Wall clock time and date at job start Tue Mar 31 2020 06:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86795 * 120.00315 * 2 1 4 4 H 1.48505 * 109.47259 * 240.00118 * 3 2 1 5 5 H 1.48504 * 109.46834 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47536 * 119.99459 * 3 2 1 7 7 C 1.40029 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99510 * 180.02562 * 7 2 1 9 9 C 1.41315 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.40580 * 119.78510 * 180.02562 * 9 7 2 11 11 C 1.38349 * 119.14902 * 180.02562 * 10 9 7 12 12 C 1.38641 * 118.67710 * 359.74358 * 11 10 9 13 13 C 1.39754 * 119.49235 * 0.48136 * 12 11 10 14 14 N 1.38828 * 119.58261 * 179.78939 * 13 12 11 15 15 C 1.46496 * 120.00191 * 359.72635 * 14 13 12 16 16 H 1.09001 * 109.47054 * 324.99475 * 15 14 13 17 17 C 1.52997 * 109.46941 * 204.99873 * 15 14 13 18 18 C 1.53000 * 109.47086 * 65.00181 * 17 15 14 19 19 O 1.42903 * 109.47587 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47294 * 84.99744 * 15 14 13 21 21 F 1.39905 * 109.47157 * 179.97438 * 20 15 14 22 22 F 1.39900 * 109.47010 * 60.00333 * 20 15 14 23 23 F 1.39897 * 109.47422 * 300.00024 * 20 15 14 24 24 N 1.31980 * 120.82892 * 359.50654 * 13 12 11 25 25 H 0.96999 * 119.99981 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.43163 * 359.97438 * 10 9 7 27 27 H 1.07999 * 120.66131 * 180.02562 * 11 10 9 28 28 H 1.08001 * 120.25368 * 180.26930 * 12 11 10 29 29 H 0.97005 * 119.99491 * 179.71930 * 14 13 12 30 30 H 1.09000 * 109.47278 * 184.99494 * 17 15 14 31 31 H 1.08994 * 109.47510 * 305.00003 * 17 15 14 32 32 H 1.09000 * 109.46950 * 299.99500 * 18 17 15 33 33 H 1.09003 * 109.47672 * 59.99632 * 18 17 15 34 34 H 0.96695 * 114.00749 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0953 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3010 -2.4365 0.0016 10 6 2.0084 -3.6514 0.0027 11 6 1.3034 -4.8417 0.0032 12 6 -0.0822 -4.7944 0.0081 13 6 -0.7283 -3.5551 0.0021 14 7 -2.1156 -3.5055 0.0026 15 6 -2.8930 -4.7472 0.0032 16 1 -2.3726 -5.5020 -0.5863 17 6 -4.2719 -4.4858 -0.6060 18 6 -4.1148 -4.1075 -2.0801 19 8 -5.4026 -3.8627 -2.6491 20 6 -3.0566 -5.2458 1.4404 21 9 -3.7995 -6.4313 1.4410 22 9 -3.7247 -4.2770 2.1969 23 9 -1.7958 -5.4847 1.9975 24 7 -0.0360 -2.4314 0.0017 25 1 -0.4850 0.8400 -0.0004 26 1 3.0884 -3.6554 0.0023 27 1 1.8221 -5.7890 0.0045 28 1 -0.6579 -5.7081 0.0130 29 1 -2.5703 -2.6486 0.0026 30 1 -4.8815 -5.3858 -0.5250 31 1 -4.7567 -3.6693 -0.0710 32 1 -3.5053 -3.2074 -2.1612 33 1 -3.6300 -4.9240 -2.6153 34 1 -5.3794 -3.6168 -3.5840 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119366629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:22 Heat of formation + Delta-G solvation = -187.696708 kcal Electronic energy + Delta-G solvation = -23769.526250 eV Core-core repulsion = 19672.426882 eV Total energy + Delta-G solvation = -4097.099368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 23.73 seconds Orbital eigenvalues (eV) -51.07189 -48.57005 -48.55191 -40.31421 -38.54788 -37.04356 -35.32489 -33.23540 -32.16160 -30.23119 -28.64016 -27.32706 -24.56647 -23.59128 -22.92765 -21.86353 -19.67040 -19.34221 -19.25899 -18.83360 -18.32709 -17.82115 -16.79796 -16.54211 -16.37905 -15.76112 -15.47111 -15.35013 -15.07989 -14.97649 -14.88403 -14.74441 -14.72470 -14.64772 -14.34966 -13.83068 -13.35077 -13.15017 -12.85100 -12.82775 -12.71785 -12.56723 -12.20315 -12.14380 -11.76864 -11.38131 -10.93627 -10.79266 -9.87851 -9.49242 -8.52250 -8.24761 -6.47595 1.01972 1.28020 1.42359 1.53451 1.57572 1.77171 2.16319 2.25092 2.66700 2.85044 2.98513 3.28174 3.53376 3.80326 3.88629 4.04887 4.16173 4.32862 4.38855 4.54884 4.70178 4.86669 4.92836 4.94892 4.99293 5.04722 5.32504 5.66288 5.90590 5.98993 6.18757 6.41509 6.70485 6.84474 6.84886 7.12137 8.28172 8.48779 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.005289 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.671388 B = 5292.417418 C = 5962.081720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.469 4.469 8 H 0.087 0.913 9 C 0.257 3.743 10 C -0.335 4.335 11 C -0.031 4.031 12 C -0.352 4.352 13 C 0.392 3.608 14 N -0.716 5.716 15 C 0.138 3.862 16 H 0.134 0.866 17 C -0.122 4.122 18 C 0.086 3.914 19 O -0.587 6.587 20 C 0.428 3.572 21 F -0.179 7.179 22 F -0.191 7.191 23 F -0.186 7.186 24 N -0.556 5.556 25 H 0.277 0.723 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.403 0.597 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 -6.957 -3.288 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.501 4.501 8 H 0.105 0.895 9 C 0.131 3.869 10 C -0.358 4.358 11 C -0.055 4.055 12 C -0.378 4.378 13 C 0.153 3.847 14 N -0.352 5.352 15 C 0.028 3.972 16 H 0.152 0.848 17 C -0.159 4.159 18 C 0.008 3.992 19 O -0.396 6.396 20 C 0.371 3.629 21 F -0.161 7.161 22 F -0.172 7.172 23 F -0.168 7.168 24 N -0.277 5.277 25 H 0.087 0.913 26 H 0.121 0.879 27 H 0.147 0.853 28 H 0.136 0.864 29 H 0.240 0.760 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.244 -6.357 -2.670 11.532 hybrid contribution 0.955 0.240 0.017 0.985 sum -8.290 -6.117 -2.653 10.638 Atomic orbital electron populations 1.70209 1.08637 1.28802 1.29494 1.26904 0.95744 1.04204 0.92576 0.85252 0.78664 0.75772 0.79924 1.18334 1.19386 1.18662 1.19911 0.94653 0.90464 1.45077 0.89532 1.18629 0.87481 0.93195 0.87599 1.21720 0.99116 0.93712 1.21291 1.21006 0.93740 0.97216 0.93517 1.20944 0.95040 0.95781 1.26022 1.18790 0.85081 0.90481 0.90352 1.44086 1.01904 1.06659 1.82550 1.21886 0.95775 0.90482 0.89086 0.84836 1.21683 0.92757 1.05278 0.96222 1.21916 0.84690 1.00108 0.92449 1.86355 1.29246 1.92403 1.31612 1.21898 0.73382 0.75333 0.92289 1.93160 1.77264 1.48605 1.97044 1.93140 1.80976 1.63724 1.79379 1.93224 1.41446 1.94358 1.87724 1.68110 1.08047 1.25989 1.25572 0.91284 0.87880 0.85274 0.86397 0.76015 0.87023 0.89909 0.93941 0.91752 0.74963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.65 11.46 21.84 0.25 -39.40 16 2 C 0.03 1.41 5.50 85.29 0.47 1.88 16 3 Si 0.98 38.06 29.56 68.60 2.03 40.09 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.47 -25.54 9.14 23.46 0.21 -25.32 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.26 14.31 6.55 40.19 0.26 14.57 16 10 C -0.34 -16.66 9.83 22.87 0.22 -16.43 16 11 C -0.03 -1.33 10.15 22.39 0.23 -1.11 16 12 C -0.35 -14.96 7.84 22.73 0.18 -14.78 16 13 C 0.39 18.02 7.33 133.40 0.98 19.00 16 14 N -0.72 -26.19 4.60 -324.48 -1.49 -27.68 16 15 C 0.14 3.81 1.87 44.99 0.08 3.90 16 16 H 0.13 3.37 6.45 -2.39 -0.02 3.35 16 17 C -0.12 -2.73 4.88 30.59 0.15 -2.58 16 18 C 0.09 1.86 6.93 71.98 0.50 2.36 16 19 O -0.59 -12.03 13.66 -148.98 -2.04 -14.07 16 20 C 0.43 12.85 2.82 71.98 0.20 13.06 16 21 F -0.18 -4.68 16.71 44.97 0.75 -3.93 16 22 F -0.19 -6.16 16.81 44.97 0.76 -5.41 16 23 F -0.19 -6.70 14.57 44.97 0.66 -6.04 16 24 N -0.56 -30.15 7.89 -186.60 -1.47 -31.62 16 25 H 0.28 13.29 8.29 -92.71 -0.77 12.52 16 26 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 27 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 28 H 0.12 4.26 5.45 -2.91 -0.02 4.24 16 29 H 0.40 15.16 8.72 -92.70 -0.81 14.35 16 30 H 0.11 2.13 7.66 -2.39 -0.02 2.11 16 31 H 0.08 1.97 7.94 -2.39 -0.02 1.96 16 32 H 0.04 1.07 7.75 -2.39 -0.02 1.05 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.40 4.71 9.12 -74.06 -0.68 4.03 16 Total: -1.00 -64.94 302.90 2.62 -62.32 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.31 Total: 31.20 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 3.49 Total: -5.46 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -2.71 Total: -98.70 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -2.04 Total: -14.07 kcal Atomic # 9 Polarization: -17.54 SS G_CDS: 2.16 Total: -15.38 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -64.94 2.62 -62.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119366629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.377 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.74 seconds