Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.34241 * 126.50268 * 260.02697 * 13 12 11 15 15 N 1.36817 * 109.93410 * 179.97438 * 14 13 12 16 16 H 0.97000 * 125.07097 * 179.97438 * 15 14 13 17 17 C 1.37743 * 109.86543 * 359.97438 * 15 14 13 18 18 C 1.39119 * 133.48571 * 180.02562 * 17 15 14 19 19 C 1.37745 * 119.79283 * 179.97438 * 18 17 15 20 20 C 1.38924 * 120.65279 * 359.97438 * 19 18 17 21 21 Cl 1.73598 * 119.74916 * 180.02562 * 20 19 18 22 22 C 1.36721 * 120.50574 * 359.97438 * 20 19 18 23 23 C 1.39646 * 119.74781 * 359.76629 * 22 20 19 24 24 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 25 25 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 26 26 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 27 27 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 28 28 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 29 29 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 30 30 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 31 31 H 1.07997 * 125.03052 * 0.02562 * 14 13 12 32 32 H 1.07997 * 120.10530 * 359.95807 * 18 17 15 33 33 H 1.07994 * 119.67102 * 180.02562 * 19 18 17 34 34 H 1.07995 * 120.12907 * 180.02562 * 22 20 19 35 35 H 1.09007 * 113.75652 * 270.36911 * 24 11 10 36 36 H 1.08992 * 113.86038 * 139.01836 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8703 -5.7197 -2.9549 14 6 0.6261 -7.0386 -2.9019 15 7 -0.3527 -7.3683 -3.7993 16 1 -0.6988 -8.2630 -3.9429 17 6 -0.7735 -6.2402 -4.4683 18 6 -1.7226 -6.0133 -5.4598 19 6 -1.9197 -4.7372 -5.9395 20 6 -1.1797 -3.6716 -5.4426 21 17 -1.4477 -2.0728 -6.0636 22 6 -0.2426 -3.8723 -4.4674 23 6 -0.0311 -5.1574 -3.9636 24 6 2.1611 -3.7399 -0.0455 25 1 -0.4850 0.8400 -0.0004 26 1 0.4835 -2.5465 0.7729 27 1 -0.3212 -2.8279 -1.5258 28 1 1.3294 -2.4995 -2.2139 29 1 2.3663 -4.2117 -2.7493 30 1 2.6199 -5.6522 -1.7349 31 1 1.1275 -7.7361 -2.2473 32 1 -2.3030 -6.8351 -5.8524 33 1 -2.6573 -4.5632 -6.7088 34 1 0.3289 -3.0395 -4.0852 35 1 3.1447 -3.5475 -0.4741 36 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137708496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = 83.028913 kcal Electronic energy + Delta-G solvation = -20220.026701 eV Core-core repulsion = 17117.232782 eV Total energy + Delta-G solvation = -3102.793919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.21731 -38.50131 -37.31134 -35.72226 -33.11044 -32.14739 -30.14504 -29.05921 -27.91159 -25.33341 -24.86530 -22.94899 -22.29937 -21.75414 -19.23564 -18.50945 -17.82422 -16.59791 -16.31558 -15.75453 -14.94533 -14.53286 -14.43137 -14.25144 -13.94221 -13.73338 -13.57763 -12.72814 -12.66361 -12.41475 -12.04240 -11.86017 -11.53197 -11.35731 -10.98788 -10.90094 -10.73340 -10.67424 -10.46622 -10.16926 -9.73856 -9.62625 -9.08898 -8.93514 -8.39431 -8.06930 -7.80526 -7.52028 -5.99091 -4.03865 1.13569 1.51730 2.39479 2.77053 3.15125 3.33909 3.39315 3.41022 3.86055 4.45288 4.71746 4.84822 4.99825 5.14005 5.27387 5.32111 5.38269 5.51378 5.63160 5.84779 5.85613 6.04145 6.05545 6.21720 6.36211 6.43915 6.46821 6.57265 6.66743 6.70968 6.81120 6.90162 7.12552 7.25095 7.32298 7.55357 7.78219 7.97286 8.15953 8.42635 8.98124 9.60835 11.10150 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.005284 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.775452 B = 5297.321837 C = 6912.891981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.038 3.962 10 C 0.020 3.980 11 N -0.486 5.486 12 C 0.089 3.911 13 C -0.133 4.133 14 C 0.052 3.948 15 N -0.596 5.596 16 H 0.414 0.586 17 C 0.096 3.904 18 C -0.123 4.123 19 C -0.094 4.094 20 C -0.063 4.063 21 Cl -0.078 7.078 22 C -0.048 4.048 23 C -0.085 4.085 24 C -0.003 4.003 25 H 0.262 0.738 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.170 0.830 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.054 0.946 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 -14.213 -11.106 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C 0.019 3.981 10 C -0.109 4.109 11 N -0.208 5.208 12 C -0.040 4.040 13 C -0.140 4.140 14 C -0.074 4.074 15 N -0.199 5.199 16 H 0.250 0.750 17 C -0.012 4.012 18 C -0.144 4.144 19 C -0.114 4.114 20 C -0.090 4.090 21 Cl -0.049 7.049 22 C -0.067 4.067 23 C -0.091 4.091 24 C -0.132 4.132 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.187 0.813 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.072 0.928 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.439 -14.572 -10.940 18.384 hybrid contribution 0.808 1.130 -0.522 1.484 sum -1.630 -13.442 -11.463 17.741 Atomic orbital electron populations 1.69952 1.05931 1.26783 1.49527 1.24992 0.94780 0.99004 0.94732 0.86726 0.79693 0.83356 0.78622 1.20257 1.21268 1.20224 1.21045 0.92677 0.90410 1.51639 0.92581 1.20305 0.93691 0.90973 0.93108 1.24121 0.99911 0.86119 1.00718 1.68607 1.25813 1.17245 1.09173 1.20932 0.93093 0.97224 0.92740 1.20232 1.01689 0.92393 0.99730 1.21560 0.93670 0.96519 0.95642 1.41657 1.34935 1.08496 1.34803 0.74976 1.18269 0.98800 0.86859 0.97241 1.19834 0.99350 0.96981 0.98245 1.20587 0.99643 0.90631 1.00495 1.20220 1.01730 0.86243 1.00851 1.98357 1.96018 1.23801 1.86713 1.20318 0.96218 0.96419 0.93739 1.18935 0.99083 0.91993 0.99041 1.24070 0.95357 0.98075 0.95699 0.92845 0.92479 0.91634 0.92950 0.93540 0.91285 0.81303 0.85713 0.85040 0.84614 0.92782 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.18 8.77 -34.44 -0.30 -14.48 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.04 0.97 3.60 -90.84 -0.33 0.64 16 10 C 0.02 0.46 6.90 -2.57 -0.02 0.44 16 11 N -0.49 -9.84 6.15 -239.49 -1.47 -11.31 16 12 C 0.09 1.51 5.33 -4.97 -0.03 1.48 16 13 C -0.13 -2.08 5.88 -102.71 -0.60 -2.69 16 14 C 0.05 0.64 11.73 -16.74 -0.20 0.44 16 15 N -0.60 -6.51 6.07 -10.65 -0.06 -6.58 16 16 H 0.41 2.96 8.96 -40.82 -0.37 2.59 16 17 C 0.10 1.30 7.28 -83.97 -0.61 0.69 16 18 C -0.12 -1.45 10.08 -39.44 -0.40 -1.85 16 19 C -0.09 -1.18 9.79 -39.51 -0.39 -1.57 16 20 C -0.06 -0.95 6.28 -39.88 -0.25 -1.20 16 21 Cl -0.08 -1.15 28.93 -51.86 -1.50 -2.65 16 22 C -0.05 -0.80 9.71 -39.60 -0.38 -1.19 16 23 C -0.09 -1.38 6.35 -105.14 -0.67 -2.05 16 24 C 0.00 -0.07 7.50 -2.76 -0.02 -0.09 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.06 1.59 8.14 -51.93 -0.42 1.16 16 27 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 28 H 0.05 1.23 6.80 -51.93 -0.35 0.88 16 29 H 0.05 0.82 7.38 -51.93 -0.38 0.44 16 30 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.14 2.46 6.85 -52.49 -0.36 2.10 16 35 H 0.05 1.09 7.88 -51.92 -0.41 0.68 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -30.48 320.61 -11.15 -41.63 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.37 Total: 2.51 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -4.29 Total: -19.64 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.80 Total: -42.93 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.48 -11.15 -41.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137708496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.657 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds