Wall clock time and date at job start Tue Mar 31 2020 08:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48507 * 109.46699 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46958 * 119.99716 * 3 2 1 7 7 C 1.37875 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00042 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99786 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00557 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.47276 * 180.02562 * 13 11 10 15 15 C 1.39715 * 119.99845 * 180.02562 * 14 13 11 16 16 C 1.39035 * 119.92468 * 359.72161 * 15 14 13 17 17 C 1.38346 * 120.14431 * 179.79641 * 16 15 14 18 18 C 1.37616 * 120.05252 * 0.45050 * 17 16 15 19 19 C 1.39776 * 120.42815 * 359.80409 * 18 17 16 20 20 C 1.38646 * 119.92074 * 180.02562 * 15 14 13 21 21 C 1.47452 * 108.04089 * 180.02562 * 19 18 17 22 22 O 1.21473 * 124.89735 * 180.02562 * 21 19 18 23 23 O 1.34338 * 110.20681 * 359.97438 * 21 19 18 24 24 C 1.45378 * 109.02271 * 0.02562 * 23 21 19 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47260 * 60.00047 * 9 7 2 27 27 H 1.08992 * 109.47012 * 300.00047 * 9 7 2 28 28 H 0.97000 * 119.99664 * 0.02562 * 10 9 7 29 29 H 1.09004 * 109.47205 * 60.00496 * 13 11 10 30 30 H 1.09005 * 109.47240 * 300.00706 * 13 11 10 31 31 H 0.96999 * 119.99984 * 0.02562 * 14 13 11 32 32 H 1.07998 * 119.92544 * 0.02562 * 16 15 14 33 33 H 1.07996 * 119.96820 * 180.27674 * 17 16 15 34 34 H 1.07999 * 120.13211 * 359.97438 * 20 15 14 35 35 H 1.09004 * 110.06866 * 119.23517 * 24 23 21 36 36 H 1.08998 * 110.06911 * 240.70591 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1050 0.0011 13 6 2.7331 -6.0288 0.0016 14 7 2.0006 -7.2975 0.0015 15 6 2.6992 -8.5074 0.0025 16 6 4.0896 -8.5056 -0.0022 17 6 4.7859 -9.7010 0.0030 18 6 4.1036 -10.8960 0.0036 19 6 2.7059 -10.9132 0.0030 20 6 2.0044 -9.7072 0.0019 21 6 2.2665 -12.3207 0.0044 22 8 1.1084 -12.6872 0.0039 23 8 3.3317 -13.1394 0.0053 24 6 4.5449 -12.3384 0.0051 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.1567 -3.4354 0.0009 29 1 3.3596 -5.9707 0.8917 30 1 3.3599 -5.9714 -0.8883 31 1 1.0306 -7.2975 0.0007 32 1 4.6270 -7.5688 -0.0062 33 1 5.8659 -9.6962 0.0039 34 1 0.9244 -9.7083 0.0010 35 1 5.1323 -12.5490 0.8988 36 1 5.1333 -12.5509 -0.8875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117574442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:12 Heat of formation + Delta-G solvation = -82.012833 kcal Electronic energy + Delta-G solvation = -21214.793411 eV Core-core repulsion = 17664.133580 eV Total energy + Delta-G solvation = -3550.659831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 5.72 seconds Orbital eigenvalues (eV) -41.74325 -39.58256 -38.65633 -37.60843 -35.42036 -34.36682 -32.51463 -31.51588 -31.11310 -28.58139 -27.19138 -25.68819 -24.57720 -22.70610 -21.72128 -21.02451 -20.00258 -18.27249 -17.62287 -17.35932 -17.02523 -16.44172 -15.83270 -15.51382 -15.45214 -15.22923 -14.84556 -14.56272 -13.96281 -13.95307 -13.91059 -13.77859 -13.53330 -12.82451 -12.81566 -12.21202 -12.08187 -11.86318 -11.77867 -11.30783 -11.10806 -10.96012 -10.49010 -10.43201 -10.28835 -9.54982 -9.42934 -9.40861 -8.86736 -8.11738 -7.71654 -6.26845 -4.35035 0.34795 1.07392 2.27872 2.74511 3.00631 3.02324 3.18388 3.23829 3.25029 3.44140 3.58347 3.88174 3.92513 4.26299 4.45659 4.75658 4.80254 4.81228 5.01921 5.09422 5.13740 5.15371 5.25142 5.26212 5.49333 5.71771 5.87565 5.90229 6.18835 6.41869 6.92793 7.13342 7.18062 7.20278 7.35709 7.49339 7.53372 7.84000 8.37762 8.59275 8.83470 9.31732 10.83176 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.046729 B = 0.002353 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.051509 B =11898.715135 C =12471.979008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.704 5.704 11 C 0.492 3.508 12 O -0.551 6.551 13 C 0.100 3.900 14 N -0.725 5.725 15 C 0.224 3.776 16 C -0.166 4.166 17 C -0.045 4.045 18 C -0.174 4.174 19 C -0.145 4.145 20 C -0.111 4.111 21 C 0.522 3.478 22 O -0.453 6.453 23 O -0.323 6.323 24 C 0.101 3.899 25 H 0.268 0.732 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.394 0.606 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.416 0.584 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.111 -19.247 0.008 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.352 5.352 11 C 0.276 3.724 12 O -0.431 6.431 13 C -0.028 4.028 14 N -0.355 5.355 15 C 0.117 3.883 16 C -0.189 4.189 17 C -0.063 4.063 18 C -0.177 4.177 19 C -0.148 4.148 20 C -0.134 4.134 21 C 0.364 3.636 22 O -0.339 6.339 23 O -0.238 6.238 24 C 0.027 3.973 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.226 0.774 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.255 0.745 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.128 0.872 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.614 -19.437 0.006 23.172 hybrid contribution 0.582 1.284 0.001 1.410 sum 13.197 -18.153 0.007 22.443 Atomic orbital electron populations 1.69958 1.06148 1.27618 1.48406 1.24959 0.94940 0.99547 0.94529 0.86445 0.79410 0.82160 0.78730 1.20010 1.21011 1.20004 1.21151 0.93249 0.90318 1.53868 0.91830 1.19174 0.88210 0.81743 0.97970 1.46421 1.11505 1.05818 1.71472 1.20275 0.89340 0.84665 0.78149 1.90676 1.16651 1.84484 1.51263 1.21196 0.94824 0.83489 1.03293 1.44534 1.09628 1.01188 1.80177 1.17673 0.91451 0.85743 0.93386 1.20904 0.91987 0.98874 1.07162 1.19941 0.99752 0.89395 0.97260 1.20468 0.94194 0.95343 1.07704 1.20406 0.94796 0.93838 1.05748 1.20215 1.00327 0.88734 1.04130 1.20555 0.84611 0.85324 0.73089 1.90893 1.15898 1.82130 1.44937 1.87212 1.16782 1.35078 1.84745 1.22258 0.84542 0.85559 1.04922 0.92249 0.95316 0.95304 0.77353 0.89254 0.89262 0.74497 0.84559 0.84840 0.84646 0.87165 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.25 13.29 55.43 0.74 -24.51 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.55 -14.09 9.28 -34.44 -0.32 -14.41 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 9 C 0.25 6.21 5.43 -5.19 -0.03 6.18 16 10 N -0.70 -13.17 5.55 -61.47 -0.34 -13.51 16 11 C 0.49 8.54 7.90 -10.99 -0.09 8.45 16 12 O -0.55 -11.91 15.67 5.56 0.09 -11.83 16 13 C 0.10 1.15 5.39 -5.20 -0.03 1.12 16 14 N -0.72 -8.69 5.70 -59.83 -0.34 -9.03 16 15 C 0.22 2.38 6.65 -83.82 -0.56 1.83 16 16 C -0.17 -1.39 9.31 -39.25 -0.37 -1.76 16 17 C -0.04 -0.31 10.02 -39.77 -0.40 -0.71 16 18 C -0.17 -1.43 6.38 -104.21 -0.67 -2.09 16 19 C -0.15 -1.60 6.27 -105.09 -0.66 -2.26 16 20 C -0.11 -1.26 9.95 -38.95 -0.39 -1.65 16 21 C 0.52 6.61 8.58 34.48 0.30 6.91 16 22 O -0.45 -7.23 18.04 -18.92 -0.34 -7.57 16 23 O -0.32 -3.37 11.13 -39.17 -0.44 -3.80 16 24 C 0.10 0.62 7.93 36.07 0.29 0.91 16 25 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.39 6.02 8.32 -40.82 -0.34 5.68 16 29 H 0.09 0.83 7.95 -51.93 -0.41 0.42 16 30 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 31 H 0.42 5.61 7.44 -40.82 -0.30 5.31 16 32 H 0.14 0.89 6.71 -52.49 -0.35 0.54 16 33 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 34 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 321.71 15.07 4.85 4.85 Total: -1.00 -33.27 321.71 -7.71 -40.98 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -3.89 Total: 5.25 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -3.01 Total: 4.14 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.05 Total: -47.06 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.69 Total: -23.20 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.27 -7.71 -40.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117574442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.029 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.73 seconds