 -14.00667 -13.89020 -13.75203 -13.50127 -13.21508 -13.20766 -13.04542 -12.81299 -12.64585 -12.47199 -12.26950 -11.64229 -11.60386 -11.05347 -10.92479 -10.66939 -10.28751 -10.18304 -9.05886 -9.00451 -8.98093 -8.53968 -8.49486 -7.79495 -6.07475 -4.16894 1.81726 1.92329 2.44502 3.21533 3.27491 3.32914 3.33833 4.11835 4.14496 4.19811 4.36810 4.43217 4.56891 4.65392 4.76343 4.88060 4.94469 5.02603 5.24449 5.48383 5.55787 5.92725 6.33677 6.66476 6.89019 6.92239 7.06090 7.22939 7.54920 7.63424 7.75997 7.99106 8.21181 8.74223 8.84751 9.22968 9.50739 10.98478 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020704 B = 0.004592 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.088435 B = 6096.457087 C = 7018.540635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.704 5.704 13 C 0.566 3.434 14 O -0.541 6.541 15 C -0.166 4.166 16 C 0.042 3.958 17 N -0.441 5.441 18 C 0.068 3.932 19 C 0.048 3.952 20 C -0.224 4.224 21 C 0.544 3.456 22 F -0.193 7.193 23 F -0.169 7.169 24 F -0.169 7.169 25 H 0.025 0.975 26 H 0.089 0.911 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.384 0.616 30 H 0.181 0.819 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 -9.795 -17.584 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.352 5.352 13 C 0.351 3.649 14 O -0.419 6.419 15 C -0.175 4.175 16 C -0.091 4.091 17 N -0.116 5.116 18 C -0.073 4.073 19 C -0.083 4.083 20 C -0.233 4.233 21 C 0.490 3.510 22 F -0.174 7.174 23 F -0.150 7.150 24 F -0.150 7.150 25 H 0.044 0.956 26 H 0.108 0.892 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.216 0.784 30 H 0.198 0.802 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.567 -9.101 -17.553 20.541 hybrid contribution 0.393 -0.820 0.790 1.204 sum 5.960 -9.920 -16.764 20.370 Atomic orbital electron populations 1.22072 0.98451 0.99017 1.00981 1.18738 0.91013 0.94084 0.79712 0.93189 1.21166 1.32458 1.13185 0.90363 0.92230 1.24883 0.94856 0.94961 0.98986 1.69900 1.35786 1.22369 1.23928 0.86518 0.79123 0.79525 0.81946 1.20228 1.21144 1.20247 1.46336 1.65404 1.13182 1.10265 1.17317 0.78727 0.86590 0.82313 1.90788 1.51047 1.15239 1.84844 1.20621 1.09899 0.93172 0.93840 1.22038 1.02925 0.96984 0.87130 1.43547 1.49958 1.09361 1.08713 1.22199 1.01173 0.82303 1.01610 1.21416 1.04768 0.84485 0.97582 1.20417 1.14432 0.92742 0.95687 1.17227 0.74740 0.85818 0.73263 1.93117 1.93175 1.96537 1.34613 1.93224 1.33451 1.93911 1.94418 1.93225 1.73375 1.72687 1.75707 0.95591 0.89203 0.96480 0.92535 0.78356 0.80162 0.90257 0.89362 0.89094 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.15 0.34 -3.40 16 2 C 0.27 6.93 2.56 -69.08 -0.18 6.75 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.70 -15.12 5.06 -56.06 -0.28 -15.40 16 13 C 0.57 12.27 7.77 -12.59 -0.10 12.18 16 14 O -0.54 -13.93 14.49 5.25 0.08 -13.85 16 15 C -0.17 -2.81 6.29 -103.35 -0.65 -3.46 16 16 C 0.04 0.50 10.83 -16.84 -0.18 0.32 16 17 N -0.44 -4.19 3.09 -124.53 -0.38 -4.57 16 18 C 0.07 0.30 11.04 59.85 0.66 0.96 16 19 C 0.05 0.53 10.79 -16.83 -0.18 0.35 16 20 C -0.22 -3.50 5.77 -102.54 -0.59 -4.09 16 21 C 0.54 9.32 2.88 36.01 0.10 9.42 16 22 F -0.19 -2.76 16.80 2.25 0.04 -2.72 16 23 F -0.17 -3.26 16.52 2.25 0.04 -3.22 16 24 F -0.17 -3.27 16.58 2.25 0.04 -3.24 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.38 6.89 7.48 -40.82 -0.31 6.58 16 30 H 0.18 1.65 7.45 -52.49 -0.39 1.26 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.23 8.13 -51.93 -0.42 -0.19 16 33 H 0.09 0.28 8.13 -51.93 -0.42 -0.14 16 34 H 0.18 1.34 7.96 -52.48 -0.42 0.93 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -34.34 309.21 -4.86 -39.19 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.48 Total: 1.83 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.17 Total: 6.23 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.04 Total: -44.51 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 0.11 Total: -9.18 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.34 -4.86 -39.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116529005.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.219 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds