Wall clock time and date at job start Tue Mar 31 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86806 * 119.99844 * 2 1 4 4 H 1.48506 * 109.46638 * 269.99731 * 3 2 1 5 5 H 1.48495 * 109.47140 * 29.99886 * 3 2 1 6 6 H 1.48498 * 109.46988 * 150.00197 * 3 2 1 7 7 C 1.38798 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99799 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99682 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46963 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47025 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.46837 * 179.97438 * 12 11 10 14 14 C 1.34226 * 116.99798 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99900 * 179.97438 * 14 13 12 17 17 O 1.42898 * 109.47171 * 180.02562 * 16 14 13 18 18 C 1.42902 * 114.00186 * 180.02562 * 17 16 14 19 19 H 1.09001 * 110.45407 * 332.60363 * 18 17 16 20 20 C 1.54506 * 110.50997 * 209.99839 * 18 17 16 21 21 C 1.54480 * 104.06244 * 241.35363 * 20 18 17 22 22 O 1.44429 * 104.80289 * 23.98035 * 21 20 18 23 23 C 1.44420 * 105.27447 * 319.48752 * 22 21 20 24 24 H 0.97004 * 119.99948 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47552 * 60.00256 * 10 9 7 26 26 H 1.09001 * 109.47613 * 299.99794 * 10 9 7 27 27 H 1.09003 * 109.47028 * 60.00498 * 11 10 9 28 28 H 1.09000 * 109.47151 * 299.99954 * 11 10 9 29 29 H 1.08993 * 109.46973 * 59.99934 * 12 11 10 30 30 H 1.09000 * 109.47218 * 300.00035 * 12 11 10 31 31 H 1.09002 * 109.47152 * 60.00249 * 16 14 13 32 32 H 1.09001 * 109.46980 * 300.00350 * 16 14 13 33 33 H 1.08999 * 110.51308 * 359.97438 * 20 18 17 34 34 H 1.09002 * 110.51394 * 122.57367 * 20 18 17 35 35 H 1.08997 * 110.37117 * 142.81250 * 21 20 18 36 36 H 1.09002 * 110.37302 * 265.03741 * 21 20 18 37 37 H 1.09004 * 110.37423 * 281.68436 * 23 22 21 38 38 H 1.09006 * 110.37273 * 159.33989 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9794 -5.3242 0.0036 12 6 3.1515 -6.3076 0.0038 13 8 2.6423 -7.6675 0.0050 14 6 3.5486 -8.6575 0.0048 15 8 4.7284 -8.3966 0.0042 16 6 3.0948 -10.0946 0.0066 17 8 4.2360 -10.9546 0.0067 18 6 3.9146 -12.3470 0.0077 19 1 2.9456 -12.5139 0.4783 20 6 5.0143 -13.1558 0.7313 21 6 5.5578 -14.1076 -0.3573 22 8 5.2486 -13.4535 -1.6073 23 6 3.9238 -12.9057 -1.4325 24 1 -0.4850 0.8401 0.0004 25 1 3.1245 -3.7305 0.8928 26 1 3.1245 -3.7321 -0.8872 27 1 1.3711 -5.4848 -0.8866 28 1 1.3705 -5.4838 0.8935 29 1 3.7602 -6.1472 0.8936 30 1 3.7600 -6.1479 -0.8863 31 1 2.4944 -10.2871 -0.8825 32 1 2.4963 -10.2855 0.8975 33 1 5.8034 -12.4937 1.0878 34 1 4.5891 -13.7227 1.5595 35 1 6.6355 -14.2309 -0.2500 36 1 5.0584 -15.0748 -0.2995 37 1 3.1723 -13.6879 -1.5407 38 1 3.7462 -12.1055 -2.1510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117336330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:26 Heat of formation + Delta-G solvation = -186.738063 kcal Electronic energy + Delta-G solvation = -19782.692760 eV Core-core repulsion = 16330.642903 eV Total energy + Delta-G solvation = -3452.049857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65025 -39.98080 -37.65709 -36.50821 -33.55990 -32.45627 -31.98942 -29.58305 -28.60264 -26.29734 -25.39520 -23.39730 -21.73148 -21.51082 -21.24084 -18.10341 -17.68341 -17.39045 -17.01820 -16.91067 -16.41775 -16.12237 -15.46357 -15.28552 -14.82957 -14.43815 -14.36713 -13.69650 -13.32393 -13.09348 -12.76899 -12.60193 -12.52951 -12.18250 -12.12660 -11.93914 -11.38657 -11.32947 -11.16451 -11.01479 -10.92463 -10.70314 -10.60104 -10.49764 -10.32545 -9.93080 -9.65123 -9.08843 -8.37775 -6.58160 -6.26102 -3.97301 2.04011 2.04664 3.18659 3.20986 3.27762 3.37091 3.46559 3.58392 3.99536 4.18767 4.30175 4.41213 4.50804 4.60570 4.67114 4.70886 4.87442 4.91733 5.07991 5.11007 5.15235 5.16038 5.24615 5.31243 5.36210 5.45657 5.52478 5.74878 5.84893 6.12544 6.20494 6.38111 6.42224 6.57660 6.64556 7.57994 7.64497 8.33666 9.20393 10.82018 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.062054 B = 0.001959 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.113142 B =14291.700169 C =14476.933498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.074 3.926 13 O -0.354 6.354 14 C 0.459 3.541 15 O -0.488 6.488 16 C 0.068 3.932 17 O -0.351 6.351 18 C 0.054 3.946 19 H 0.085 0.915 20 C -0.156 4.156 21 C 0.045 3.955 22 O -0.368 6.368 23 C 0.023 3.977 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -27.990 1.007 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C 0.000 4.000 13 O -0.272 6.272 14 C 0.300 3.700 15 O -0.374 6.374 16 C -0.010 4.010 17 O -0.270 6.270 18 C -0.004 4.004 19 H 0.103 0.897 20 C -0.193 4.193 21 C -0.032 4.032 22 O -0.286 6.286 23 C -0.054 4.054 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.579 -27.847 0.820 28.233 hybrid contribution 1.566 1.306 0.203 2.049 sum 6.145 -26.541 1.023 27.262 Atomic orbital electron populations 1.70018 1.05924 1.27422 1.47124 1.25022 0.95105 0.99137 0.94506 0.86142 0.79442 0.81411 0.78405 1.20232 1.20723 1.19651 1.22700 0.94609 0.90655 1.58703 0.90814 1.84640 1.08764 0.99253 1.96889 1.23186 1.03477 0.96284 1.03414 1.21294 0.96386 0.91544 1.04357 1.23323 0.97877 0.76034 1.02815 1.86426 1.40017 1.16972 1.83760 1.23021 0.84962 0.88227 0.73801 1.90711 1.18489 1.84673 1.43516 1.21776 0.89259 0.85636 1.04284 1.88097 1.28988 1.14911 1.94999 1.23650 0.99195 0.81378 0.96136 0.89719 1.23105 0.99211 0.98212 0.98785 1.23436 1.01803 0.95035 0.82950 1.89196 1.32215 1.72973 1.34223 1.23991 0.85963 0.98436 0.97029 0.92241 0.91686 0.91681 0.90286 0.90294 0.91000 0.90967 0.88738 0.88622 0.88789 0.89261 0.88637 0.91989 0.91083 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.78 9.50 30.94 0.29 -14.48 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.12 -3.19 21.44 -107.50 -2.30 -5.49 16 10 C -0.12 -2.28 5.67 37.16 0.21 -2.07 16 11 C -0.10 -1.56 5.60 -26.73 -0.15 -1.71 16 12 C 0.07 1.06 5.47 37.16 0.20 1.27 16 13 O -0.35 -4.71 10.22 -39.25 -0.40 -5.11 16 14 C 0.46 5.92 8.03 36.01 0.29 6.21 16 15 O -0.49 -8.14 16.25 -25.48 -0.41 -8.55 16 16 C 0.07 0.57 6.37 36.01 0.23 0.80 16 17 O -0.35 -3.61 9.51 -55.18 -0.52 -4.14 16 18 C 0.05 0.36 3.61 -25.16 -0.09 0.27 16 19 H 0.08 0.33 7.82 -51.93 -0.41 -0.08 16 20 C -0.16 -0.93 6.90 -25.16 -0.17 -1.10 16 21 C 0.04 0.28 7.63 37.93 0.29 0.57 16 22 O -0.37 -3.56 11.65 -35.23 -0.41 -3.97 16 23 C 0.02 0.16 7.38 37.94 0.28 0.44 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 26 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.55 8.11 -51.93 -0.42 0.12 16 33 H 0.09 0.71 8.00 -51.93 -0.42 0.29 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -34.87 342.48 -7.75 -42.62 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -5.86 Total: -4.05 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 1.29 Total: -7.88 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.73 Total: -25.04 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.75 Total: -21.76 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.30 Total: -5.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.87 -7.75 -42.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117336330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.118 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds