Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48496 * 109.47478 * 269.99973 * 3 2 1 5 5 H 1.48504 * 109.47024 * 30.00365 * 3 2 1 6 6 H 1.48500 * 109.46951 * 150.00171 * 3 2 1 7 7 C 1.37882 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99983 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99853 * 180.02562 * 7 2 1 10 10 C 1.53515 * 114.17190 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93199 * 220.13928 * 10 9 7 12 12 C 1.46897 * 110.99995 * 138.70269 * 11 10 9 13 13 C 1.50696 * 109.47136 * 170.30571 * 12 11 10 14 14 C 1.34231 * 126.50688 * 103.22396 * 13 12 11 15 15 N 1.36844 * 109.92394 * 180.02562 * 14 13 12 16 16 H 0.97002 * 125.06251 * 179.97438 * 15 14 13 17 17 C 1.37707 * 109.87775 * 359.97438 * 15 14 13 18 18 C 1.39135 * 133.42341 * 180.02562 * 17 15 14 19 19 C 1.37712 * 119.94306 * 179.97438 * 18 17 15 20 20 C 1.38844 * 120.68724 * 0.02562 * 19 18 17 21 21 C 1.37722 * 120.36529 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.18208 * 179.97438 * 21 20 19 23 23 C 1.39731 * 119.62856 * 0.02562 * 21 20 19 24 24 C 1.47480 * 87.83728 * 27.00723 * 11 10 9 25 25 H 0.97003 * 120.00296 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.25941 * 312.94774 * 9 7 2 27 27 H 1.09000 * 113.47760 * 105.36762 * 10 9 7 28 28 H 1.09007 * 113.52697 * 334.91165 * 10 9 7 29 29 H 1.08995 * 109.47249 * 50.30559 * 12 11 10 30 30 H 1.09007 * 109.47164 * 290.30233 * 12 11 10 31 31 H 1.08008 * 125.03759 * 359.97033 * 14 13 12 32 32 H 1.08004 * 120.02517 * 359.97438 * 18 17 15 33 33 H 1.08005 * 119.65859 * 180.02562 * 19 18 17 34 34 H 1.07998 * 119.81459 * 179.71693 * 20 19 18 35 35 H 1.09003 * 113.47510 * 87.75963 * 24 11 10 36 36 H 1.08996 * 113.47829 * 218.21991 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.1400 -2.5947 0.0000 11 7 5.1458 -2.0851 0.9506 12 6 5.4197 -3.0699 2.0055 13 6 6.6106 -2.6226 2.8134 14 6 6.5835 -2.0661 4.0346 15 7 7.8581 -1.7918 4.4504 16 1 8.0920 -1.3874 5.3005 17 6 8.7592 -2.1755 3.4824 18 6 10.1468 -2.1252 3.3935 19 6 10.7811 -2.5994 2.2669 20 6 10.0500 -3.1295 1.2123 21 6 8.6757 -3.1893 1.2785 22 17 7.7663 -3.8525 -0.0432 23 6 8.0174 -2.7122 2.4149 24 6 4.1437 -1.0987 1.3956 25 1 -0.4851 0.8400 0.0004 26 1 3.9422 -0.5114 -0.7323 27 1 4.5599 -2.8822 -0.9639 28 1 3.4922 -3.3624 0.4233 29 1 5.6313 -4.0384 1.5524 30 1 4.5501 -3.1558 2.6572 31 1 5.6884 -1.8639 4.6043 32 1 10.7259 -1.7146 4.2075 33 1 11.8585 -2.5585 2.2030 34 1 10.5617 -3.4932 0.3335 35 1 3.4963 -1.4664 2.1918 36 1 4.5668 -0.1184 1.6146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140434079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = 89.312517 kcal Electronic energy + Delta-G solvation = -20285.446080 eV Core-core repulsion = 17182.924638 eV Total energy + Delta-G solvation = -3102.521442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29549 -38.92810 -37.19466 -35.96870 -33.08075 -32.17047 -30.14708 -29.43447 -28.22808 -25.50943 -24.89267 -22.91580 -22.19108 -21.95724 -19.39310 -18.52198 -17.89026 -16.92264 -16.47060 -15.68808 -15.12995 -14.69075 -14.49765 -14.38105 -14.27157 -13.77536 -13.35457 -13.01895 -12.54291 -12.51510 -12.45900 -11.92717 -11.68582 -11.33617 -11.27469 -11.01576 -10.93612 -10.58584 -10.11353 -9.92808 -9.90418 -9.62722 -9.18038 -9.06175 -8.51275 -8.32650 -7.99131 -7.56016 -6.07302 -4.06862 0.95186 1.48277 2.38792 2.68097 3.06432 3.32437 3.40472 3.46955 3.72781 4.45619 4.68134 4.77838 4.93098 4.99581 5.13595 5.20850 5.26898 5.43954 5.55436 5.62006 5.77508 5.90419 5.98234 6.09617 6.23244 6.31706 6.35979 6.41695 6.53424 6.55083 6.62900 6.71534 6.84803 6.99759 7.17370 7.43583 7.46121 7.74369 8.00704 8.53284 8.96413 9.56510 11.05346 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.004574 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.690552 B = 6119.653345 C = 6627.835955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.508 4.508 8 H 0.073 0.927 9 C -0.001 4.001 10 C 0.012 3.988 11 N -0.467 5.467 12 C 0.088 3.912 13 C -0.131 4.131 14 C 0.049 3.951 15 N -0.595 5.595 16 H 0.416 0.584 17 C 0.105 3.895 18 C -0.133 4.133 19 C -0.092 4.092 20 C -0.149 4.149 21 C 0.026 3.974 22 Cl -0.055 7.055 23 C -0.087 4.087 24 C -0.009 4.009 25 H 0.263 0.737 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.171 0.829 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.062 0.938 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.369 -5.548 8.779 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.546 4.546 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.117 4.117 11 N -0.189 5.189 12 C -0.041 4.041 13 C -0.138 4.138 14 C -0.077 4.077 15 N -0.198 5.198 16 H 0.252 0.748 17 C -0.003 4.003 18 C -0.154 4.154 19 C -0.111 4.111 20 C -0.169 4.169 21 C -0.001 4.001 22 Cl -0.026 7.026 23 C -0.093 4.093 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.188 0.812 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.773 -5.256 8.571 23.079 hybrid contribution -0.371 0.821 0.785 1.195 sum 20.403 -4.436 9.356 22.880 Atomic orbital electron populations 1.69913 1.06411 1.27012 1.50542 1.24998 0.94597 0.99173 0.94067 0.86886 0.80776 0.83433 0.78706 1.20336 1.21656 1.18101 1.20946 0.88380 0.94431 1.50866 0.90848 1.20496 0.96004 0.92956 0.92564 1.23740 0.92466 0.99189 0.96312 1.68898 1.30808 1.09344 1.09875 1.20992 0.92943 0.96661 0.93461 1.20198 0.92412 1.06563 0.94663 1.21680 0.86870 1.02202 0.96969 1.41667 1.04957 1.55569 1.17605 0.74769 1.18101 0.91131 1.01184 0.89870 1.20009 0.90200 1.05351 0.99859 1.20653 0.99475 0.98532 0.92490 1.20767 0.91478 1.04308 1.00335 1.20343 0.91430 0.99335 0.89028 1.98383 1.74735 1.83546 1.45940 1.18748 0.93431 1.03693 0.93414 1.24385 0.92389 0.96045 1.00978 0.92687 0.92758 0.91824 0.92314 0.90629 0.93400 0.81178 0.86077 0.85178 0.85209 0.92028 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 21.49 27.14 -169.99 -4.61 16.88 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.05 5.68 56.52 0.32 -5.73 16 7 C -0.51 -14.10 9.38 -34.44 -0.32 -14.42 16 8 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 9 C 0.00 -0.02 2.95 -91.24 -0.27 -0.29 16 10 C 0.01 0.24 7.25 -7.54 -0.05 0.18 16 11 N -0.47 -9.05 6.32 -246.08 -1.55 -10.61 16 12 C 0.09 1.47 4.50 -4.98 -0.02 1.45 16 13 C -0.13 -2.01 5.90 -102.71 -0.61 -2.62 16 14 C 0.05 0.61 11.73 -16.73 -0.20 0.41 16 15 N -0.59 -6.41 6.07 -10.65 -0.06 -6.48 16 16 H 0.42 2.97 8.96 -40.82 -0.37 2.60 16 17 C 0.11 1.34 7.27 -83.99 -0.61 0.73 16 18 C -0.13 -1.40 10.07 -39.44 -0.40 -1.79 16 19 C -0.09 -0.93 10.01 -39.55 -0.40 -1.33 16 20 C -0.15 -1.77 9.81 -39.55 -0.39 -2.16 16 21 C 0.03 0.38 6.35 -39.21 -0.25 0.13 16 22 Cl -0.06 -0.83 27.14 -51.86 -1.41 -2.24 16 23 C -0.09 -1.32 6.21 -105.11 -0.65 -1.97 16 24 C -0.01 -0.19 6.70 -7.54 -0.05 -0.24 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 26 H 0.05 1.33 7.04 -51.93 -0.37 0.96 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.20 7.87 -51.92 -0.41 0.79 16 29 H 0.08 1.24 7.10 -51.93 -0.37 0.87 16 30 H 0.05 0.77 7.30 -51.93 -0.38 0.39 16 31 H 0.17 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 33 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.06 1.31 7.38 -51.93 -0.38 0.92 16 36 H 0.06 1.30 7.11 -51.93 -0.37 0.93 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -31.74 313.61 -10.85 -42.59 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.39 Total: 1.59 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -4.31 Total: -19.91 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.85 Total: -43.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.61 Total: 16.88 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.41 Total: -2.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.74 -10.85 -42.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140434079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.898 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds