Wall clock time and date at job start Tue Mar 31 2020 07:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39336 * 119.56782 * 2 1 4 4 C 1.36081 * 121.06142 * 179.97438 * 3 2 1 5 5 C 1.40589 * 119.74893 * 0.05163 * 4 3 2 6 6 N 1.33710 * 121.05418 * 179.97438 * 5 4 3 7 7 C 1.31193 * 121.30797 * 179.97438 * 6 5 4 8 8 Cl 1.73604 * 119.14443 * 179.97438 * 7 6 5 9 9 C 1.39507 * 121.70620 * 359.97127 * 7 6 5 10 10 C 1.50696 * 120.03552 * 180.02562 * 9 7 6 11 11 N 1.46508 * 109.47352 * 280.08287 * 10 9 7 12 12 C 1.46506 * 119.99465 * 275.85592 * 11 10 9 13 13 C 1.36934 * 119.99872 * 95.85252 * 11 10 9 14 14 H 1.07994 * 120.00021 * 23.34068 * 13 11 10 15 15 C 1.38814 * 119.99740 * 203.33747 * 13 11 10 16 16 N 1.31621 * 119.99963 * 11.89805 * 15 13 11 17 17 Si 1.86793 * 119.99990 * 191.89692 * 15 13 11 18 18 H 1.48496 * 109.47411 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47032 * 120.00422 * 17 15 13 20 20 H 1.48503 * 109.47363 * 240.00099 * 17 15 13 21 21 C 1.36508 * 119.92670 * 0.28024 * 9 7 6 22 22 C 1.40812 * 118.17585 * 359.51171 * 21 9 7 23 23 C 1.36149 * 119.56522 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.47579 * 269.97698 * 1 2 3 25 25 H 1.09000 * 109.47176 * 29.97614 * 1 2 3 26 26 H 1.09008 * 109.47360 * 149.97747 * 1 2 3 27 27 H 1.08003 * 119.47064 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.12782 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47193 * 160.08158 * 10 9 7 30 30 H 1.09001 * 109.47338 * 40.08012 * 10 9 7 31 31 H 1.08994 * 109.47044 * 86.48959 * 12 11 10 32 32 H 1.08999 * 109.46729 * 206.48895 * 12 11 10 33 33 H 1.09001 * 109.46993 * 326.48877 * 12 11 10 34 34 H 0.96996 * 120.00211 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.91179 * 179.74143 * 21 9 7 36 36 H 1.07997 * 120.19247 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2119 0.0000 4 6 3.5549 1.2474 0.0005 5 6 4.2841 0.0454 0.0000 6 7 5.6212 0.0498 -0.0001 7 6 6.3066 -1.0689 -0.0001 8 17 8.0412 -0.9976 -0.0008 9 6 5.6776 -2.3141 0.0005 10 6 6.5021 -3.5756 0.0011 11 7 6.9716 -3.8528 -1.3587 12 6 6.1057 -4.5650 -2.3017 13 6 8.2198 -3.4460 -1.7483 14 1 8.9871 -3.2738 -1.0081 15 6 8.4988 -3.2552 -3.0946 16 7 7.5191 -3.2344 -3.9733 17 14 10.2648 -3.0279 -3.6594 18 1 11.1721 -3.0922 -2.4856 19 1 10.6201 -4.1044 -4.6186 20 1 10.4062 -1.7071 -4.3231 21 6 4.3146 -2.3887 -0.0046 22 6 3.5829 -1.1856 0.0001 23 6 2.1788 -1.1842 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6389 2.1380 0.0004 28 1 4.0724 2.1953 0.0009 29 1 5.8921 -4.4081 0.3516 30 1 7.3591 -3.4493 0.6627 31 1 5.4560 -3.8515 -2.8084 32 1 6.7195 -5.0840 -3.0379 33 1 5.4973 -5.2895 -1.7602 34 1 7.7140 -3.1007 -4.9140 35 1 3.8112 -3.3441 -0.0084 36 1 1.6348 -2.1172 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137923113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:02 Heat of formation + Delta-G solvation = 49.669912 kcal Electronic energy + Delta-G solvation = -20497.552594 eV Core-core repulsion = 17393.312120 eV Total energy + Delta-G solvation = -3104.240474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 4.96 seconds Orbital eigenvalues (eV) -41.84057 -38.92360 -37.38976 -37.19038 -34.82485 -33.27351 -32.70866 -31.40804 -28.14316 -27.80339 -27.44555 -24.64021 -23.81876 -23.03347 -22.25719 -19.17447 -18.69685 -18.08483 -17.41891 -16.72176 -15.93155 -15.79686 -15.39604 -15.36447 -15.15419 -14.88717 -14.40577 -14.29104 -14.14885 -13.53412 -13.15189 -13.07853 -12.94176 -12.91471 -12.62759 -12.54996 -12.32371 -12.23645 -12.11882 -11.86642 -11.64086 -11.53389 -11.36450 -10.70902 -10.48850 -9.46676 -9.08877 -8.76855 -7.82141 -5.23789 -0.60482 -0.20524 0.97661 1.02496 1.42128 1.45450 1.52948 1.85955 2.52655 3.04615 3.34580 3.46898 3.67138 3.75261 3.83962 3.88512 3.97552 4.19153 4.35527 4.38378 4.53761 4.76544 4.79084 4.89287 4.92843 4.95551 4.99551 5.07967 5.17935 5.27749 5.35978 5.38482 5.54266 5.60379 5.67081 5.76896 5.93378 6.36882 6.71730 7.18591 7.87081 8.30100 9.23792 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.005081 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.914277 B = 5509.130175 C = 5901.747240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.110 4.110 5 C 0.098 3.902 6 N -0.508 5.508 7 C 0.210 3.790 8 Cl -0.029 7.029 9 C -0.143 4.143 10 C 0.181 3.819 11 N -0.600 5.600 12 C 0.177 3.823 13 C -0.226 4.226 14 H 0.075 0.925 15 C -0.048 4.048 16 N -0.939 5.939 17 Si 0.944 3.056 18 H -0.264 1.264 19 H -0.289 1.289 20 H -0.301 1.301 21 C -0.051 4.051 22 C -0.109 4.109 23 C -0.103 4.103 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.163 0.837 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.067 0.933 31 H -0.012 1.012 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.244 0.756 35 H 0.170 0.830 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.614 4.028 10.610 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.110 4.110 4 C -0.129 4.129 5 C -0.023 4.023 6 N -0.219 5.219 7 C 0.031 3.969 8 Cl 0.000 7.000 9 C -0.149 4.149 10 C 0.054 3.946 11 N -0.320 5.320 12 C 0.032 3.968 13 C -0.357 4.357 14 H 0.093 0.907 15 C -0.242 4.242 16 N -0.586 5.586 17 Si 0.773 3.227 18 H -0.189 1.189 19 H -0.216 1.216 20 H -0.228 1.228 21 C -0.078 4.078 22 C -0.111 4.111 23 C -0.121 4.121 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.180 0.820 28 H 0.154 0.846 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.006 0.994 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.187 0.813 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.046 4.862 10.434 18.160 hybrid contribution 1.304 -0.209 -0.975 1.642 sum -12.741 4.653 9.459 16.537 Atomic orbital electron populations 1.20888 0.87929 1.04173 1.03684 1.20118 0.98390 0.92252 0.97704 1.21160 0.92794 0.99482 0.97591 1.20929 0.94737 0.96015 1.01170 1.19133 0.87576 0.94890 1.00725 1.67259 1.08768 1.30290 1.15603 1.21953 0.87580 0.90224 0.97133 1.98386 1.07202 1.98500 1.95946 1.21596 0.96099 0.97028 1.00191 1.20157 0.96074 0.90872 0.87453 1.44349 1.14611 1.63154 1.09914 1.20572 0.92308 0.92649 0.91295 1.19495 0.87701 1.37338 0.91158 0.90714 1.25566 0.99735 1.01541 0.97394 1.70208 1.30818 1.56366 1.01245 0.85526 0.82107 0.76586 0.78443 1.18860 1.21573 1.22833 1.21588 0.92098 0.98923 0.95199 1.19117 0.96300 0.93318 1.02372 1.21118 0.90742 1.00081 1.00174 0.89477 0.89996 0.90483 0.81994 0.84553 0.89759 0.91499 0.99408 0.94753 0.94643 0.94675 0.81310 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.98 71.24 0.71 -0.56 16 2 C -0.08 -1.68 5.84 -20.09 -0.12 -1.80 16 3 C -0.09 -1.91 9.58 22.03 0.21 -1.70 16 4 C -0.11 -3.16 9.98 22.34 0.22 -2.94 16 5 C 0.10 3.57 6.60 40.28 0.27 3.84 16 6 N -0.51 -21.48 10.31 -179.52 -1.85 -23.33 16 7 C 0.21 9.07 7.26 85.09 0.62 9.69 16 8 Cl -0.03 -1.25 25.02 -2.72 -0.07 -1.32 16 9 C -0.14 -5.61 5.44 -19.96 -0.11 -5.72 16 10 C 0.18 7.06 5.38 85.63 0.46 7.52 16 11 N -0.60 -28.89 2.91 -731.30 -2.13 -31.01 16 12 C 0.18 8.40 9.03 127.77 1.15 9.56 16 13 C -0.23 -12.01 7.76 84.03 0.65 -11.36 16 14 H 0.08 3.89 7.12 -2.91 -0.02 3.87 16 15 C -0.05 -2.68 5.07 84.86 0.43 -2.25 16 16 N -0.94 -56.06 10.72 21.65 0.23 -55.83 16 17 Si 0.94 45.98 29.57 68.60 2.03 48.01 16 18 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 21 C -0.05 -1.69 9.50 22.50 0.21 -1.48 16 22 C -0.11 -3.52 5.74 -21.27 -0.12 -3.64 16 23 C -0.10 -2.43 9.38 22.31 0.21 -2.22 16 24 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 26 H 0.08 0.79 8.07 -2.38 -0.02 0.77 16 27 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 29 H 0.08 2.70 7.87 -2.39 -0.02 2.68 16 30 H 0.07 2.59 7.15 -2.39 -0.02 2.57 16 31 H -0.01 -0.66 7.81 -2.39 -0.02 -0.68 16 32 H 0.03 1.80 6.74 -2.39 -0.02 1.78 16 33 H 0.04 1.38 7.99 -2.39 -0.02 1.36 16 34 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.17 4.36 8.05 -2.91 -0.02 4.33 16 36 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -69.44 315.92 4.10 -65.34 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.09 Total: 1.20 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.80 Total: -3.06 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -3.75 Total: -110.17 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.07 Total: -1.32 kcal Total: -69.44 4.10 -65.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137923113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.008 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.96 seconds