Wall clock time and date at job start Tue Mar 31 2020 08:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48507 * 109.46699 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46958 * 119.99716 * 3 2 1 7 7 C 1.37875 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00042 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99786 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00557 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.47276 * 180.02562 * 13 11 10 15 15 C 1.39715 * 119.99845 * 180.02562 * 14 13 11 16 16 C 1.39035 * 119.92468 * 359.72161 * 15 14 13 17 17 C 1.38346 * 120.14431 * 179.79641 * 16 15 14 18 18 C 1.37616 * 120.05252 * 0.45050 * 17 16 15 19 19 C 1.39776 * 120.42815 * 359.80409 * 18 17 16 20 20 C 1.38646 * 119.92074 * 180.02562 * 15 14 13 21 21 C 1.47452 * 108.04089 * 180.02562 * 19 18 17 22 22 O 1.21473 * 124.89735 * 180.02562 * 21 19 18 23 23 O 1.34338 * 110.20681 * 359.97438 * 21 19 18 24 24 C 1.45378 * 109.02271 * 0.02562 * 23 21 19 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47260 * 60.00047 * 9 7 2 27 27 H 1.08992 * 109.47012 * 300.00047 * 9 7 2 28 28 H 0.97000 * 119.99664 * 0.02562 * 10 9 7 29 29 H 1.09004 * 109.47205 * 60.00496 * 13 11 10 30 30 H 1.09005 * 109.47240 * 300.00706 * 13 11 10 31 31 H 0.96999 * 119.99984 * 0.02562 * 14 13 11 32 32 H 1.07998 * 119.92544 * 0.02562 * 16 15 14 33 33 H 1.07996 * 119.96820 * 180.27674 * 17 16 15 34 34 H 1.07999 * 120.13211 * 359.97438 * 20 15 14 35 35 H 1.09004 * 110.06866 * 119.23517 * 24 23 21 36 36 H 1.08998 * 110.06911 * 240.70591 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1050 0.0011 13 6 2.7331 -6.0288 0.0016 14 7 2.0006 -7.2975 0.0015 15 6 2.6992 -8.5074 0.0025 16 6 4.0896 -8.5056 -0.0022 17 6 4.7859 -9.7010 0.0030 18 6 4.1036 -10.8960 0.0036 19 6 2.7059 -10.9132 0.0030 20 6 2.0044 -9.7072 0.0019 21 6 2.2665 -12.3207 0.0044 22 8 1.1084 -12.6872 0.0039 23 8 3.3317 -13.1394 0.0053 24 6 4.5449 -12.3384 0.0051 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.1567 -3.4354 0.0009 29 1 3.3596 -5.9707 0.8917 30 1 3.3599 -5.9714 -0.8883 31 1 1.0306 -7.2975 0.0007 32 1 4.6270 -7.5688 -0.0062 33 1 5.8659 -9.6962 0.0039 34 1 0.9244 -9.7083 0.0010 35 1 5.1323 -12.5490 0.8988 36 1 5.1333 -12.5509 -0.8875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117574442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:08 Heat of formation + Delta-G solvation = -106.828853 kcal Electronic energy + Delta-G solvation = -21215.869515 eV Core-core repulsion = 17664.133580 eV Total energy + Delta-G solvation = -3551.735934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 3.89 seconds Orbital eigenvalues (eV) -42.51821 -40.83649 -39.66534 -38.56746 -36.46870 -35.97164 -34.40449 -32.24135 -31.93594 -29.93438 -28.40872 -26.76675 -25.30392 -24.49663 -22.49575 -21.94211 -21.40079 -19.41391 -18.69496 -18.22543 -17.93195 -17.79089 -17.15338 -16.78038 -16.73774 -16.37122 -15.92995 -15.61874 -15.15087 -15.01030 -14.68741 -14.52815 -14.45409 -14.27564 -14.01423 -13.94239 -13.37188 -12.97626 -12.80798 -12.67720 -12.57379 -12.24830 -12.07021 -11.52516 -11.37231 -11.01595 -10.94863 -10.80303 -10.12236 -9.90363 -8.49577 -8.29761 -6.46468 -0.43672 0.41196 1.41943 1.44370 1.47894 1.56085 1.62939 1.90245 2.13772 2.37509 2.65150 2.72007 2.88160 3.05818 3.27013 3.79942 3.83630 4.11240 4.22079 4.33397 4.40905 4.45621 4.48020 4.61167 4.82316 5.00871 5.08738 5.20554 5.21917 5.22121 5.44171 5.53005 5.63339 5.71046 5.82839 6.18127 6.28696 6.52746 6.64590 6.82664 7.22204 7.40641 8.82056 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.046729 B = 0.002353 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.051509 B =11898.715135 C =12471.979008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.265 3.735 10 N -0.698 5.698 11 C 0.488 3.512 12 O -0.601 6.601 13 C 0.118 3.882 14 N -0.740 5.740 15 C 0.208 3.792 16 C -0.154 4.154 17 C -0.035 4.035 18 C -0.155 4.155 19 C -0.174 4.174 20 C -0.134 4.134 21 C 0.519 3.481 22 O -0.507 6.507 23 O -0.332 6.332 24 C 0.095 3.905 25 H 0.268 0.732 26 H -0.012 1.012 27 H -0.012 1.012 28 H 0.414 0.586 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.403 0.597 32 H 0.166 0.834 33 H 0.180 0.820 34 H 0.115 0.885 35 H 0.145 0.855 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.454 -19.154 0.008 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.107 0.893 9 C 0.142 3.858 10 N -0.349 5.349 11 C 0.275 3.725 12 O -0.483 6.483 13 C -0.009 4.009 14 N -0.371 5.371 15 C 0.104 3.896 16 C -0.177 4.177 17 C -0.053 4.053 18 C -0.158 4.158 19 C -0.177 4.177 20 C -0.157 4.157 21 C 0.364 3.636 22 O -0.397 6.397 23 O -0.248 6.248 24 C 0.023 3.977 25 H 0.077 0.923 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.251 0.749 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.240 0.760 32 H 0.183 0.817 33 H 0.198 0.802 34 H 0.133 0.867 35 H 0.163 0.837 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 18.073 -19.389 0.007 26.506 hybrid contribution -1.004 1.139 0.001 1.518 sum 17.070 -18.251 0.008 24.989 Atomic orbital electron populations 1.70132 1.08350 1.28625 1.49997 1.26076 0.95732 1.04003 0.93922 0.85214 0.77882 0.76585 0.79595 1.18525 1.21521 1.18514 1.21602 0.94484 0.90388 1.52822 0.89337 1.18561 0.88716 0.84313 0.94188 1.46068 1.11576 1.05138 1.72069 1.21350 0.89773 0.85415 0.75938 1.90661 1.19515 1.85234 1.52896 1.21213 0.92904 0.80352 1.06421 1.44568 1.09140 1.01836 1.81568 1.17772 0.92543 0.84568 0.94756 1.21348 0.90671 1.00855 1.04799 1.20427 1.01844 0.87897 0.95159 1.20858 0.92581 0.97111 1.05231 1.20374 0.96564 0.92611 1.08111 1.20193 0.99800 0.89835 1.05842 1.20894 0.84456 0.86304 0.71967 1.90847 1.18037 1.83002 1.47776 1.87180 1.17579 1.36006 1.83991 1.22798 0.83060 0.83615 1.08271 0.92317 0.99426 0.99412 0.74921 0.85817 0.85821 0.76030 0.81683 0.80245 0.86674 0.83709 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.98 40.57 29.54 68.60 2.03 42.60 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.56 -28.50 9.28 25.60 0.24 -28.26 16 8 H 0.09 3.99 7.60 -2.91 -0.02 3.97 16 9 C 0.27 13.70 5.43 85.63 0.46 14.17 16 10 N -0.70 -25.84 5.55 -466.79 -2.59 -28.43 16 11 C 0.49 16.86 7.90 87.66 0.69 17.55 16 12 O -0.60 -27.23 15.67 -3.03 -0.05 -27.27 16 13 C 0.12 2.39 5.39 85.63 0.46 2.85 16 14 N -0.74 -17.23 5.70 -343.21 -1.96 -19.18 16 15 C 0.21 4.13 6.65 38.17 0.25 4.38 16 16 C -0.15 -1.88 9.31 22.49 0.21 -1.67 16 17 C -0.04 -0.30 10.02 22.15 0.22 -0.08 16 18 C -0.16 -2.00 6.38 -19.60 -0.13 -2.12 16 19 C -0.17 -3.79 6.27 -20.17 -0.13 -3.92 16 20 C -0.13 -3.14 9.95 22.68 0.23 -2.92 16 21 C 0.52 13.59 8.58 70.25 0.60 14.20 16 22 O -0.51 -17.55 18.04 19.61 0.35 -17.19 16 23 O -0.33 -6.55 11.13 -52.83 -0.59 -7.14 16 24 C 0.10 0.79 7.93 71.28 0.56 1.35 16 25 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 26 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 28 H 0.41 11.70 8.32 -92.71 -0.77 10.93 16 29 H 0.12 1.72 7.95 -2.38 -0.02 1.70 16 30 H 0.12 1.72 7.93 -2.38 -0.02 1.70 16 31 H 0.40 11.49 7.44 -92.71 -0.69 10.80 16 32 H 0.17 1.07 6.71 -2.91 -0.02 1.05 16 33 H 0.18 -0.02 8.06 -2.91 -0.02 -0.05 16 34 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -80.36 321.71 1.31 -79.05 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -0.32 Total: 16.12 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 4.15 Total: 16.11 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -4.26 Total: -102.28 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.28 Total: -51.60 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -80.36 1.31 -79.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117574442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.779 kcal (2) G-P(sol) polarization free energy of solvation -80.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds