Wall clock time and date at job start Tue Mar 31 2020 07:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.50704 * 109.47423 * 120.00235 * 2 1 3 5 5 H 1.07995 * 119.99866 * 120.00165 * 4 2 1 6 6 C 1.37875 * 119.99642 * 299.99884 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99682 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46870 * 60.00526 * 8 6 4 10 10 H 1.48504 * 109.46849 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47321 * 299.99966 * 8 6 4 12 12 N 1.46499 * 109.47347 * 240.00532 * 2 1 3 13 13 C 1.34770 * 120.00106 * 84.99486 * 12 2 1 14 14 O 1.21626 * 120.00290 * 0.02562 * 13 12 2 15 15 C 1.47265 * 119.99819 * 180.02562 * 13 12 2 16 16 C 1.36768 * 126.94308 * 0.02562 * 15 13 12 17 17 N 1.34657 * 108.39686 * 179.69666 * 16 15 13 18 18 C 1.46504 * 124.85076 * 180.26087 * 17 16 15 19 19 C 1.36445 * 110.29784 * 0.26847 * 17 16 15 20 20 C 1.34482 * 108.85796 * 359.97438 * 19 17 16 21 21 C 1.50703 * 126.83568 * 179.97438 * 20 19 17 22 22 F 1.39910 * 109.46932 * 0.02562 * 21 20 19 23 23 F 1.39903 * 109.47154 * 120.01928 * 21 20 19 24 24 F 1.39899 * 109.47278 * 240.02705 * 21 20 19 25 25 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47145 * 299.99561 * 1 2 3 27 27 H 1.09001 * 109.47645 * 59.99576 * 1 2 3 28 28 H 0.96998 * 120.00324 * 179.97438 * 7 6 4 29 29 H 0.96998 * 119.99714 * 265.00238 * 12 2 1 30 30 H 1.08002 * 125.80383 * 359.96972 * 16 15 13 31 31 H 1.08999 * 109.46825 * 90.01032 * 18 17 16 32 32 H 1.08998 * 109.47122 * 210.00471 * 18 17 16 33 33 H 1.08997 * 109.47398 * 330.01010 * 18 17 16 34 34 H 1.08005 * 125.57192 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6035 8 14 2.3215 -1.1205 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8259 -2.5203 4.0077 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8580 1.1621 -2.4116 15 6 2.6374 -0.7124 -3.5596 16 6 3.0003 -2.0273 -3.6591 17 7 3.3841 -2.2674 -4.9273 18 6 3.8399 -3.5649 -5.4326 19 6 3.2881 -1.1297 -5.6744 20 6 2.8371 -0.1330 -4.8924 21 6 2.5831 1.2943 -5.3043 22 9 2.8901 1.4499 -6.6604 23 9 1.2364 1.6082 -5.0921 24 9 3.3870 2.1495 -4.5430 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.7090 1.1614 3.4845 29 1 2.2490 -1.6316 -1.1527 30 1 2.9782 -2.7512 -2.8579 31 1 2.9855 -4.1303 -5.8047 32 1 4.5530 -3.4094 -6.2421 33 1 4.3201 -4.1203 -4.6270 34 1 3.5341 -1.0437 -6.7225 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116529005.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:16 Heat of formation + Delta-G solvation = -163.142957 kcal Electronic energy + Delta-G solvation = -23460.340726 eV Core-core repulsion = 19364.306089 eV Total energy + Delta-G solvation = -4096.034637 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 11.91 seconds Orbital eigenvalues (eV) -50.94651 -48.51346 -48.42129 -42.40656 -40.05721 -36.63948 -34.35936 -34.06594 -31.68085 -30.11765 -28.31971 -27.31658 -26.13391 -23.95188 -22.28549 -21.36732 -20.83433 -19.68051 -19.29978 -19.04008 -18.23675 -17.41652 -17.02895 -16.49796 -16.43468 -15.83021 -15.48198 -15.39528 -15.30290 -14.99146 -14.88398 -14.64010 -14.63102 -14.49253 -14.24479 -13.70337 -13.58002 -13.34626 -13.15204 -12.94908 -12.81652 -12.80669 -12.68412 -12.23976 -12.13128 -11.09064 -10.81940 -10.55342 -9.96513 -9.78228 -9.44087 -8.13901 -6.32143 0.65745 0.96196 1.46936 1.50039 1.57683 1.60987 2.04513 2.38690 2.57302 2.70968 3.08254 3.16449 3.21349 3.60465 3.86768 3.96637 4.03509 4.35672 4.54134 4.58665 4.75256 4.85019 4.86232 4.96181 5.12450 5.23303 5.47589 5.64503 5.71784 5.75123 5.95633 6.11855 6.13912 6.75456 7.04852 7.35682 7.63584 8.92662 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020704 B = 0.004592 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.088435 B = 6096.457087 C = 7018.540635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.273 3.727 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.976 3.024 9 H -0.270 1.270 10 H -0.289 1.289 11 H -0.260 1.260 12 N -0.698 5.698 13 C 0.560 3.440 14 O -0.597 6.597 15 C -0.223 4.223 16 C 0.078 3.922 17 N -0.427 5.427 18 C 0.058 3.942 19 C 0.081 3.919 20 C -0.265 4.265 21 C 0.538 3.462 22 F -0.176 7.176 23 F -0.190 7.190 24 F -0.191 7.191 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.006 0.994 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.214 0.786 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 -13.950 -18.833 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.801 3.199 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.347 5.347 13 C 0.349 3.651 14 O -0.480 6.480 15 C -0.232 4.232 16 C -0.057 4.057 17 N -0.100 5.100 18 C -0.080 4.080 19 C -0.051 4.051 20 C -0.273 4.273 21 C 0.483 3.517 22 F -0.158 7.158 23 F -0.172 7.172 24 F -0.172 7.172 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.025 0.975 28 H 0.074 0.926 29 H 0.239 0.761 30 H 0.230 0.770 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.275 -13.331 -18.851 24.207 hybrid contribution -0.091 0.435 1.034 1.126 sum 7.184 -12.895 -17.817 23.137 Atomic orbital electron populations 1.21887 0.98440 0.99466 0.99279 1.18321 0.91014 0.91845 0.81905 0.98875 1.21504 1.32603 1.13623 0.90529 0.90418 1.25866 0.94868 0.95584 1.02499 1.70074 1.37094 1.24062 1.24624 0.85336 0.78582 0.78737 0.77276 1.19550 1.21444 1.18498 1.45995 1.65588 1.13927 1.09189 1.18043 0.77461 0.86148 0.83465 1.90742 1.53472 1.17884 1.85853 1.20208 1.14840 0.95553 0.92579 1.22357 0.99269 0.95240 0.88821 1.43953 1.47714 1.10764 1.07529 1.22690 1.02648 0.79606 1.03093 1.21933 1.01112 0.83437 0.98585 1.20438 1.17939 0.92568 0.96329 1.17551 0.73596 0.86801 0.73721 1.93130 1.92934 1.96573 1.33136 1.93171 1.35125 1.94226 1.94649 1.93170 1.73851 1.73706 1.76514 0.93811 0.91531 0.97480 0.92618 0.76072 0.76984 0.88423 0.86873 0.87210 0.76367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.03 9.26 71.98 0.67 -6.36 16 2 C 0.27 14.78 2.56 44.24 0.11 14.90 16 3 H -0.01 -0.43 7.58 -2.39 -0.02 -0.45 16 4 C -0.54 -29.12 8.73 25.60 0.22 -28.90 16 5 H 0.08 3.78 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -54.11 11.32 21.45 0.24 -53.87 16 8 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 12 N -0.70 -30.53 5.06 -449.54 -2.27 -32.80 16 13 C 0.56 25.29 7.77 86.62 0.67 25.97 16 14 O -0.60 -33.07 14.49 -4.11 -0.06 -33.13 16 15 C -0.22 -7.43 6.29 -19.04 -0.12 -7.55 16 16 C 0.08 1.62 10.83 83.92 0.91 2.53 16 17 N -0.43 -6.03 3.09 -547.89 -1.69 -7.72 16 18 C 0.06 0.14 11.04 127.77 1.41 1.55 16 19 C 0.08 1.49 10.79 83.12 0.90 2.39 16 20 C -0.26 -8.05 5.77 -18.51 -0.11 -8.16 16 21 C 0.54 18.95 2.88 71.24 0.21 19.16 16 22 F -0.18 -4.94 16.80 44.97 0.76 -4.19 16 23 F -0.19 -7.79 16.52 44.97 0.74 -7.05 16 24 F -0.19 -7.86 16.58 44.97 0.75 -7.12 16 25 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.07 3.85 6.07 -2.38 -0.01 3.84 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.40 14.02 7.48 -92.71 -0.69 13.33 16 30 H 0.21 2.88 7.45 -2.91 -0.02 2.85 16 31 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.11 -0.17 8.13 -2.39 -0.02 -0.19 16 33 H 0.11 -0.03 8.13 -2.39 -0.02 -0.05 16 34 H 0.22 2.13 7.96 -2.91 -0.02 2.10 16 Total: -1.00 -82.04 309.21 6.27 -75.78 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.46 Total: 9.46 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 5.32 Total: 16.60 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -3.72 Total: -94.40 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.06 Total: -33.13 kcal Atomic # 9 Polarization: -20.60 SS G_CDS: 2.24 Total: -18.35 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -82.04 6.27 -75.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116529005.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.367 kcal (2) G-P(sol) polarization free energy of solvation -82.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.91 seconds