Wall clock time and date at job start Tue Mar 31 2020 06:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47106 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47098 * 120.00058 * 3 2 1 6 6 H 1.48506 * 109.47095 * 240.00078 * 3 2 1 7 7 C 1.40018 * 119.99733 * 179.72624 * 2 1 3 8 8 H 1.08007 * 120.00237 * 356.31919 * 7 2 1 9 9 C 1.41313 * 120.00090 * 176.31954 * 7 2 1 10 10 C 1.40589 * 119.78714 * 186.43736 * 9 7 2 11 11 C 1.38354 * 119.14885 * 180.02562 * 10 9 7 12 12 C 1.38632 * 118.67757 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49467 * 0.02562 * 12 11 10 14 14 N 1.38823 * 119.58251 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00417 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47403 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47038 * 64.99850 * 16 15 14 18 18 C 1.42901 * 113.99914 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47001 * 179.97438 * 18 17 16 20 20 F 1.39909 * 109.47083 * 60.00249 * 19 18 17 21 21 F 1.39902 * 109.47048 * 180.02562 * 19 18 17 22 22 F 1.39900 * 109.47241 * 300.00293 * 19 18 17 23 23 N 1.31976 * 120.83264 * 359.72501 * 13 12 11 24 24 H 0.96995 * 120.00445 * 175.19866 * 1 2 3 25 25 H 1.08000 * 120.42414 * 359.97296 * 10 9 7 26 26 H 1.07998 * 120.66057 * 180.02562 * 11 10 9 27 27 H 1.07999 * 120.25051 * 179.97438 * 12 11 10 28 28 H 0.97000 * 119.99931 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.46975 * 300.00205 * 15 14 13 30 30 H 1.09001 * 109.47095 * 59.99453 * 15 14 13 31 31 H 1.08998 * 109.47408 * 184.99709 * 16 15 14 32 32 H 1.08997 * 109.46957 * 304.99905 * 16 15 14 33 33 H 1.08997 * 109.47331 * 299.99827 * 18 17 16 34 34 H 1.09004 * 109.47172 * 60.00472 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 0.0006 5 1 3.0952 1.6964 1.2124 6 1 3.0952 1.6964 -1.2126 7 6 2.0075 -1.2126 0.0058 8 1 1.4691 -2.1467 0.0703 9 6 3.4185 -1.2143 -0.0728 10 6 4.1092 -2.4319 -0.2034 11 6 5.4906 -2.4182 -0.2786 12 6 6.1479 -1.1989 -0.2228 13 6 5.4052 -0.0222 -0.0924 14 7 6.0616 1.1998 -0.0358 15 6 7.5237 1.2503 -0.1132 16 6 7.9889 2.7054 -0.0289 17 8 7.6598 3.2369 1.2561 18 6 8.0538 4.5982 1.4402 19 6 7.6531 5.0598 2.8428 20 9 8.2880 4.2574 3.7970 21 9 8.0383 6.3926 3.0229 22 9 6.2662 4.9516 2.9909 23 7 4.0876 -0.0577 -0.0273 24 1 -0.4850 -0.8370 -0.0703 25 1 3.5684 -3.3659 -0.2436 26 1 6.0458 -3.3391 -0.3796 27 1 7.2257 -1.1587 -0.2788 28 1 5.5521 2.0202 0.0550 29 1 7.9511 0.6832 0.7138 30 1 7.8526 0.8182 -1.0583 31 1 9.0681 2.7509 -0.1753 32 1 7.4923 3.2910 -0.8024 33 1 9.1343 4.6825 1.3244 34 1 7.5588 5.2234 0.6971 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116662113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:01 Heat of formation + Delta-G solvation = -200.139779 kcal Electronic energy + Delta-G solvation = -22767.057643 eV Core-core repulsion = 18669.418703 eV Total energy + Delta-G solvation = -4097.638940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.10687 -48.66010 -48.60594 -40.60068 -39.33598 -36.86520 -35.41113 -32.99807 -32.22517 -30.60426 -28.77868 -27.17460 -24.27208 -23.96143 -23.58977 -21.97337 -20.30968 -19.64722 -19.63100 -18.85232 -18.23183 -17.58630 -17.26098 -16.82406 -16.25113 -15.84273 -15.57046 -15.52271 -15.30017 -15.24949 -15.04681 -14.94802 -14.78129 -14.76090 -14.30587 -14.20654 -14.00429 -13.58514 -13.23226 -12.66217 -12.65623 -12.38137 -12.28085 -12.12511 -11.58753 -11.40688 -10.89116 -10.74613 -10.28070 -9.65476 -9.19323 -8.52996 -6.78409 0.81355 1.05039 1.50360 1.57378 1.73879 2.02667 2.31060 2.46552 2.52006 2.71778 2.86044 3.01023 3.43818 3.68056 3.95543 4.12283 4.14709 4.20044 4.28294 4.45023 4.56976 4.71239 4.76404 4.83212 4.85389 4.98695 5.40625 5.50078 5.71676 5.83585 5.88544 5.98773 6.20743 6.58665 6.62505 6.91248 7.75501 7.98933 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.004563 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.428999 B = 6134.709219 C = 7247.635700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.016 3.984 3 Si 1.201 2.799 4 H -0.339 1.339 5 H -0.298 1.298 6 H -0.289 1.289 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.272 3.728 10 C -0.333 4.333 11 C -0.008 4.008 12 C -0.344 4.344 13 C 0.421 3.579 14 N -0.735 5.735 15 C 0.130 3.870 16 C 0.055 3.945 17 O -0.403 6.403 18 C 0.021 3.979 19 C 0.452 3.548 20 F -0.189 7.189 21 F -0.176 7.176 22 F -0.194 7.194 23 N -0.644 5.644 24 H 0.280 0.720 25 H 0.102 0.898 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.394 0.606 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.893 10.784 -0.325 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.200 4.200 3 Si 1.037 2.963 4 H -0.274 1.274 5 H -0.227 1.227 6 H -0.217 1.217 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.147 3.853 10 C -0.355 4.355 11 C -0.032 4.032 12 C -0.370 4.370 13 C 0.184 3.816 14 N -0.370 5.370 15 C 0.007 3.993 16 C -0.020 4.020 17 O -0.323 6.323 18 C -0.057 4.057 19 C 0.398 3.602 20 F -0.170 7.170 21 F -0.157 7.157 22 F -0.176 7.176 23 N -0.374 5.374 24 H 0.090 0.910 25 H 0.121 0.879 26 H 0.162 0.838 27 H 0.161 0.839 28 H 0.228 0.772 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 21.264 12.857 -0.035 24.848 hybrid contribution -0.452 -2.429 0.270 2.486 sum 20.812 10.427 0.235 23.279 Atomic orbital electron populations 1.70671 1.08475 1.32488 1.34345 1.28501 0.95582 1.07938 0.88001 0.81086 0.69243 0.67512 0.78455 1.27372 1.22653 1.21727 1.20734 0.91687 0.95671 1.46842 0.91814 1.18407 0.93126 0.87621 0.86169 1.21528 0.95531 0.97149 1.21326 1.21189 0.93007 0.98002 0.91024 1.20985 1.00012 0.90987 1.24977 1.18580 0.87713 0.87292 0.88063 1.44516 1.06639 1.04559 1.81252 1.21612 0.78336 0.96403 1.02988 1.23059 1.02515 0.93014 0.83400 1.87971 1.82867 1.24893 1.36537 1.23704 1.04923 0.86333 0.90707 1.20726 0.74497 0.75017 0.89941 1.93192 1.81879 1.73755 1.68223 1.93203 1.90907 1.35468 1.96160 1.93216 1.31932 1.95752 1.96654 1.65640 1.08569 1.28947 1.34227 0.90984 0.87946 0.83827 0.83948 0.77192 0.91462 0.88255 0.86844 0.90543 0.85059 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.08 13.65 21.84 0.30 -48.79 16 2 C 0.02 0.91 5.52 85.29 0.47 1.38 16 3 Si 1.20 61.98 25.45 68.60 1.75 63.72 16 4 H -0.34 -17.15 7.11 99.48 0.71 -16.44 16 5 H -0.30 -15.55 6.97 99.48 0.69 -14.86 16 6 H -0.29 -14.47 6.91 99.48 0.69 -13.78 16 7 C -0.52 -30.49 9.57 23.46 0.22 -30.26 16 8 H 0.06 3.82 8.06 -2.91 -0.02 3.80 16 9 C 0.27 14.92 6.42 40.19 0.26 15.18 16 10 C -0.33 -15.96 9.83 22.87 0.22 -15.73 16 11 C -0.01 -0.33 10.15 22.39 0.23 -0.10 16 12 C -0.34 -12.97 9.34 22.73 0.21 -12.75 16 13 C 0.42 18.09 7.65 133.40 1.02 19.11 16 14 N -0.74 -24.81 5.67 -345.00 -1.96 -26.77 16 15 C 0.13 2.72 5.27 86.38 0.46 3.18 16 16 C 0.06 0.76 6.07 71.98 0.44 1.20 16 17 O -0.40 -7.92 10.18 -148.98 -1.52 -9.43 16 18 C 0.02 0.26 5.90 71.98 0.42 0.69 16 19 C 0.45 8.76 3.32 71.98 0.24 9.00 16 20 F -0.19 -4.33 17.26 44.97 0.78 -3.55 16 21 F -0.18 -3.08 17.32 44.97 0.78 -2.31 16 22 F -0.19 -5.09 17.26 44.97 0.78 -4.31 16 23 N -0.64 -33.35 4.55 -186.59 -0.85 -34.20 16 24 H 0.28 15.86 8.72 -92.71 -0.81 15.05 16 25 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 26 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.14 4.15 6.68 -2.91 -0.02 4.13 16 28 H 0.39 13.83 8.59 -92.71 -0.80 13.03 16 29 H 0.07 1.46 7.92 -2.39 -0.02 1.44 16 30 H 0.10 1.68 7.92 -2.39 -0.02 1.66 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.03 307.93 4.52 -68.51 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.28 Total: 6.23 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 4.19 Total: -9.11 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -2.51 Total: -109.75 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -1.52 Total: -9.43 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 2.33 Total: -10.17 kcal Atomic # 14 Polarization: 61.98 SS G_CDS: 1.75 Total: 63.72 kcal Total: -73.03 4.52 -68.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.629 kcal (2) G-P(sol) polarization free energy of solvation -73.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds