Wall clock time and date at job start Tue Mar 31 2020 06:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47106 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47098 * 120.00058 * 3 2 1 6 6 H 1.48506 * 109.47095 * 240.00078 * 3 2 1 7 7 C 1.40018 * 119.99733 * 179.72624 * 2 1 3 8 8 H 1.08007 * 120.00237 * 356.31919 * 7 2 1 9 9 C 1.41313 * 120.00090 * 176.31954 * 7 2 1 10 10 C 1.40589 * 119.78714 * 186.43736 * 9 7 2 11 11 C 1.38354 * 119.14885 * 180.02562 * 10 9 7 12 12 C 1.38632 * 118.67757 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49467 * 0.02562 * 12 11 10 14 14 N 1.38823 * 119.58251 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00417 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47403 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47038 * 64.99850 * 16 15 14 18 18 C 1.42901 * 113.99914 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47001 * 179.97438 * 18 17 16 20 20 F 1.39909 * 109.47083 * 60.00249 * 19 18 17 21 21 F 1.39902 * 109.47048 * 180.02562 * 19 18 17 22 22 F 1.39900 * 109.47241 * 300.00293 * 19 18 17 23 23 N 1.31976 * 120.83264 * 359.72501 * 13 12 11 24 24 H 0.96995 * 120.00445 * 175.19866 * 1 2 3 25 25 H 1.08000 * 120.42414 * 359.97296 * 10 9 7 26 26 H 1.07998 * 120.66057 * 180.02562 * 11 10 9 27 27 H 1.07999 * 120.25051 * 179.97438 * 12 11 10 28 28 H 0.97000 * 119.99931 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.46975 * 300.00205 * 15 14 13 30 30 H 1.09001 * 109.47095 * 59.99453 * 15 14 13 31 31 H 1.08998 * 109.47408 * 184.99709 * 16 15 14 32 32 H 1.08997 * 109.46957 * 304.99905 * 16 15 14 33 33 H 1.08997 * 109.47331 * 299.99827 * 18 17 16 34 34 H 1.09004 * 109.47172 * 60.00472 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 0.0006 5 1 3.0952 1.6964 1.2124 6 1 3.0952 1.6964 -1.2126 7 6 2.0075 -1.2126 0.0058 8 1 1.4691 -2.1467 0.0703 9 6 3.4185 -1.2143 -0.0728 10 6 4.1092 -2.4319 -0.2034 11 6 5.4906 -2.4182 -0.2786 12 6 6.1479 -1.1989 -0.2228 13 6 5.4052 -0.0222 -0.0924 14 7 6.0616 1.1998 -0.0358 15 6 7.5237 1.2503 -0.1132 16 6 7.9889 2.7054 -0.0289 17 8 7.6598 3.2369 1.2561 18 6 8.0538 4.5982 1.4402 19 6 7.6531 5.0598 2.8428 20 9 8.2880 4.2574 3.7970 21 9 8.0383 6.3926 3.0229 22 9 6.2662 4.9516 2.9909 23 7 4.0876 -0.0577 -0.0273 24 1 -0.4850 -0.8370 -0.0703 25 1 3.5684 -3.3659 -0.2436 26 1 6.0458 -3.3391 -0.3796 27 1 7.2257 -1.1587 -0.2788 28 1 5.5521 2.0202 0.0550 29 1 7.9511 0.6832 0.7138 30 1 7.8526 0.8182 -1.0583 31 1 9.0681 2.7509 -0.1753 32 1 7.4923 3.2910 -0.8024 33 1 9.1343 4.6825 1.3244 34 1 7.5588 5.2234 0.6971 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116662113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:02 Heat of formation + Delta-G solvation = -178.783741 kcal Electronic energy + Delta-G solvation = -22766.131575 eV Core-core repulsion = 18669.418703 eV Total energy + Delta-G solvation = -4096.712873 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.27230 -47.84920 -47.70044 -38.99569 -38.38506 -35.39959 -33.50810 -31.34572 -30.85248 -29.43033 -27.55003 -25.28512 -23.53178 -22.86453 -21.82088 -20.28285 -18.85322 -18.80042 -18.29900 -18.00112 -16.86970 -16.73205 -16.17507 -15.38878 -14.69901 -14.68167 -14.48257 -14.24775 -14.19129 -14.03876 -13.88790 -13.87962 -13.67277 -13.59146 -12.77372 -12.73000 -12.44108 -12.09656 -11.80070 -11.73780 -11.49883 -10.66502 -10.63068 -10.25905 -10.20272 -9.57616 -9.48640 -8.93518 -8.43607 -7.64607 -7.16274 -6.85311 -4.72834 2.20442 2.71558 2.86060 3.06174 3.56298 3.64537 3.73953 3.76057 3.80683 4.11724 4.19086 4.51504 4.59721 4.69372 4.73231 4.78622 4.95393 5.04897 5.53216 5.68612 5.76727 5.88852 6.30392 6.47529 6.51753 6.63461 6.65516 7.27998 7.47788 7.51519 7.63364 7.91920 8.04912 8.32581 8.51042 8.77381 9.63312 10.07077 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.004563 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.428999 B = 6134.709219 C = 7247.635700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.044 3.956 3 Si 1.161 2.839 4 H -0.339 1.339 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.475 4.475 8 H 0.082 0.918 9 C 0.287 3.713 10 C -0.306 4.306 11 C -0.017 4.017 12 C -0.367 4.367 13 C 0.442 3.558 14 N -0.738 5.738 15 C 0.142 3.858 16 C 0.052 3.948 17 O -0.366 6.366 18 C 0.018 3.982 19 C 0.460 3.540 20 F -0.176 7.176 21 F -0.180 7.180 22 F -0.171 7.171 23 N -0.620 5.620 24 H 0.282 0.718 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.397 0.603 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.727 10.108 0.583 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.177 4.177 3 Si 0.998 3.002 4 H -0.273 1.273 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.508 4.508 8 H 0.100 0.900 9 C 0.163 3.837 10 C -0.329 4.329 11 C -0.041 4.041 12 C -0.393 4.393 13 C 0.205 3.795 14 N -0.375 5.375 15 C 0.016 3.984 16 C -0.024 4.024 17 O -0.285 6.285 18 C -0.061 4.061 19 C 0.406 3.594 20 F -0.158 7.158 21 F -0.161 7.161 22 F -0.152 7.152 23 N -0.349 5.349 24 H 0.093 0.907 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.232 0.768 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.043 12.158 0.881 20.954 hybrid contribution 0.487 -2.193 -0.038 2.247 sum 17.530 9.965 0.843 20.182 Atomic orbital electron populations 1.70658 1.08235 1.32661 1.31407 1.27820 0.95266 1.06312 0.88269 0.81656 0.70213 0.69227 0.79059 1.27314 1.21604 1.22000 1.20761 0.90483 0.96243 1.43267 0.90014 1.18258 0.93287 0.86076 0.86061 1.21391 0.93824 0.97956 1.19696 1.20699 0.94111 0.95860 0.93394 1.20435 0.97906 0.91996 1.28939 1.18036 0.88376 0.84803 0.88276 1.44165 1.04294 1.06241 1.82803 1.21186 0.81953 0.93285 1.01966 1.22975 1.00038 0.95390 0.83968 1.88040 1.81959 1.23144 1.35338 1.23499 1.02570 0.87555 0.92491 1.20190 0.75615 0.74917 0.88702 1.93222 1.81815 1.73343 1.67372 1.93200 1.91105 1.35769 1.96066 1.93264 1.29915 1.95618 1.96441 1.65766 1.06496 1.29026 1.33577 0.90680 0.88140 0.88190 0.88228 0.76778 0.91371 0.90498 0.91062 0.91710 0.88690 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.70 13.65 55.55 0.76 -21.94 16 2 C 0.04 1.25 5.52 -17.35 -0.10 1.15 16 3 Si 1.16 29.67 25.45 -169.99 -4.33 25.34 16 4 H -0.34 -8.56 7.11 56.52 0.40 -8.16 16 5 H -0.29 -7.45 6.97 56.52 0.39 -7.05 16 6 H -0.29 -7.35 6.91 56.52 0.39 -6.96 16 7 C -0.48 -13.42 9.57 -37.75 -0.36 -13.78 16 8 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 9 C 0.29 7.77 6.42 -85.00 -0.55 7.23 16 10 C -0.31 -7.45 9.83 -38.65 -0.38 -7.83 16 11 C -0.02 -0.36 10.15 -39.39 -0.40 -0.76 16 12 C -0.37 -7.71 9.34 -38.87 -0.36 -8.07 16 13 C 0.44 10.05 7.65 -155.32 -1.19 8.86 16 14 N -0.74 -13.56 5.67 -60.40 -0.34 -13.91 16 15 C 0.14 1.81 5.27 -4.04 -0.02 1.79 16 16 C 0.05 0.49 6.07 37.16 0.23 0.71 16 17 O -0.37 -4.23 10.18 -35.23 -0.36 -4.59 16 18 C 0.02 0.14 5.90 37.16 0.22 0.36 16 19 C 0.46 4.85 3.32 37.16 0.12 4.98 16 20 F -0.18 -2.13 17.26 2.25 0.04 -2.09 16 21 F -0.18 -1.74 17.32 2.25 0.04 -1.70 16 22 F -0.17 -2.29 17.26 2.25 0.04 -2.25 16 23 N -0.62 -16.21 4.55 -10.33 -0.05 -16.25 16 24 H 0.28 7.56 8.72 -40.82 -0.36 7.20 16 25 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.10 1.77 6.68 -52.49 -0.35 1.42 16 28 H 0.40 7.39 8.59 -40.82 -0.35 7.04 16 29 H 0.07 0.90 7.92 -51.93 -0.41 0.49 16 30 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -32.18 307.93 -6.00 -38.18 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.65 Total: -0.07 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.79 Total: -5.36 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.37 Total: -52.10 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.36 Total: -4.59 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.12 Total: -6.03 kcal Atomic # 14 Polarization: 29.67 SS G_CDS: -4.33 Total: 25.34 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.18 -6.00 -38.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.608 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds