Wall clock time and date at job start Tue Mar 31 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48496 * 109.47478 * 269.99973 * 3 2 1 5 5 H 1.48504 * 109.47024 * 30.00365 * 3 2 1 6 6 H 1.48500 * 109.46951 * 150.00171 * 3 2 1 7 7 C 1.37882 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99983 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99853 * 180.02562 * 7 2 1 10 10 C 1.53515 * 114.17190 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93199 * 220.13928 * 10 9 7 12 12 C 1.46897 * 110.99995 * 138.70269 * 11 10 9 13 13 C 1.50696 * 109.47136 * 170.30571 * 12 11 10 14 14 C 1.34231 * 126.50688 * 103.22396 * 13 12 11 15 15 N 1.36844 * 109.92394 * 180.02562 * 14 13 12 16 16 H 0.97002 * 125.06251 * 179.97438 * 15 14 13 17 17 C 1.37707 * 109.87775 * 359.97438 * 15 14 13 18 18 C 1.39135 * 133.42341 * 180.02562 * 17 15 14 19 19 C 1.37712 * 119.94306 * 179.97438 * 18 17 15 20 20 C 1.38844 * 120.68724 * 0.02562 * 19 18 17 21 21 C 1.37722 * 120.36529 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.18208 * 179.97438 * 21 20 19 23 23 C 1.39731 * 119.62856 * 0.02562 * 21 20 19 24 24 C 1.47480 * 87.83728 * 27.00723 * 11 10 9 25 25 H 0.97003 * 120.00296 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.25941 * 312.94774 * 9 7 2 27 27 H 1.09000 * 113.47760 * 105.36762 * 10 9 7 28 28 H 1.09007 * 113.52697 * 334.91165 * 10 9 7 29 29 H 1.08995 * 109.47249 * 50.30559 * 12 11 10 30 30 H 1.09007 * 109.47164 * 290.30233 * 12 11 10 31 31 H 1.08008 * 125.03759 * 359.97033 * 14 13 12 32 32 H 1.08004 * 120.02517 * 359.97438 * 18 17 15 33 33 H 1.08005 * 119.65859 * 180.02562 * 19 18 17 34 34 H 1.07998 * 119.81459 * 179.71693 * 20 19 18 35 35 H 1.09003 * 113.47510 * 87.75963 * 24 11 10 36 36 H 1.08996 * 113.47829 * 218.21991 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.1400 -2.5947 0.0000 11 7 5.1458 -2.0851 0.9506 12 6 5.4197 -3.0699 2.0055 13 6 6.6106 -2.6226 2.8134 14 6 6.5835 -2.0661 4.0346 15 7 7.8581 -1.7918 4.4504 16 1 8.0920 -1.3874 5.3005 17 6 8.7592 -2.1755 3.4824 18 6 10.1468 -2.1252 3.3935 19 6 10.7811 -2.5994 2.2669 20 6 10.0500 -3.1295 1.2123 21 6 8.6757 -3.1893 1.2785 22 17 7.7663 -3.8525 -0.0432 23 6 8.0174 -2.7122 2.4149 24 6 4.1437 -1.0987 1.3956 25 1 -0.4851 0.8400 0.0004 26 1 3.9422 -0.5114 -0.7323 27 1 4.5599 -2.8822 -0.9639 28 1 3.4922 -3.3624 0.4233 29 1 5.6313 -4.0384 1.5524 30 1 4.5501 -3.1558 2.6572 31 1 5.6884 -1.8639 4.6043 32 1 10.7259 -1.7146 4.2075 33 1 11.8585 -2.5585 2.2030 34 1 10.5617 -3.4932 0.3335 35 1 3.4963 -1.4664 2.1918 36 1 4.5668 -0.1184 1.6146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140434079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:49 Heat of formation + Delta-G solvation = 68.265887 kcal Electronic energy + Delta-G solvation = -20286.358730 eV Core-core repulsion = 17182.924638 eV Total energy + Delta-G solvation = -3103.434092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22407 -40.57626 -38.11306 -36.95733 -34.86799 -33.67142 -31.37487 -30.33934 -29.59030 -27.15384 -26.59874 -23.90962 -23.71107 -22.86589 -20.50731 -20.29086 -19.11537 -18.71021 -17.38195 -16.79706 -16.54446 -16.31689 -15.76567 -15.35476 -15.25051 -15.16939 -15.06522 -14.59161 -14.15288 -13.52317 -13.48693 -13.38244 -12.98557 -12.96767 -12.76934 -12.19726 -12.07912 -11.95801 -11.81968 -11.60248 -11.43402 -11.42353 -11.05455 -10.62545 -10.30867 -9.60661 -9.22100 -8.51584 -8.27716 -6.31869 0.05146 0.59906 1.38174 1.39934 1.40258 1.53585 1.67836 2.23220 2.38951 2.82410 3.06260 3.46911 3.78139 3.93836 4.08411 4.14447 4.18620 4.32504 4.39349 4.42597 4.62309 4.65853 4.71703 4.80672 4.84657 4.87723 4.95279 5.04712 5.10035 5.43139 5.47897 5.51553 5.52282 5.65806 5.68219 5.74735 6.11210 6.32415 6.40429 6.71512 6.73573 7.34852 8.88456 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.004574 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.690552 B = 6119.653345 C = 6627.835955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.019 3.981 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.239 1.239 7 C -0.511 4.511 8 H 0.035 0.965 9 C -0.014 4.014 10 C 0.021 3.979 11 N -0.460 5.460 12 C 0.095 3.905 13 C -0.175 4.175 14 C 0.066 3.934 15 N -0.579 5.579 16 H 0.434 0.566 17 C 0.092 3.908 18 C -0.125 4.125 19 C -0.091 4.091 20 C -0.148 4.148 21 C -0.006 4.006 22 Cl -0.077 7.077 23 C -0.116 4.116 24 C 0.006 3.994 25 H 0.266 0.734 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.194 0.806 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.144 0.856 35 H 0.060 0.940 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.689 -4.404 10.535 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.179 4.179 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.162 1.162 7 C -0.549 4.549 8 H 0.053 0.947 9 C -0.034 4.034 10 C -0.108 4.108 11 N -0.182 5.182 12 C -0.033 4.033 13 C -0.182 4.182 14 C -0.062 4.062 15 N -0.184 5.184 16 H 0.275 0.725 17 C -0.016 4.016 18 C -0.146 4.146 19 C -0.110 4.110 20 C -0.168 4.168 21 C -0.033 4.033 22 Cl -0.048 7.048 23 C -0.122 4.122 24 C -0.124 4.124 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.211 0.789 32 H 0.173 0.827 33 H 0.184 0.816 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.135 -4.121 10.352 26.582 hybrid contribution -1.337 0.366 0.278 1.414 sum 22.797 -3.755 10.630 25.433 Atomic orbital electron populations 1.70051 1.08268 1.28108 1.52435 1.25831 0.95290 1.02982 0.93793 0.85842 0.80055 0.78682 0.78991 1.19940 1.21263 1.16185 1.21140 0.90600 0.92995 1.50143 0.94716 1.20478 0.93410 0.95140 0.94350 1.23583 0.92594 0.97395 0.97259 1.68886 1.29216 1.09657 1.10464 1.20876 0.93983 0.95707 0.92772 1.20116 0.92128 1.09837 0.96152 1.21983 0.88200 0.99933 0.96079 1.41638 1.04066 1.54667 1.18016 0.72540 1.18398 0.92120 1.01430 0.89659 1.20465 0.89438 1.03917 1.00753 1.21111 1.01198 0.97151 0.91511 1.21101 0.90687 1.03531 1.01469 1.20597 0.92357 1.01380 0.88938 1.98362 1.75437 1.84028 1.46940 1.19012 0.93749 1.04865 0.94563 1.24123 0.92477 0.96775 0.98997 0.92511 0.93042 0.91192 0.92710 0.90986 0.93231 0.78947 0.82665 0.81567 0.83859 0.92224 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 2 C 0.02 1.07 5.47 84.66 0.46 1.54 16 3 Si 0.94 44.33 27.14 68.60 1.86 46.19 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.24 -10.45 5.68 99.48 0.56 -9.89 16 7 C -0.51 -29.08 9.38 25.60 0.24 -28.84 16 8 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 9 C -0.01 -0.68 2.95 -11.19 -0.03 -0.72 16 10 C 0.02 0.85 7.25 83.58 0.61 1.46 16 11 N -0.46 -17.60 6.32 -932.46 -5.89 -23.49 16 12 C 0.10 3.13 4.50 85.56 0.38 3.52 16 13 C -0.18 -5.15 5.90 -18.63 -0.11 -5.26 16 14 C 0.07 1.49 11.73 83.00 0.97 2.46 16 15 N -0.58 -10.63 6.07 -187.61 -1.14 -11.76 16 16 H 0.43 4.52 8.96 -92.71 -0.83 3.69 16 17 C 0.09 2.08 7.27 39.02 0.28 2.36 16 18 C -0.13 -2.12 10.07 22.36 0.23 -1.89 16 19 C -0.09 -1.49 10.01 22.29 0.22 -1.26 16 20 C -0.15 -3.21 9.81 22.29 0.22 -2.99 16 21 C -0.01 -0.16 6.35 22.51 0.14 -0.01 16 22 Cl -0.08 -2.31 27.14 -2.72 -0.07 -2.38 16 23 C -0.12 -3.35 6.21 -20.18 -0.13 -3.48 16 24 C 0.01 0.23 6.70 83.58 0.56 0.79 16 25 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 26 H 0.05 2.48 7.04 -2.39 -0.02 2.46 16 27 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.05 2.29 7.87 -2.38 -0.02 2.27 16 29 H 0.07 2.39 7.10 -2.39 -0.02 2.37 16 30 H 0.05 1.58 7.30 -2.38 -0.02 1.57 16 31 H 0.19 3.34 8.06 -2.91 -0.02 3.31 16 32 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.06 2.50 7.38 -2.39 -0.02 2.48 16 36 H 0.06 2.53 7.11 -2.39 -0.02 2.52 16 Total: -1.00 -70.33 313.61 -0.75 -71.08 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.14 Total: 11.41 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 4.05 Total: -32.32 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -6.73 Total: -93.98 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.86 Total: 46.19 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.07 Total: -2.38 kcal Total: -70.33 -0.75 -71.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140434079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.350 kcal (2) G-P(sol) polarization free energy of solvation -70.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds