Wall clock time and date at job start Tue Mar 31 2020 06:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86806 * 119.99844 * 2 1 4 4 H 1.48506 * 109.46638 * 269.99731 * 3 2 1 5 5 H 1.48495 * 109.47140 * 29.99886 * 3 2 1 6 6 H 1.48498 * 109.46988 * 150.00197 * 3 2 1 7 7 C 1.38798 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99799 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99682 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46963 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47025 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.46837 * 179.97438 * 12 11 10 14 14 C 1.34226 * 116.99798 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99900 * 179.97438 * 14 13 12 17 17 O 1.42898 * 109.47171 * 180.02562 * 16 14 13 18 18 C 1.42902 * 114.00186 * 180.02562 * 17 16 14 19 19 H 1.09001 * 110.45407 * 332.60363 * 18 17 16 20 20 C 1.54506 * 110.50997 * 209.99839 * 18 17 16 21 21 C 1.54480 * 104.06244 * 241.35363 * 20 18 17 22 22 O 1.44429 * 104.80289 * 23.98035 * 21 20 18 23 23 C 1.44420 * 105.27447 * 319.48752 * 22 21 20 24 24 H 0.97004 * 119.99948 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47552 * 60.00256 * 10 9 7 26 26 H 1.09001 * 109.47613 * 299.99794 * 10 9 7 27 27 H 1.09003 * 109.47028 * 60.00498 * 11 10 9 28 28 H 1.09000 * 109.47151 * 299.99954 * 11 10 9 29 29 H 1.08993 * 109.46973 * 59.99934 * 12 11 10 30 30 H 1.09000 * 109.47218 * 300.00035 * 12 11 10 31 31 H 1.09002 * 109.47152 * 60.00249 * 16 14 13 32 32 H 1.09001 * 109.46980 * 300.00350 * 16 14 13 33 33 H 1.08999 * 110.51308 * 359.97438 * 20 18 17 34 34 H 1.09002 * 110.51394 * 122.57367 * 20 18 17 35 35 H 1.08997 * 110.37117 * 142.81250 * 21 20 18 36 36 H 1.09002 * 110.37302 * 265.03741 * 21 20 18 37 37 H 1.09004 * 110.37423 * 281.68436 * 23 22 21 38 38 H 1.09006 * 110.37273 * 159.33989 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9794 -5.3242 0.0036 12 6 3.1515 -6.3076 0.0038 13 8 2.6423 -7.6675 0.0050 14 6 3.5486 -8.6575 0.0048 15 8 4.7284 -8.3966 0.0042 16 6 3.0948 -10.0946 0.0066 17 8 4.2360 -10.9546 0.0067 18 6 3.9146 -12.3470 0.0077 19 1 2.9456 -12.5139 0.4783 20 6 5.0143 -13.1558 0.7313 21 6 5.5578 -14.1076 -0.3573 22 8 5.2486 -13.4535 -1.6073 23 6 3.9238 -12.9057 -1.4325 24 1 -0.4850 0.8401 0.0004 25 1 3.1245 -3.7305 0.8928 26 1 3.1245 -3.7321 -0.8872 27 1 1.3711 -5.4848 -0.8866 28 1 1.3705 -5.4838 0.8935 29 1 3.7602 -6.1472 0.8936 30 1 3.7600 -6.1479 -0.8863 31 1 2.4944 -10.2871 -0.8825 32 1 2.4963 -10.2855 0.8975 33 1 5.8034 -12.4937 1.0878 34 1 4.5891 -13.7227 1.5595 35 1 6.6355 -14.2309 -0.2500 36 1 5.0584 -15.0748 -0.2995 37 1 3.1723 -13.6879 -1.5407 38 1 3.7462 -12.1055 -2.1510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117336330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:25 Heat of formation + Delta-G solvation = -209.601566 kcal Electronic energy + Delta-G solvation = -19783.684196 eV Core-core repulsion = 16330.642903 eV Total energy + Delta-G solvation = -3453.041293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.62977 -40.58014 -38.40714 -37.52850 -34.94136 -34.59094 -32.52442 -30.20444 -29.30231 -27.97731 -27.12081 -23.89035 -22.84086 -22.28562 -22.19424 -19.59983 -18.91135 -18.28324 -17.98950 -17.75018 -17.12600 -16.90489 -16.79087 -16.31435 -16.19432 -15.80634 -15.38780 -15.03013 -14.44747 -14.14020 -13.84708 -13.75066 -13.57375 -13.14022 -12.96806 -12.95489 -12.72683 -12.64191 -12.43165 -12.41009 -12.39014 -11.81758 -11.66086 -11.55611 -11.39359 -11.15705 -11.12456 -10.46089 -10.37514 -8.68677 -8.38998 -6.15400 1.05801 1.11021 1.33691 1.39156 1.48919 1.74282 2.25949 2.78935 2.95548 3.01410 3.27402 3.49396 3.61315 3.82530 3.85219 3.95636 4.06268 4.11760 4.13679 4.18399 4.22619 4.30996 4.45255 4.46899 4.53208 4.67321 4.74644 4.81578 4.88910 5.00510 5.06542 5.09538 5.37093 5.39348 5.71950 6.07319 6.16937 6.64194 7.03639 8.70248 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.062054 B = 0.001959 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.113142 B =14291.700169 C =14476.933498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.073 0.927 9 S -0.182 6.182 10 C -0.094 4.094 11 C -0.085 4.085 12 C 0.081 3.919 13 O -0.351 6.351 14 C 0.457 3.543 15 O -0.533 6.533 16 C 0.072 3.928 17 O -0.387 6.387 18 C 0.050 3.950 19 H 0.122 0.878 20 C -0.155 4.155 21 C 0.039 3.961 22 O -0.407 6.407 23 C 0.018 3.982 24 H 0.272 0.728 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 -29.252 1.438 29.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.690 4.690 8 H 0.091 0.909 9 S 0.047 5.953 10 C -0.243 4.243 11 C -0.123 4.123 12 C 0.006 3.994 13 O -0.268 6.268 14 C 0.300 3.700 15 O -0.422 6.422 16 C -0.005 4.005 17 O -0.307 6.307 18 C -0.007 4.007 19 H 0.139 0.861 20 C -0.193 4.193 21 C -0.037 4.037 22 O -0.327 6.327 23 C -0.059 4.059 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.397 -29.133 1.252 29.489 hybrid contribution 1.635 1.569 0.064 2.267 sum 6.032 -27.564 1.315 28.246 Atomic orbital electron populations 1.70141 1.07593 1.28627 1.47820 1.26051 0.96057 1.03057 0.93715 0.85019 0.78160 0.76430 0.78820 1.19318 1.19819 1.18855 1.23062 0.94845 0.92020 1.59055 0.90857 1.84585 1.12940 1.00712 1.97059 1.23083 1.00863 0.96683 1.03626 1.21106 0.96888 0.89580 1.04720 1.23051 0.96766 0.76705 1.02924 1.86421 1.40089 1.16534 1.83733 1.24055 0.84274 0.89653 0.71973 1.90695 1.20360 1.85345 1.45819 1.22019 0.89017 0.82184 1.07258 1.88060 1.30549 1.16773 1.95300 1.23921 1.01003 0.79543 0.96241 0.86083 1.23153 0.98654 0.97974 0.99471 1.23625 1.02217 0.95913 0.81936 1.89145 1.33815 1.73672 1.36018 1.24172 0.85568 0.99039 0.97136 0.91876 0.91397 0.91440 0.89989 0.89912 0.90908 0.91015 0.85757 0.85139 0.91081 0.86392 0.88819 0.89649 0.88352 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.16 13.22 21.65 0.29 -53.87 16 2 C 0.02 0.93 5.49 84.86 0.47 1.39 16 3 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.54 -31.13 9.50 67.95 0.65 -30.49 16 8 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 9 S -0.18 -9.49 21.44 -56.49 -1.21 -10.70 16 10 C -0.09 -3.67 5.67 71.98 0.41 -3.27 16 11 C -0.08 -2.62 5.60 30.60 0.17 -2.45 16 12 C 0.08 2.23 5.47 71.98 0.39 2.63 16 13 O -0.35 -8.75 10.22 -51.38 -0.53 -9.27 16 14 C 0.46 11.19 8.03 71.24 0.57 11.76 16 15 O -0.53 -17.76 16.25 28.40 0.46 -17.30 16 16 C 0.07 1.02 6.37 71.24 0.45 1.47 16 17 O -0.39 -7.36 9.51 -129.90 -1.24 -8.60 16 18 C 0.05 0.55 3.61 31.61 0.11 0.66 16 19 H 0.12 0.40 7.82 -2.39 -0.02 0.38 16 20 C -0.16 -1.58 6.90 31.61 0.22 -1.37 16 21 C 0.04 0.44 7.63 72.49 0.55 1.00 16 22 O -0.41 -7.64 11.65 -148.98 -1.74 -9.38 16 23 C 0.02 0.21 7.38 72.49 0.53 0.75 16 24 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 30 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.13 0.96 8.11 -2.39 -0.02 0.94 16 33 H 0.07 1.05 8.00 -2.39 -0.02 1.03 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.09 1.20 8.09 -2.38 -0.02 1.18 16 Total: -1.00 -77.26 342.48 3.64 -73.63 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.04 Total: 7.57 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.53 Total: -17.91 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.29 Total: -53.87 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -3.04 Total: -44.55 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -9.49 SS G_CDS: -1.21 Total: -10.70 kcal Total: -77.26 3.64 -73.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117336330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.976 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds