Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99764 * 2 1 4 4 H 1.48501 * 109.47199 * 270.00080 * 3 2 1 5 5 H 1.48494 * 109.47111 * 30.00360 * 3 2 1 6 6 H 1.48496 * 109.46869 * 150.00310 * 3 2 1 7 7 C 1.37877 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00155 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99795 * 179.97438 * 7 2 1 10 10 C 1.53515 * 114.16791 * 179.97438 * 9 7 2 11 11 N 1.47479 * 87.93617 * 220.13875 * 10 9 7 12 12 C 1.46898 * 111.00061 * 138.70149 * 11 10 9 13 13 C 1.50706 * 109.46918 * 170.00184 * 12 11 10 14 14 C 1.34239 * 126.49966 * 259.97580 * 13 12 11 15 15 N 1.36808 * 109.93466 * 180.02562 * 14 13 12 16 16 H 0.97000 * 125.07027 * 180.02562 * 15 14 13 17 17 C 1.37729 * 109.86841 * 0.02562 * 15 14 13 18 18 C 1.40661 * 107.15264 * 359.97438 * 17 15 14 19 19 C 1.39635 * 119.93899 * 179.97438 * 18 17 15 20 20 C 1.36647 * 119.78585 * 0.28028 * 19 18 17 21 21 C 1.38798 * 120.53586 * 359.41324 * 20 19 18 22 22 C 1.37890 * 120.65165 * 0.60271 * 21 20 19 23 23 Cl 1.73592 * 120.12381 * 179.67442 * 22 21 20 24 24 C 1.47483 * 87.83241 * 27.00991 * 11 10 9 25 25 H 0.97004 * 120.00292 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.26352 * 312.94784 * 9 7 2 27 27 H 1.09003 * 113.47191 * 105.37216 * 10 9 7 28 28 H 1.08998 * 113.53659 * 334.91867 * 10 9 7 29 29 H 1.08998 * 109.46961 * 50.00569 * 12 11 10 30 30 H 1.08997 * 109.47147 * 290.00182 * 12 11 10 31 31 H 1.08006 * 125.03127 * 0.02562 * 14 13 12 32 32 H 1.08002 * 120.10416 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.73400 * 179.70224 * 20 19 18 34 34 H 1.08001 * 119.67272 * 180.27824 * 21 20 19 35 35 H 1.09007 * 113.47381 * 87.75543 * 24 11 10 36 36 H 1.08995 * 113.47774 * 218.21896 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.1401 -2.5945 -0.0010 11 7 5.1467 -2.0844 0.9485 12 6 5.4214 -3.0689 2.0037 13 6 6.6176 -2.6248 2.8058 14 6 7.8764 -3.0730 2.6769 15 7 8.6911 -2.4400 3.5754 16 1 9.6435 -2.5971 3.6710 17 6 7.9574 -1.5466 4.3240 18 6 6.6268 -1.6231 3.8745 19 6 5.6462 -0.8196 4.4598 20 6 5.9855 0.0426 5.4640 21 6 7.2956 0.1181 5.9161 22 6 8.2800 -0.6659 5.3524 23 17 9.9158 -0.5543 5.9227 24 6 4.1449 -1.0980 1.3940 25 1 -0.4851 0.8401 0.0004 26 1 3.9417 -0.5114 -0.7341 27 1 4.5593 -2.8822 -0.9652 28 1 3.4928 -3.3621 0.4230 29 1 5.6273 -4.0388 1.5509 30 1 4.5544 -3.1505 2.6591 31 1 8.1983 -3.8223 1.9688 32 1 4.6237 -0.8760 4.1164 33 1 5.2273 0.6672 5.9128 34 1 7.5475 0.8013 6.7137 35 1 3.4980 -1.4654 2.1907 36 1 4.5681 -0.1175 1.6122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138830650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = 67.052673 kcal Electronic energy + Delta-G solvation = -20192.312527 eV Core-core repulsion = 17088.825826 eV Total energy + Delta-G solvation = -3103.486701 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.30872 -40.58225 -38.23620 -37.27406 -34.87886 -33.68964 -31.42251 -30.37566 -29.70385 -27.16771 -26.61528 -23.99951 -23.73549 -22.91466 -20.45361 -20.35324 -19.19604 -18.77779 -17.45672 -16.86042 -16.63016 -16.24040 -15.77716 -15.66327 -15.27132 -15.13575 -15.10038 -14.61901 -14.03792 -13.67142 -13.45434 -13.37105 -13.11563 -12.93392 -12.72258 -12.29489 -12.28272 -12.08009 -11.86786 -11.66930 -11.62565 -11.43664 -11.04924 -10.61644 -10.38853 -9.66426 -9.27183 -8.59414 -8.27257 -6.31296 -0.02815 0.54027 1.07797 1.38226 1.41241 1.53930 1.64669 2.14510 2.39184 2.76585 3.06810 3.48129 3.71978 3.89155 3.94445 4.09131 4.17075 4.33069 4.35602 4.40625 4.58966 4.61986 4.72590 4.80293 4.81214 4.88985 4.95929 4.98695 5.09741 5.29086 5.50480 5.51762 5.54000 5.63467 5.67435 5.77261 6.04460 6.32524 6.36568 6.61485 6.74521 7.35643 8.88792 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.004291 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.890032 B = 6523.654833 C = 7343.279170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.019 3.981 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.511 4.511 8 H 0.037 0.963 9 C -0.018 4.018 10 C 0.017 3.983 11 N -0.470 5.470 12 C 0.094 3.906 13 C -0.179 4.179 14 C 0.084 3.916 15 N -0.580 5.580 16 H 0.430 0.570 17 C 0.087 3.913 18 C -0.106 4.106 19 C -0.083 4.083 20 C -0.139 4.139 21 C -0.092 4.092 22 C -0.054 4.054 23 Cl -0.070 7.070 24 C 0.009 3.991 25 H 0.266 0.734 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.038 0.962 31 H 0.208 0.792 32 H 0.115 0.885 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.054 0.946 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.945 -3.756 11.428 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.179 4.179 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.164 1.164 7 C -0.549 4.549 8 H 0.055 0.945 9 C -0.037 4.037 10 C -0.111 4.111 11 N -0.192 5.192 12 C -0.034 4.034 13 C -0.186 4.186 14 C -0.044 4.044 15 N -0.184 5.184 16 H 0.269 0.731 17 C -0.021 4.021 18 C -0.112 4.112 19 C -0.102 4.102 20 C -0.159 4.159 21 C -0.112 4.112 22 C -0.083 4.083 23 Cl -0.041 7.041 24 C -0.120 4.120 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.056 0.944 31 H 0.225 0.775 32 H 0.133 0.867 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.072 0.928 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.774 -3.518 11.259 24.763 hybrid contribution -0.639 0.413 0.367 0.845 sum 21.134 -3.105 11.625 24.320 Atomic orbital electron populations 1.70047 1.08239 1.28084 1.52419 1.25820 0.95271 1.02927 0.93848 0.85887 0.80047 0.78885 0.79063 1.19666 1.21384 1.16394 1.21160 0.90689 0.93016 1.50072 0.94518 1.20524 0.93434 0.95617 0.94142 1.23672 0.92595 0.97247 0.97615 1.68870 1.29572 1.09908 1.10860 1.20896 0.94154 0.96117 0.92244 1.20149 0.95670 1.02371 1.00411 1.22094 0.88748 0.99088 0.94424 1.41687 1.11124 1.34338 1.31224 0.73066 1.17926 0.91703 0.96088 0.96429 1.19310 0.92341 1.00353 0.99173 1.20623 0.98773 0.95019 0.95770 1.20846 0.96582 1.00308 0.98147 1.21024 0.91343 0.98520 1.00290 1.19960 0.86989 1.02189 0.99209 1.98341 1.19618 1.97693 1.88432 1.24080 0.92379 0.96555 0.98993 0.92527 0.92817 0.89724 0.92348 0.88517 0.94377 0.77492 0.86660 0.83271 0.82534 0.92820 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 2 C 0.02 1.09 5.47 84.66 0.46 1.55 16 3 Si 0.94 44.05 27.14 68.60 1.86 45.91 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.24 -10.61 5.68 99.48 0.56 -10.04 16 7 C -0.51 -28.61 9.38 25.60 0.24 -28.37 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 9 C -0.02 -0.82 2.95 -11.20 -0.03 -0.85 16 10 C 0.02 0.66 7.24 83.57 0.61 1.27 16 11 N -0.47 -16.82 6.32 -932.51 -5.89 -22.71 16 12 C 0.09 2.80 5.34 85.56 0.46 3.26 16 13 C -0.18 -4.92 5.90 -18.63 -0.11 -5.03 16 14 C 0.08 1.70 11.73 83.00 0.97 2.68 16 15 N -0.58 -11.41 6.07 -187.55 -1.14 -12.54 16 16 H 0.43 5.86 8.96 -92.71 -0.83 5.03 16 17 C 0.09 2.21 7.07 39.04 0.28 2.48 16 18 C -0.11 -3.12 6.35 -20.20 -0.13 -3.25 16 19 C -0.08 -2.43 10.05 22.23 0.22 -2.21 16 20 C -0.14 -3.36 9.97 22.03 0.22 -3.14 16 21 C -0.09 -2.01 9.80 22.32 0.22 -1.79 16 22 C -0.05 -1.25 6.33 22.42 0.14 -1.11 16 23 Cl -0.07 -1.32 28.97 -2.72 -0.08 -1.40 16 24 C 0.01 0.39 6.20 83.57 0.52 0.90 16 25 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.05 2.49 7.04 -2.39 -0.02 2.47 16 27 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.06 2.24 7.87 -2.39 -0.02 2.22 16 29 H 0.10 2.37 8.08 -2.39 -0.02 2.36 16 30 H 0.04 1.23 7.30 -2.39 -0.02 1.21 16 31 H 0.21 2.56 8.06 -2.91 -0.02 2.53 16 32 H 0.12 3.60 7.26 -2.91 -0.02 3.58 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.05 2.31 7.10 -2.38 -0.02 2.29 16 36 H 0.06 2.37 7.11 -2.39 -0.02 2.35 16 Total: -1.00 -67.11 315.55 -0.74 -67.85 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.14 Total: 14.76 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 4.07 Total: -33.60 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -6.73 Total: -93.52 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.86 Total: 45.91 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -67.11 -0.74 -67.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138830650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.902 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds