Wall clock time and date at job start Tue Mar 31 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.34241 * 126.50268 * 260.02697 * 13 12 11 15 15 N 1.36817 * 109.93410 * 179.97438 * 14 13 12 16 16 H 0.97000 * 125.07097 * 179.97438 * 15 14 13 17 17 C 1.37743 * 109.86543 * 359.97438 * 15 14 13 18 18 C 1.39119 * 133.48571 * 180.02562 * 17 15 14 19 19 C 1.37745 * 119.79283 * 179.97438 * 18 17 15 20 20 C 1.38924 * 120.65279 * 359.97438 * 19 18 17 21 21 Cl 1.73598 * 119.74916 * 180.02562 * 20 19 18 22 22 C 1.36721 * 120.50574 * 359.97438 * 20 19 18 23 23 C 1.39646 * 119.74781 * 359.76629 * 22 20 19 24 24 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 25 25 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 26 26 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 27 27 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 28 28 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 29 29 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 30 30 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 31 31 H 1.07997 * 125.03052 * 0.02562 * 14 13 12 32 32 H 1.07997 * 120.10530 * 359.95807 * 18 17 15 33 33 H 1.07994 * 119.67102 * 180.02562 * 19 18 17 34 34 H 1.07995 * 120.12907 * 180.02562 * 22 20 19 35 35 H 1.09007 * 113.75652 * 270.36911 * 24 11 10 36 36 H 1.08992 * 113.86038 * 139.01836 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8703 -5.7197 -2.9549 14 6 0.6261 -7.0386 -2.9019 15 7 -0.3527 -7.3683 -3.7993 16 1 -0.6988 -8.2630 -3.9429 17 6 -0.7735 -6.2402 -4.4683 18 6 -1.7226 -6.0133 -5.4598 19 6 -1.9197 -4.7372 -5.9395 20 6 -1.1797 -3.6716 -5.4426 21 17 -1.4477 -2.0728 -6.0636 22 6 -0.2426 -3.8723 -4.4674 23 6 -0.0311 -5.1574 -3.9636 24 6 2.1611 -3.7399 -0.0455 25 1 -0.4850 0.8400 -0.0004 26 1 0.4835 -2.5465 0.7729 27 1 -0.3212 -2.8279 -1.5258 28 1 1.3294 -2.4995 -2.2139 29 1 2.3663 -4.2117 -2.7493 30 1 2.6199 -5.6522 -1.7349 31 1 1.1275 -7.7361 -2.2473 32 1 -2.3030 -6.8351 -5.8524 33 1 -2.6573 -4.5632 -6.7088 34 1 0.3289 -3.0395 -4.0852 35 1 3.1447 -3.5475 -0.4741 36 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137708496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:46 Heat of formation + Delta-G solvation = 63.778862 kcal Electronic energy + Delta-G solvation = -20220.861446 eV Core-core repulsion = 17117.232782 eV Total energy + Delta-G solvation = -3103.628664 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.25149 -40.23223 -38.39506 -36.83740 -34.88581 -33.65033 -31.44492 -30.11222 -29.41399 -27.09078 -26.67159 -24.15339 -23.81963 -22.79953 -20.53678 -20.23506 -18.98217 -18.40940 -17.49542 -16.83795 -16.69431 -16.27222 -15.76442 -15.59877 -15.26772 -15.13774 -14.76992 -14.04181 -13.88647 -13.75449 -13.53385 -13.34939 -13.14653 -13.01617 -12.79032 -12.48676 -12.29923 -11.99267 -11.81212 -11.58378 -11.53734 -11.20655 -10.94699 -10.57629 -10.46949 -9.52942 -9.11973 -8.59280 -8.12880 -6.24694 0.07969 0.43716 1.25116 1.41815 1.43438 1.51093 1.71561 2.24987 2.42963 2.76091 3.16578 3.45361 3.70332 3.85507 4.01844 4.18927 4.28859 4.37719 4.49227 4.51027 4.63378 4.64842 4.75540 4.82036 4.87668 4.90260 5.01510 5.04924 5.27033 5.30383 5.37634 5.59362 5.61476 5.64557 5.77226 5.87397 6.08514 6.31780 6.45575 6.76029 6.84195 7.43606 8.96112 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.005284 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.775452 B = 5297.321837 C = 6912.891981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.017 3.983 10 C 0.041 3.959 11 N -0.481 5.481 12 C 0.095 3.905 13 C -0.186 4.186 14 C 0.087 3.913 15 N -0.576 5.576 16 H 0.436 0.564 17 C 0.087 3.913 18 C -0.104 4.104 19 C -0.101 4.101 20 C -0.069 4.069 21 Cl -0.086 7.086 22 C -0.083 4.083 23 C -0.113 4.113 24 C 0.013 3.987 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.028 0.972 30 H 0.098 0.902 31 H 0.210 0.790 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 -17.008 -11.829 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.089 4.089 11 N -0.203 5.203 12 C -0.034 4.034 13 C -0.193 4.193 14 C -0.040 4.040 15 N -0.180 5.180 16 H 0.277 0.723 17 C -0.021 4.021 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.097 4.097 21 Cl -0.057 7.057 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.115 4.115 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.116 0.884 31 H 0.226 0.774 32 H 0.186 0.814 33 H 0.176 0.824 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.076 -17.407 -11.674 21.061 hybrid contribution 0.671 1.879 -0.311 2.019 sum -1.405 -15.528 -11.985 19.665 Atomic orbital electron populations 1.70095 1.07557 1.27497 1.50878 1.25816 0.95549 1.02640 0.94456 0.85677 0.78431 0.78925 0.79057 1.19601 1.21164 1.19054 1.21415 0.93029 0.91579 1.51034 0.92201 1.20321 0.94225 0.92572 0.93082 1.23675 0.97694 0.88404 0.99104 1.68531 1.26250 1.15168 1.10393 1.20872 0.93895 0.97141 0.91469 1.20208 1.03524 0.94026 1.01567 1.22062 0.92033 0.95704 0.94245 1.41649 1.33907 1.08957 1.33487 0.72279 1.18456 0.98960 0.86901 0.97817 1.20294 0.98058 0.97651 0.96454 1.20915 0.99793 0.90256 1.01094 1.20443 1.01863 0.86659 1.00709 1.98344 1.95996 1.24718 1.86685 1.20184 0.97872 0.96358 0.95823 1.19207 1.00225 0.92480 0.99885 1.23923 0.94938 0.95775 0.96863 0.92994 0.95973 0.94661 0.94175 0.95343 0.88374 0.77379 0.81441 0.82378 0.87900 0.91868 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.97 13.29 21.45 0.28 -55.68 16 2 C 0.01 0.84 5.46 84.66 0.46 1.30 16 3 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.53 -29.88 8.77 25.60 0.22 -29.66 16 8 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.02 0.90 3.60 -10.89 -0.04 0.86 16 10 C 0.04 2.00 6.90 86.34 0.60 2.59 16 11 N -0.48 -19.69 6.15 -911.60 -5.61 -25.30 16 12 C 0.09 3.16 5.33 85.56 0.46 3.61 16 13 C -0.19 -5.62 5.88 -18.62 -0.11 -5.73 16 14 C 0.09 1.82 11.73 83.00 0.97 2.80 16 15 N -0.58 -10.27 6.07 -187.60 -1.14 -11.41 16 16 H 0.44 3.99 8.96 -92.71 -0.83 3.16 16 17 C 0.09 2.14 7.28 39.02 0.28 2.43 16 18 C -0.10 -2.12 10.08 22.36 0.23 -1.90 16 19 C -0.10 -2.38 9.79 22.32 0.22 -2.16 16 20 C -0.07 -2.14 6.28 22.08 0.14 -2.00 16 21 Cl -0.09 -2.66 28.93 -2.72 -0.08 -2.74 16 22 C -0.08 -2.96 9.71 22.25 0.22 -2.74 16 23 C -0.11 -3.66 6.35 -20.20 -0.13 -3.78 16 24 C 0.01 0.56 7.50 86.41 0.65 1.21 16 25 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 2.04 6.80 -2.39 -0.02 2.03 16 29 H 0.03 1.04 7.38 -2.39 -0.02 1.02 16 30 H 0.10 2.65 8.08 -2.39 -0.02 2.63 16 31 H 0.21 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.10 4.20 6.85 -2.91 -0.02 4.18 16 35 H 0.06 2.51 7.88 -2.38 -0.02 2.49 16 36 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -70.21 320.61 -0.07 -70.28 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.28 Total: 11.53 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 4.17 Total: -33.19 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -6.46 Total: -92.39 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.08 Total: -2.74 kcal Total: -70.21 -0.07 -70.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137708496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.062 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds