Wall clock time and date at job start Tue Mar 31 2020 07:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39336 * 119.56782 * 2 1 4 4 C 1.36081 * 121.06142 * 179.97438 * 3 2 1 5 5 C 1.40589 * 119.74893 * 0.05163 * 4 3 2 6 6 N 1.33710 * 121.05418 * 179.97438 * 5 4 3 7 7 C 1.31193 * 121.30797 * 179.97438 * 6 5 4 8 8 Cl 1.73604 * 119.14443 * 179.97438 * 7 6 5 9 9 C 1.39507 * 121.70620 * 359.97127 * 7 6 5 10 10 C 1.50696 * 120.03552 * 180.02562 * 9 7 6 11 11 N 1.46508 * 109.47352 * 280.08287 * 10 9 7 12 12 C 1.46506 * 119.99465 * 275.85592 * 11 10 9 13 13 C 1.36934 * 119.99872 * 95.85252 * 11 10 9 14 14 H 1.07994 * 120.00021 * 23.34068 * 13 11 10 15 15 C 1.38814 * 119.99740 * 203.33747 * 13 11 10 16 16 N 1.31621 * 119.99963 * 11.89805 * 15 13 11 17 17 Si 1.86793 * 119.99990 * 191.89692 * 15 13 11 18 18 H 1.48496 * 109.47411 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47032 * 120.00422 * 17 15 13 20 20 H 1.48503 * 109.47363 * 240.00099 * 17 15 13 21 21 C 1.36508 * 119.92670 * 0.28024 * 9 7 6 22 22 C 1.40812 * 118.17585 * 359.51171 * 21 9 7 23 23 C 1.36149 * 119.56522 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.47579 * 269.97698 * 1 2 3 25 25 H 1.09000 * 109.47176 * 29.97614 * 1 2 3 26 26 H 1.09008 * 109.47360 * 149.97747 * 1 2 3 27 27 H 1.08003 * 119.47064 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.12782 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47193 * 160.08158 * 10 9 7 30 30 H 1.09001 * 109.47338 * 40.08012 * 10 9 7 31 31 H 1.08994 * 109.47044 * 86.48959 * 12 11 10 32 32 H 1.08999 * 109.46729 * 206.48895 * 12 11 10 33 33 H 1.09001 * 109.46993 * 326.48877 * 12 11 10 34 34 H 0.96996 * 120.00211 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.91179 * 179.74143 * 21 9 7 36 36 H 1.07997 * 120.19247 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2119 0.0000 4 6 3.5549 1.2474 0.0005 5 6 4.2841 0.0454 0.0000 6 7 5.6212 0.0498 -0.0001 7 6 6.3066 -1.0689 -0.0001 8 17 8.0412 -0.9976 -0.0008 9 6 5.6776 -2.3141 0.0005 10 6 6.5021 -3.5756 0.0011 11 7 6.9716 -3.8528 -1.3587 12 6 6.1057 -4.5650 -2.3017 13 6 8.2198 -3.4460 -1.7483 14 1 8.9871 -3.2738 -1.0081 15 6 8.4988 -3.2552 -3.0946 16 7 7.5191 -3.2344 -3.9733 17 14 10.2648 -3.0279 -3.6594 18 1 11.1721 -3.0922 -2.4856 19 1 10.6201 -4.1044 -4.6186 20 1 10.4062 -1.7071 -4.3231 21 6 4.3146 -2.3887 -0.0046 22 6 3.5829 -1.1856 0.0001 23 6 2.1788 -1.1842 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6389 2.1380 0.0004 28 1 4.0724 2.1953 0.0009 29 1 5.8921 -4.4081 0.3516 30 1 7.3591 -3.4493 0.6627 31 1 5.4560 -3.8515 -2.8084 32 1 6.7195 -5.0840 -3.0379 33 1 5.4973 -5.2895 -1.7602 34 1 7.7140 -3.1007 -4.9140 35 1 3.8112 -3.3441 -0.0084 36 1 1.6348 -2.1172 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137923113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:05 Heat of formation + Delta-G solvation = 66.479918 kcal Electronic energy + Delta-G solvation = -20496.823657 eV Core-core repulsion = 17393.312120 eV Total energy + Delta-G solvation = -3103.511537 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52548 -37.62295 -35.70920 -35.67253 -33.34345 -31.75957 -31.44839 -29.89650 -26.86618 -26.33853 -25.68542 -23.23961 -22.33551 -21.84475 -20.66325 -17.85999 -16.94541 -16.57929 -16.06792 -14.95618 -14.57743 -14.41910 -14.17868 -13.87047 -13.68982 -13.37842 -13.19364 -12.88201 -12.83742 -12.32175 -11.89414 -11.74711 -11.45866 -11.34858 -11.04189 -10.93692 -10.78976 -10.59760 -10.38369 -10.30967 -10.06171 -9.92996 -9.77816 -9.21071 -8.55628 -8.11365 -7.88341 -6.86335 -5.82795 -3.20672 0.65562 1.09908 2.29204 2.50597 3.09206 3.35490 3.43014 3.44277 4.34057 4.48391 4.68805 4.80997 4.90366 5.06906 5.19194 5.28918 5.37416 5.43223 5.51394 5.58100 5.59923 5.65235 5.82526 6.00316 6.02580 6.25731 6.30105 6.39481 6.49975 6.61516 6.69584 6.76628 6.81810 7.07833 7.29037 7.61618 7.77420 8.14049 8.31095 9.13956 9.74285 10.22839 11.23400 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.005081 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.914277 B = 5509.130175 C = 5901.747240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.085 4.085 5 C 0.125 3.875 6 N -0.484 5.484 7 C 0.238 3.762 8 Cl -0.012 7.012 9 C -0.119 4.119 10 C 0.177 3.823 11 N -0.581 5.581 12 C 0.160 3.840 13 C -0.239 4.239 14 H 0.076 0.924 15 C 0.005 3.995 16 N -0.901 5.901 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.288 1.288 21 C -0.069 4.069 22 C -0.091 4.091 23 C -0.098 4.098 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.018 0.982 32 H 0.063 0.937 33 H -0.003 1.003 34 H 0.254 0.746 35 H 0.138 0.862 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.122 3.728 9.078 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.104 4.104 5 C 0.003 3.997 6 N -0.196 5.196 7 C 0.058 3.942 8 Cl 0.017 6.983 9 C -0.127 4.127 10 C 0.050 3.950 11 N -0.299 5.299 12 C 0.015 3.985 13 C -0.368 4.368 14 H 0.094 0.906 15 C -0.194 4.194 16 N -0.544 5.544 17 Si 0.729 3.271 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.215 1.215 21 C -0.097 4.097 22 C -0.093 4.093 23 C -0.117 4.117 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.016 0.984 34 H 0.064 0.936 35 H 0.155 0.845 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.542 4.546 8.838 14.488 hybrid contribution 0.607 -0.296 -0.738 1.001 sum -9.935 4.250 8.099 13.504 Atomic orbital electron populations 1.20787 0.91214 1.02713 1.02110 1.19575 0.96090 0.93074 1.00602 1.20637 0.93796 0.97480 1.01354 1.20700 0.93444 0.96728 0.99506 1.18561 0.88089 0.92874 1.00175 1.67327 1.07257 1.30012 1.14971 1.21806 0.88020 0.89324 0.95054 1.98413 1.05848 1.98436 1.95648 1.21650 0.95084 0.97877 0.98049 1.20121 0.95458 0.89709 0.89761 1.44316 1.14655 1.61990 1.08977 1.20862 0.93088 0.93027 0.91479 1.19359 0.86413 1.39630 0.91440 0.90636 1.25053 0.97388 1.00056 0.96921 1.70066 1.29696 1.52934 1.01724 0.86248 0.84570 0.77568 0.78734 1.20033 1.21464 1.21524 1.21129 0.92853 0.97236 0.98493 1.18817 0.94542 0.94054 1.01861 1.20760 0.92278 0.97928 1.00737 0.91328 0.91637 0.91585 0.85814 0.85099 0.92927 0.91388 0.96396 0.91835 0.98431 0.93594 0.84467 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.98 36.01 0.36 -0.61 16 2 C -0.09 -1.15 5.84 -104.97 -0.61 -1.76 16 3 C -0.11 -1.42 9.58 -39.95 -0.38 -1.80 16 4 C -0.08 -1.30 9.98 -39.47 -0.39 -1.69 16 5 C 0.12 2.31 6.60 -84.86 -0.56 1.75 16 6 N -0.48 -10.07 10.31 -8.09 -0.08 -10.15 16 7 C 0.24 5.04 7.26 -17.35 -0.13 4.91 16 8 Cl -0.01 -0.26 25.02 -51.86 -1.30 -1.55 16 9 C -0.12 -2.37 5.44 -104.78 -0.57 -2.94 16 10 C 0.18 3.53 5.38 -5.19 -0.03 3.50 16 11 N -0.58 -13.94 2.91 -182.50 -0.53 -14.47 16 12 C 0.16 3.79 9.03 59.85 0.54 4.33 16 13 C -0.24 -6.21 7.76 -15.06 -0.12 -6.33 16 14 H 0.08 1.93 7.12 -52.49 -0.37 1.56 16 15 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 16 N -0.90 -25.82 10.72 55.49 0.59 -25.22 16 17 Si 0.90 21.70 29.57 -169.99 -5.03 16.67 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C -0.07 -1.22 9.50 -39.23 -0.37 -1.59 16 22 C -0.09 -1.56 5.74 -106.80 -0.61 -2.17 16 23 C -0.10 -1.36 9.38 -39.51 -0.37 -1.73 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.07 0.53 8.07 -51.92 -0.42 0.11 16 27 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 28 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 30 H 0.07 1.32 7.15 -51.93 -0.37 0.95 16 31 H 0.02 0.46 7.81 -51.93 -0.41 0.06 16 32 H 0.06 1.63 6.74 -51.93 -0.35 1.28 16 33 H 0.00 -0.06 7.99 -51.93 -0.42 -0.47 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.14 2.03 8.05 -52.49 -0.42 1.61 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -30.32 315.92 -9.33 -39.65 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -4.41 Total: -3.59 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.34 Total: -6.09 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.02 Total: -49.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.30 Total: -1.55 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.32 -9.33 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137923113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.128 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds