Wall clock time and date at job start Tue Mar 31 2020 08:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 119.99844 * 2 1 4 4 C 1.50695 * 109.47282 * 270.00246 * 3 2 1 5 5 H 1.08004 * 120.00031 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99853 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99592 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00183 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46981 * 90.00076 * 8 6 4 10 10 H 1.48496 * 109.47074 * 209.99965 * 8 6 4 11 11 H 1.48504 * 109.47114 * 330.00219 * 8 6 4 12 12 C 1.34777 * 120.00368 * 180.02562 * 2 1 3 13 13 O 1.21627 * 120.00023 * 184.54763 * 12 2 1 14 14 C 1.47261 * 119.99662 * 4.54265 * 12 2 1 15 15 C 1.36769 * 126.94363 * 322.94723 * 14 12 2 16 16 N 1.34664 * 108.39736 * 179.97438 * 15 14 12 17 17 C 1.46497 * 124.85057 * 179.72982 * 16 15 14 18 18 C 1.36447 * 110.29491 * 0.02562 * 16 15 14 19 19 C 1.34481 * 108.85992 * 359.97438 * 18 16 15 20 20 C 1.50703 * 126.83599 * 180.02562 * 19 18 16 21 21 F 1.39905 * 109.46834 * 0.02562 * 20 19 18 22 22 F 1.39901 * 109.47110 * 120.00696 * 20 19 18 23 23 F 1.39898 * 109.47062 * 240.00786 * 20 19 18 24 24 H 1.09004 * 109.46864 * 264.81549 * 1 2 3 25 25 H 1.09001 * 109.47230 * 24.81284 * 1 2 3 26 26 H 1.09000 * 109.46884 * 144.81383 * 1 2 3 27 27 H 1.09002 * 109.46945 * 30.00217 * 3 2 1 28 28 H 1.08998 * 109.46855 * 149.99885 * 3 2 1 29 29 H 0.96993 * 119.99486 * 179.97438 * 7 6 4 30 30 H 1.07994 * 125.80649 * 359.94644 * 15 14 12 31 31 H 1.09000 * 109.46873 * 90.01143 * 17 16 15 32 32 H 1.08997 * 109.47225 * 210.00454 * 17 16 15 33 33 H 1.08992 * 109.47389 * 330.00612 * 17 16 15 34 34 H 1.08007 * 125.56734 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0981 1.0959 -2.2417 6 6 3.1259 2.8782 -1.6726 7 7 3.3455 3.2576 -2.9126 8 14 3.7316 3.9301 -0.2528 9 1 5.1050 3.5094 0.1242 10 1 3.7465 5.3566 -0.6648 11 1 2.8249 3.7603 0.9110 12 6 2.1390 -1.1672 -0.0005 13 8 3.3524 -1.1688 0.0830 14 6 1.4062 -2.4404 -0.1021 15 6 0.1976 -2.7407 0.4634 16 7 -0.1247 -4.0052 0.1311 17 6 -1.3463 -4.6959 0.5517 18 6 0.8522 -4.5535 -0.6480 19 6 1.8248 -3.6429 -0.8305 20 6 3.0926 -3.8221 -1.6254 21 9 3.1238 -5.1107 -2.1693 22 9 3.1327 -2.8792 -2.6581 23 9 4.1980 -3.6426 -0.7869 24 1 -0.3633 -0.0929 1.0235 25 1 -0.3634 0.9328 -0.4313 26 1 -0.3633 -0.8399 -0.5922 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5138 29 1 3.8216 4.0838 -3.0898 30 1 -0.3970 -2.0767 1.0733 31 1 -2.1325 -4.5235 -0.1834 32 1 -1.1504 -5.7652 0.6301 33 1 -1.6649 -4.3128 1.5210 34 1 0.8449 -5.5548 -1.0527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116555209.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:01 Heat of formation + Delta-G solvation = -147.823501 kcal Electronic energy + Delta-G solvation = -23881.230246 eV Core-core repulsion = 19785.859910 eV Total energy + Delta-G solvation = -4095.370336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -51.02017 -48.59459 -48.49308 -42.47772 -40.16224 -36.60376 -34.75089 -34.10213 -31.62929 -29.96104 -28.36382 -27.55795 -26.11302 -24.60508 -22.43860 -21.47662 -20.47817 -19.36639 -19.15219 -19.11950 -18.71246 -17.61109 -17.07517 -16.55561 -16.41229 -16.11246 -15.59935 -15.46885 -15.39862 -14.97798 -14.89396 -14.71705 -14.71171 -14.60578 -14.19959 -14.05692 -13.64495 -13.47773 -13.29436 -13.16810 -13.07163 -12.86115 -12.67450 -12.40655 -12.02376 -11.74182 -10.84718 -10.81196 -9.94605 -9.52313 -9.33115 -8.33108 -6.38726 0.75597 0.95231 1.32383 1.38611 1.46380 1.58703 1.98091 2.10664 2.32158 2.58147 3.01174 3.04557 3.15416 3.53408 3.79226 3.90361 3.98129 4.24953 4.40479 4.56150 4.59506 4.65299 4.74743 4.84722 4.87002 4.97218 4.98972 5.22945 5.46829 5.64623 5.76084 6.14591 6.26016 6.62867 6.71220 7.21699 7.44642 8.84473 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.005643 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.447488 B = 4960.416190 C = 5860.791890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.602 5.602 3 C 0.225 3.775 4 C -0.538 4.538 5 H 0.022 0.978 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.232 1.232 12 C 0.563 3.437 13 O -0.591 6.591 14 C -0.219 4.219 15 C 0.075 3.925 16 N -0.428 5.428 17 C 0.059 3.941 18 C 0.085 3.915 19 C -0.271 4.271 20 C 0.531 3.469 21 F -0.174 7.174 22 F -0.199 7.199 23 F -0.186 7.186 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.018 0.982 29 H 0.268 0.732 30 H 0.220 0.780 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.048 -18.941 10.600 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.332 5.332 3 C 0.103 3.897 4 C -0.577 4.577 5 H 0.040 0.960 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.774 3.226 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.155 1.155 12 C 0.352 3.648 13 O -0.473 6.473 14 C -0.228 4.228 15 C -0.059 4.059 16 N -0.100 5.100 17 C -0.080 4.080 18 C -0.048 4.048 19 C -0.279 4.279 20 C 0.477 3.523 21 F -0.155 7.155 22 F -0.181 7.181 23 F -0.167 7.167 24 H 0.111 0.889 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.236 0.764 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -15.700 -18.965 10.640 26.821 hybrid contribution 1.386 0.884 -0.578 1.743 sum -14.313 -18.082 10.062 25.161 Atomic orbital electron populations 1.22205 0.77641 1.03984 1.03035 1.47773 1.08538 1.05425 1.71474 1.19364 0.92915 0.82252 0.95211 1.21582 1.37016 1.06670 0.92424 0.95970 1.25915 0.95138 0.98986 0.98838 1.70071 1.42734 1.24475 1.21466 0.85663 0.79534 0.77609 0.79793 1.20504 1.19744 1.15512 1.18074 0.86528 0.84081 0.76093 1.90737 1.16134 1.88017 1.52409 1.20082 0.99119 0.93473 1.10091 1.22503 0.94503 0.87395 1.01526 1.43977 1.18168 1.10749 1.37092 1.22695 0.82390 0.99370 1.03514 1.21883 0.86997 0.99358 0.96551 1.20407 0.97657 0.98445 1.11372 1.17736 0.84442 0.72984 0.77178 1.93127 1.96961 1.38568 1.86881 1.93192 1.96919 1.66464 1.61513 1.93198 1.56944 1.95024 1.71576 0.88882 0.91237 0.90129 0.92342 0.96415 0.92265 0.76401 0.88344 0.87042 0.86935 0.76451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.08 9.03 127.77 1.15 3.23 16 2 N -0.60 -26.11 2.86 -855.21 -2.44 -28.56 16 3 C 0.22 11.52 4.24 85.63 0.36 11.88 16 4 C -0.54 -33.50 9.94 25.60 0.25 -33.24 16 5 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 6 C 0.01 0.55 5.47 84.65 0.46 1.01 16 7 N -0.95 -62.44 13.96 21.45 0.30 -62.14 16 8 Si 0.95 46.05 27.47 68.60 1.88 47.94 16 9 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.23 -9.90 6.54 99.48 0.65 -9.24 16 12 C 0.56 26.00 7.55 86.62 0.65 26.65 16 13 O -0.59 -33.66 15.39 -4.12 -0.06 -33.72 16 14 C -0.22 -7.47 5.55 -19.04 -0.11 -7.58 16 15 C 0.07 1.50 9.06 83.91 0.76 2.26 16 16 N -0.43 -5.91 3.09 -547.92 -1.69 -7.60 16 17 C 0.06 0.09 11.04 127.77 1.41 1.50 16 18 C 0.08 1.62 10.79 83.11 0.90 2.52 16 19 C -0.27 -8.70 5.77 -18.51 -0.11 -8.81 16 20 C 0.53 20.26 3.31 71.24 0.24 20.50 16 21 F -0.17 -5.31 16.80 44.97 0.76 -4.55 16 22 F -0.20 -9.16 17.30 44.97 0.78 -8.38 16 23 F -0.19 -8.15 16.22 44.97 0.73 -7.42 16 24 H 0.09 1.72 7.35 -2.38 -0.02 1.71 16 25 H 0.07 2.09 8.03 -2.39 -0.02 2.07 16 26 H 0.08 2.00 5.88 -2.39 -0.01 1.99 16 27 H 0.06 2.65 7.13 -2.39 -0.02 2.63 16 28 H 0.02 0.98 6.79 -2.39 -0.02 0.97 16 29 H 0.27 16.36 8.31 -92.71 -0.77 15.59 16 30 H 0.22 2.61 6.24 -2.91 -0.02 2.59 16 31 H 0.10 -0.07 8.14 -2.39 -0.02 -0.08 16 32 H 0.11 -0.22 8.13 -2.39 -0.02 -0.24 16 33 H 0.11 -0.22 8.13 -2.39 -0.02 -0.24 16 34 H 0.22 2.34 7.96 -2.91 -0.02 2.32 16 Total: -1.00 -95.08 305.72 7.31 -87.77 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: 1.09 Total: -3.24 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 5.98 Total: 19.91 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -3.83 Total: -98.29 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.06 Total: -33.72 kcal Atomic # 9 Polarization: -22.62 SS G_CDS: 2.26 Total: -20.35 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.94 kcal Total: -95.08 7.31 -87.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116555209.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.055 kcal (2) G-P(sol) polarization free energy of solvation -95.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds