Wall clock time and date at job start Tue Mar 31 2020 08:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99929 * 2 1 4 4 C 1.50693 * 109.47434 * 66.04738 * 3 2 1 5 5 H 1.08000 * 120.00071 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00153 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00007 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00228 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47088 * 89.99753 * 8 6 4 10 10 H 1.48504 * 109.47155 * 210.00309 * 8 6 4 11 11 H 1.48500 * 109.46850 * 330.00253 * 8 6 4 12 12 C 1.46901 * 110.99690 * 236.04636 * 2 1 3 13 13 C 1.50703 * 109.47240 * 293.95417 * 12 2 1 14 14 C 1.36350 * 120.66891 * 89.99804 * 13 12 2 15 15 Cl 1.73603 * 119.08479 * 359.96137 * 14 13 12 16 16 N 1.32659 * 121.84105 * 179.97438 * 14 13 12 17 17 C 1.31275 * 122.75834 * 0.02562 * 16 14 13 18 18 C 1.40375 * 119.90610 * 359.97438 * 17 16 14 19 19 C 1.40387 * 122.07491 * 179.72617 * 18 17 16 20 20 C 1.36161 * 119.52000 * 179.75725 * 19 18 17 21 21 C 1.39386 * 121.09778 * 0.55337 * 20 19 18 22 22 C 1.36203 * 121.02241 * 359.69629 * 21 20 19 23 23 C 1.40262 * 119.48165 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47260 * 183.95432 * 1 2 3 25 25 H 1.09002 * 109.46804 * 303.95684 * 1 2 3 26 26 H 1.09003 * 109.47509 * 63.95078 * 1 2 3 27 27 H 1.09002 * 109.47277 * 186.04788 * 3 2 1 28 28 H 1.09000 * 109.47227 * 306.04540 * 3 2 1 29 29 H 0.97005 * 120.00261 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47033 * 173.95582 * 12 2 1 31 31 H 1.09002 * 109.47003 * 53.95198 * 12 2 1 32 32 H 1.07998 * 120.05084 * 179.97438 * 17 16 14 33 33 H 1.07999 * 120.23771 * 0.02594 * 19 18 17 34 34 H 1.08004 * 119.45472 * 180.26945 * 20 19 18 35 35 H 1.08002 * 119.49414 * 179.71051 * 21 20 19 36 36 H 1.08002 * 120.26396 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0484 6 6 2.0268 3.3495 1.5284 7 7 1.7144 3.9390 2.6617 8 14 3.0000 4.2762 0.2308 9 1 2.0633 4.9797 -0.6818 10 1 3.8863 5.2679 0.8912 11 1 3.8239 3.3175 -0.5485 12 6 1.9954 -0.7660 -1.1376 13 6 1.6368 -2.2205 -0.9729 14 6 0.4707 -2.7112 -1.4813 15 17 -0.6012 -1.6362 -2.3234 16 7 0.1323 -3.9872 -1.3503 17 6 0.8873 -4.8620 -0.7275 18 6 2.1095 -4.4585 -0.1673 19 6 2.9495 -5.3542 0.5132 20 6 4.1265 -4.9077 1.0322 21 6 4.5070 -3.5724 0.9093 22 6 3.7154 -2.6738 0.2605 23 6 2.4982 -3.0987 -0.2921 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 -0.3634 0.4513 -0.9233 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8309 29 1 1.9890 4.8552 2.8237 30 1 3.0796 -0.6612 -1.1757 31 1 1.5610 -0.3872 -2.0628 32 1 0.5686 -5.8907 -0.6461 33 1 2.6662 -6.3909 0.6205 34 1 4.7739 -5.5987 1.5517 35 1 5.4441 -3.2452 1.3350 36 1 4.0220 -1.6420 0.1728 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140720415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:29 Heat of formation + Delta-G solvation = 60.099559 kcal Electronic energy + Delta-G solvation = -20471.983840 eV Core-core repulsion = 17368.195629 eV Total energy + Delta-G solvation = -3103.788211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.02820 -37.77612 -36.88066 -36.22181 -33.47502 -32.25097 -31.23395 -29.90280 -27.89505 -26.96003 -24.57269 -23.56120 -23.31738 -21.24420 -20.06285 -18.17105 -17.78804 -16.95096 -16.46775 -15.33559 -15.17851 -14.75500 -14.52890 -14.31980 -13.94663 -13.81301 -13.59551 -13.04598 -12.69561 -12.56025 -12.26805 -11.98487 -11.87661 -11.49823 -11.27646 -11.15592 -11.04599 -10.76449 -10.59962 -10.31814 -9.93523 -9.83803 -9.58821 -9.31224 -9.08800 -8.60164 -8.04629 -7.41650 -6.07151 -4.04790 0.25335 0.75901 1.82818 1.95872 2.90095 3.26108 3.33944 3.34546 3.92686 4.28203 4.39389 4.56298 4.62702 4.67176 4.80181 4.95475 5.07128 5.12120 5.24686 5.33555 5.40574 5.64776 5.76133 5.88152 5.94753 5.94879 6.11802 6.26451 6.31235 6.42582 6.46439 6.68814 6.74942 6.83017 6.94615 7.53212 7.68162 7.82350 7.95798 8.62007 9.01823 9.53925 11.05903 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.005404 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.744383 B = 5179.830085 C = 6344.660269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.874 3.126 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.082 3.918 13 C -0.068 4.068 14 C 0.146 3.854 15 Cl -0.033 7.033 16 N -0.481 5.481 17 C 0.152 3.848 18 C -0.111 4.111 19 C -0.095 4.095 20 C -0.113 4.113 21 C -0.104 4.104 22 C -0.086 4.086 23 C -0.004 4.004 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.019 0.981 27 H 0.028 0.972 28 H -0.014 1.014 29 H 0.264 0.736 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.169 0.831 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 -18.525 -7.522 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.701 3.299 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.046 4.046 13 C -0.072 4.072 14 C -0.005 4.005 15 Cl -0.005 7.005 16 N -0.190 5.190 17 C -0.020 4.020 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.104 4.104 23 C -0.010 4.010 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.004 0.996 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.186 0.814 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.774 -18.569 -7.485 20.212 hybrid contribution 0.808 1.377 -0.999 1.884 sum 3.582 -17.192 -8.485 19.503 Atomic orbital electron populations 1.22481 0.87830 1.00081 1.01083 1.62071 1.07904 1.16319 1.38054 1.20223 0.95137 0.83687 0.97323 1.20995 1.35633 0.97197 1.00826 0.90083 1.24883 0.95760 0.97295 0.95291 1.69892 1.46818 1.13243 1.23872 0.86884 0.80659 0.80126 0.82189 1.20316 1.21131 1.19196 1.21107 1.00966 0.87910 0.94641 1.20341 0.92985 0.97453 0.96410 1.20826 0.90851 0.89593 0.99243 1.98391 1.65242 1.60744 1.76105 1.66662 1.34337 1.01690 1.16270 1.22962 0.88929 0.98326 0.91761 1.19045 0.97117 0.93958 1.01191 1.20881 0.94148 0.99056 0.97374 1.20952 0.96723 0.96022 0.99379 1.21033 1.00028 0.93175 0.98066 1.21152 0.92473 1.00664 0.96116 1.17911 0.94907 0.91834 0.96348 0.93508 0.90260 0.96248 0.95356 0.99598 0.92638 0.89792 0.93399 0.81396 0.84987 0.85615 0.85331 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 7.81 60.07 0.47 1.15 16 2 N -0.52 -10.85 4.74 -245.83 -1.17 -12.02 16 3 C 0.16 3.86 3.79 -4.98 -0.02 3.84 16 4 C -0.51 -14.27 9.01 -34.44 -0.31 -14.58 16 5 H 0.08 2.50 7.37 -52.49 -0.39 2.11 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 8 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 12 C 0.08 1.42 4.48 -4.97 -0.02 1.40 16 13 C -0.07 -1.10 4.91 -104.41 -0.51 -1.61 16 14 C 0.15 2.34 6.17 -17.87 -0.11 2.23 16 15 Cl -0.03 -0.52 23.99 -51.86 -1.24 -1.77 16 16 N -0.48 -7.18 10.27 -10.27 -0.11 -7.28 16 17 C 0.15 1.82 11.05 -16.99 -0.19 1.63 16 18 C -0.11 -1.38 5.74 -106.85 -0.61 -1.99 16 19 C -0.09 -0.90 9.81 -39.52 -0.39 -1.29 16 20 C -0.11 -1.05 9.94 -39.90 -0.40 -1.45 16 21 C -0.10 -1.13 9.95 -39.89 -0.40 -1.52 16 22 C -0.09 -1.16 9.33 -39.55 -0.37 -1.53 16 23 C 0.00 -0.07 5.75 -106.81 -0.61 -0.68 16 24 H 0.05 0.89 5.62 -51.93 -0.29 0.60 16 25 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 26 H 0.02 0.37 7.07 -51.93 -0.37 0.01 16 27 H 0.03 0.67 6.99 -51.93 -0.36 0.30 16 28 H -0.01 -0.33 7.55 -51.93 -0.39 -0.72 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.08 1.34 6.35 -51.93 -0.33 1.01 16 31 H 0.05 0.82 6.84 -51.93 -0.35 0.46 16 32 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 1.96 6.53 -52.49 -0.34 1.62 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -31.76 306.00 -9.40 -41.16 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.04 Total: -2.15 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.57 Total: -12.51 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.50 Total: -45.88 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.24 Total: -1.77 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.76 -9.40 -41.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140720415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.263 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds