Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99764 * 2 1 4 4 H 1.48501 * 109.47199 * 270.00080 * 3 2 1 5 5 H 1.48494 * 109.47111 * 30.00360 * 3 2 1 6 6 H 1.48496 * 109.46869 * 150.00310 * 3 2 1 7 7 C 1.37877 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00155 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99795 * 179.97438 * 7 2 1 10 10 C 1.53515 * 114.16791 * 179.97438 * 9 7 2 11 11 N 1.47479 * 87.93617 * 220.13875 * 10 9 7 12 12 C 1.46898 * 111.00061 * 138.70149 * 11 10 9 13 13 C 1.50706 * 109.46918 * 170.00184 * 12 11 10 14 14 C 1.34239 * 126.49966 * 259.97580 * 13 12 11 15 15 N 1.36808 * 109.93466 * 180.02562 * 14 13 12 16 16 H 0.97000 * 125.07027 * 180.02562 * 15 14 13 17 17 C 1.37729 * 109.86841 * 0.02562 * 15 14 13 18 18 C 1.40661 * 107.15264 * 359.97438 * 17 15 14 19 19 C 1.39635 * 119.93899 * 179.97438 * 18 17 15 20 20 C 1.36647 * 119.78585 * 0.28028 * 19 18 17 21 21 C 1.38798 * 120.53586 * 359.41324 * 20 19 18 22 22 C 1.37890 * 120.65165 * 0.60271 * 21 20 19 23 23 Cl 1.73592 * 120.12381 * 179.67442 * 22 21 20 24 24 C 1.47483 * 87.83241 * 27.00991 * 11 10 9 25 25 H 0.97004 * 120.00292 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.26352 * 312.94784 * 9 7 2 27 27 H 1.09003 * 113.47191 * 105.37216 * 10 9 7 28 28 H 1.08998 * 113.53659 * 334.91867 * 10 9 7 29 29 H 1.08998 * 109.46961 * 50.00569 * 12 11 10 30 30 H 1.08997 * 109.47147 * 290.00182 * 12 11 10 31 31 H 1.08006 * 125.03127 * 0.02562 * 14 13 12 32 32 H 1.08002 * 120.10416 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.73400 * 179.70224 * 20 19 18 34 34 H 1.08001 * 119.67272 * 180.27824 * 21 20 19 35 35 H 1.09007 * 113.47381 * 87.75543 * 24 11 10 36 36 H 1.08995 * 113.47774 * 218.21896 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.1401 -2.5945 -0.0010 11 7 5.1467 -2.0844 0.9485 12 6 5.4214 -3.0689 2.0037 13 6 6.6176 -2.6248 2.8058 14 6 7.8764 -3.0730 2.6769 15 7 8.6911 -2.4400 3.5754 16 1 9.6435 -2.5971 3.6710 17 6 7.9574 -1.5466 4.3240 18 6 6.6268 -1.6231 3.8745 19 6 5.6462 -0.8196 4.4598 20 6 5.9855 0.0426 5.4640 21 6 7.2956 0.1181 5.9161 22 6 8.2800 -0.6659 5.3524 23 17 9.9158 -0.5543 5.9227 24 6 4.1449 -1.0980 1.3940 25 1 -0.4851 0.8401 0.0004 26 1 3.9417 -0.5114 -0.7341 27 1 4.5593 -2.8822 -0.9652 28 1 3.4928 -3.3621 0.4230 29 1 5.6273 -4.0388 1.5509 30 1 4.5544 -3.1505 2.6591 31 1 8.1983 -3.8223 1.9688 32 1 4.6237 -0.8760 4.1164 33 1 5.2273 0.6672 5.9128 34 1 7.5475 0.8013 6.7137 35 1 3.4980 -1.4654 2.1907 36 1 4.5681 -0.1175 1.6122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138830650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = 86.705151 kcal Electronic energy + Delta-G solvation = -20191.460332 eV Core-core repulsion = 17088.825826 eV Total energy + Delta-G solvation = -3102.634505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33585 -39.00121 -37.30717 -36.36279 -33.13127 -32.17835 -30.18288 -29.41044 -28.32223 -25.56576 -24.97904 -22.92105 -22.24848 -21.95434 -19.33795 -18.67030 -17.96257 -16.98681 -16.46619 -15.72074 -15.24378 -14.63516 -14.57534 -14.47172 -14.29210 -13.86034 -13.43867 -12.95916 -12.62028 -12.50087 -12.46589 -11.98322 -11.71660 -11.51531 -11.34463 -11.20005 -11.00558 -10.88395 -10.28772 -9.94881 -9.94171 -9.70393 -9.25203 -9.10678 -8.54289 -8.31130 -8.10194 -7.60586 -6.09567 -4.09810 0.94869 1.51805 2.00330 2.63509 3.02592 3.31242 3.39894 3.45917 3.77955 4.43676 4.64942 4.82877 4.87962 4.98868 5.12172 5.19905 5.30320 5.42392 5.50443 5.70745 5.79433 5.87223 5.88814 6.05408 6.17672 6.25132 6.36408 6.47501 6.51952 6.54092 6.62475 6.73590 6.80996 7.01438 7.07414 7.37969 7.42746 7.70523 7.90673 8.49966 8.93597 9.53878 11.02908 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.004291 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.890032 B = 6523.654833 C = 7343.279170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.511 4.511 8 H 0.074 0.926 9 C -0.001 4.001 10 C 0.007 3.993 11 N -0.478 5.478 12 C 0.089 3.911 13 C -0.137 4.137 14 C 0.056 3.944 15 N -0.591 5.591 16 H 0.415 0.585 17 C 0.102 3.898 18 C -0.084 4.084 19 C -0.054 4.054 20 C -0.142 4.142 21 C -0.089 4.089 22 C -0.051 4.051 23 Cl -0.086 7.086 24 C -0.006 4.006 25 H 0.264 0.736 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.172 0.828 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.063 0.937 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.726 -3.872 10.854 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.121 4.121 11 N -0.200 5.200 12 C -0.040 4.040 13 C -0.144 4.144 14 C -0.070 4.070 15 N -0.194 5.194 16 H 0.252 0.748 17 C -0.006 4.006 18 C -0.089 4.089 19 C -0.073 4.073 20 C -0.162 4.162 21 C -0.109 4.109 22 C -0.080 4.080 23 Cl -0.058 7.058 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.189 0.811 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.511 -3.620 10.671 21.671 hybrid contribution 0.312 0.551 0.500 0.807 sum 18.823 -3.070 11.171 22.103 Atomic orbital electron populations 1.69909 1.06417 1.27088 1.50288 1.24997 0.94602 0.99185 0.93982 0.86905 0.80868 0.83456 0.78726 1.20340 1.21524 1.18010 1.20925 0.88298 0.94477 1.51152 0.90811 1.20509 0.96139 0.92799 0.92596 1.23804 0.92593 0.99462 0.96269 1.68908 1.31226 1.09650 1.10199 1.20950 0.93858 0.96001 0.93169 1.20187 0.94872 1.00306 0.99039 1.21598 0.89788 1.00207 0.95384 1.41650 1.10457 1.35275 1.32003 0.74793 1.17801 0.91881 0.95225 0.95728 1.19050 0.91434 0.99875 0.98544 1.20577 0.99247 0.93318 0.94147 1.20591 0.95606 1.00990 0.99020 1.20725 0.91856 0.98373 0.99920 1.19789 0.85983 1.02638 0.99588 1.98337 1.20965 1.97773 1.88689 1.24398 0.92150 0.95980 1.00979 0.92622 0.92726 0.91621 0.92095 0.90910 0.93039 0.81120 0.85099 0.85068 0.84968 0.91894 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 21.15 27.14 -169.99 -4.61 16.54 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.26 -5.94 5.68 56.52 0.32 -5.62 16 7 C -0.51 -13.89 9.38 -34.44 -0.32 -14.22 16 8 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.00 -0.02 2.95 -91.24 -0.27 -0.29 16 10 C 0.01 0.14 7.24 -7.55 -0.05 0.09 16 11 N -0.48 -8.87 6.32 -246.10 -1.55 -10.42 16 12 C 0.09 1.38 5.34 -4.97 -0.03 1.36 16 13 C -0.14 -2.00 5.90 -102.71 -0.61 -2.61 16 14 C 0.06 0.66 11.73 -16.74 -0.20 0.47 16 15 N -0.59 -6.69 6.07 -10.63 -0.06 -6.75 16 16 H 0.42 3.54 8.96 -40.82 -0.37 3.18 16 17 C 0.10 1.39 7.07 -83.95 -0.59 0.80 16 18 C -0.08 -1.26 6.35 -105.14 -0.67 -1.93 16 19 C -0.05 -0.79 10.05 -39.64 -0.40 -1.19 16 20 C -0.14 -1.79 9.97 -39.95 -0.40 -2.18 16 21 C -0.09 -1.06 9.80 -39.50 -0.39 -1.44 16 22 C -0.05 -0.64 6.33 -39.36 -0.25 -0.89 16 23 Cl -0.09 -0.93 28.97 -51.86 -1.50 -2.43 16 24 C -0.01 -0.13 6.20 -7.55 -0.05 -0.17 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.05 1.29 7.04 -51.93 -0.37 0.93 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 29 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.05 0.83 7.30 -51.93 -0.38 0.45 16 31 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.13 1.95 7.26 -52.49 -0.38 1.57 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.06 1.32 7.10 -51.93 -0.37 0.95 16 36 H 0.06 1.33 7.11 -51.93 -0.37 0.96 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -30.50 315.55 -10.91 -41.41 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.39 Total: 3.28 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -4.31 Total: -20.22 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.85 Total: -43.33 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.61 Total: 16.54 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.50 -10.91 -41.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138830650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.115 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds