Wall clock time and date at job start Tue Mar 31 2020 08:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99929 * 2 1 4 4 C 1.50693 * 109.47434 * 66.04738 * 3 2 1 5 5 H 1.08000 * 120.00071 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00153 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00007 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00228 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47088 * 89.99753 * 8 6 4 10 10 H 1.48504 * 109.47155 * 210.00309 * 8 6 4 11 11 H 1.48500 * 109.46850 * 330.00253 * 8 6 4 12 12 C 1.46901 * 110.99690 * 236.04636 * 2 1 3 13 13 C 1.50703 * 109.47240 * 293.95417 * 12 2 1 14 14 C 1.36350 * 120.66891 * 89.99804 * 13 12 2 15 15 Cl 1.73603 * 119.08479 * 359.96137 * 14 13 12 16 16 N 1.32659 * 121.84105 * 179.97438 * 14 13 12 17 17 C 1.31275 * 122.75834 * 0.02562 * 16 14 13 18 18 C 1.40375 * 119.90610 * 359.97438 * 17 16 14 19 19 C 1.40387 * 122.07491 * 179.72617 * 18 17 16 20 20 C 1.36161 * 119.52000 * 179.75725 * 19 18 17 21 21 C 1.39386 * 121.09778 * 0.55337 * 20 19 18 22 22 C 1.36203 * 121.02241 * 359.69629 * 21 20 19 23 23 C 1.40262 * 119.48165 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47260 * 183.95432 * 1 2 3 25 25 H 1.09002 * 109.46804 * 303.95684 * 1 2 3 26 26 H 1.09003 * 109.47509 * 63.95078 * 1 2 3 27 27 H 1.09002 * 109.47277 * 186.04788 * 3 2 1 28 28 H 1.09000 * 109.47227 * 306.04540 * 3 2 1 29 29 H 0.97005 * 120.00261 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47033 * 173.95582 * 12 2 1 31 31 H 1.09002 * 109.47003 * 53.95198 * 12 2 1 32 32 H 1.07998 * 120.05084 * 179.97438 * 17 16 14 33 33 H 1.07999 * 120.23771 * 0.02594 * 19 18 17 34 34 H 1.08004 * 119.45472 * 180.26945 * 20 19 18 35 35 H 1.08002 * 119.49414 * 179.71051 * 21 20 19 36 36 H 1.08002 * 120.26396 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0484 6 6 2.0268 3.3495 1.5284 7 7 1.7144 3.9390 2.6617 8 14 3.0000 4.2762 0.2308 9 1 2.0633 4.9797 -0.6818 10 1 3.8863 5.2679 0.8912 11 1 3.8239 3.3175 -0.5485 12 6 1.9954 -0.7660 -1.1376 13 6 1.6368 -2.2205 -0.9729 14 6 0.4707 -2.7112 -1.4813 15 17 -0.6012 -1.6362 -2.3234 16 7 0.1323 -3.9872 -1.3503 17 6 0.8873 -4.8620 -0.7275 18 6 2.1095 -4.4585 -0.1673 19 6 2.9495 -5.3542 0.5132 20 6 4.1265 -4.9077 1.0322 21 6 4.5070 -3.5724 0.9093 22 6 3.7154 -2.6738 0.2605 23 6 2.4982 -3.0987 -0.2921 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 -0.3634 0.4513 -0.9233 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8309 29 1 1.9890 4.8552 2.8237 30 1 3.0796 -0.6612 -1.1757 31 1 1.5610 -0.3872 -2.0628 32 1 0.5686 -5.8907 -0.6461 33 1 2.6662 -6.3909 0.6205 34 1 4.7739 -5.5987 1.5517 35 1 5.4441 -3.2452 1.3350 36 1 4.0220 -1.6420 0.1728 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140720415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:29 Heat of formation + Delta-G solvation = 39.176605 kcal Electronic energy + Delta-G solvation = -20472.891127 eV Core-core repulsion = 17368.195629 eV Total energy + Delta-G solvation = -3104.695498 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.01642 -38.90445 -38.24663 -37.37569 -35.03248 -33.99458 -32.16296 -30.99843 -29.70578 -28.41151 -25.96869 -24.68404 -24.40936 -22.69221 -21.54822 -19.16822 -18.96859 -18.76654 -17.52195 -16.84894 -16.46055 -16.08961 -15.97900 -15.53364 -15.29320 -15.06647 -14.60571 -14.48502 -14.18560 -13.79684 -13.69099 -13.57186 -13.05009 -12.80966 -12.72103 -12.66255 -12.37919 -12.19500 -12.04249 -11.85810 -11.71616 -11.50139 -10.96231 -10.79213 -10.64117 -10.00966 -9.19854 -8.91306 -8.28502 -6.32274 -0.69995 -0.19579 0.82041 0.90463 1.34887 1.35742 1.46694 1.96615 2.33859 2.94105 3.04713 3.24711 3.40272 3.58724 3.71517 3.78993 3.89210 4.19608 4.22318 4.34028 4.38057 4.40975 4.57595 4.60752 4.75782 4.80134 4.86945 4.97923 5.02467 5.09620 5.11383 5.43980 5.49014 5.52924 5.55907 5.92022 5.93763 6.21688 6.57425 6.67896 6.73355 7.30906 8.88163 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.005404 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.744383 B = 5179.830085 C = 6344.660269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.532 5.532 3 C 0.172 3.828 4 C -0.515 4.515 5 H 0.035 0.965 6 C 0.010 3.990 7 N -0.948 5.948 8 Si 0.946 3.054 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.245 1.245 12 C 0.089 3.911 13 C -0.094 4.094 14 C 0.136 3.864 15 Cl -0.044 7.044 16 N -0.509 5.509 17 C 0.170 3.830 18 C -0.126 4.126 19 C -0.080 4.080 20 C -0.113 4.113 21 C -0.092 4.092 22 C -0.122 4.122 23 C -0.023 4.023 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.025 0.975 27 H 0.038 0.962 28 H -0.012 1.012 29 H 0.267 0.733 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.214 0.786 33 H 0.175 0.825 34 H 0.164 0.836 35 H 0.149 0.851 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -21.294 -8.368 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.255 5.255 3 C 0.046 3.954 4 C -0.553 4.553 5 H 0.054 0.946 6 C -0.187 4.187 7 N -0.588 5.588 8 Si 0.769 3.231 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.168 1.168 12 C -0.039 4.039 13 C -0.097 4.097 14 C -0.014 4.014 15 Cl -0.016 7.016 16 N -0.219 5.219 17 C -0.002 4.002 18 C -0.128 4.128 19 C -0.100 4.100 20 C -0.131 4.131 21 C -0.111 4.111 22 C -0.140 4.140 23 C -0.028 4.028 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.005 0.995 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.231 0.769 33 H 0.193 0.807 34 H 0.181 0.819 35 H 0.166 0.834 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.549 -21.359 -8.346 23.378 hybrid contribution 0.287 2.012 -0.602 2.120 sum 4.836 -19.347 -8.948 21.858 Atomic orbital electron populations 1.22305 0.87843 1.00141 0.99842 1.61923 1.07987 1.14928 1.40709 1.19986 0.95571 0.85084 0.94802 1.21190 1.34923 0.97526 1.01678 0.94622 1.25815 0.96941 0.98285 0.97673 1.70051 1.48551 1.13874 1.26357 0.85743 0.79291 0.78873 0.79221 1.19575 1.20566 1.16821 1.21043 1.01238 0.88598 0.92994 1.20204 0.94071 0.96749 0.98724 1.20881 0.90674 0.90269 0.99553 1.98374 1.65545 1.61321 1.76347 1.66723 1.35432 1.01490 1.18230 1.23778 0.87968 0.99518 0.88935 1.19365 0.97981 0.93501 1.01969 1.21381 0.93165 1.00425 0.95003 1.21405 0.97170 0.95674 0.98864 1.21408 1.00005 0.93740 0.95972 1.21130 0.93401 1.00755 0.98762 1.18136 0.95121 0.92979 0.96551 0.92433 0.93462 0.95615 0.94443 0.99452 0.92407 0.88942 0.93334 0.76940 0.80740 0.81863 0.83372 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.99 7.81 127.69 1.00 2.98 16 2 N -0.53 -22.85 4.74 -931.66 -4.42 -27.27 16 3 C 0.17 8.31 3.79 85.56 0.32 8.63 16 4 C -0.51 -30.04 9.01 25.60 0.23 -29.81 16 5 H 0.04 2.34 7.37 -2.91 -0.02 2.32 16 6 C 0.01 0.60 5.47 84.65 0.46 1.06 16 7 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 8 Si 0.95 43.82 27.47 68.60 1.88 45.70 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 12 C 0.09 3.13 4.48 85.56 0.38 3.52 16 13 C -0.09 -3.04 4.91 -19.73 -0.10 -3.13 16 14 C 0.14 4.36 6.17 84.13 0.52 4.88 16 15 Cl -0.04 -1.41 23.99 -2.72 -0.07 -1.47 16 16 N -0.51 -14.56 10.27 -186.40 -1.91 -16.48 16 17 C 0.17 3.56 11.05 85.30 0.94 4.50 16 18 C -0.13 -2.78 5.74 -21.31 -0.12 -2.90 16 19 C -0.08 -1.15 9.81 22.31 0.22 -0.93 16 20 C -0.11 -1.60 9.94 22.06 0.22 -1.38 16 21 C -0.09 -1.77 9.95 22.07 0.22 -1.55 16 22 C -0.12 -3.23 9.33 22.29 0.21 -3.02 16 23 C -0.02 -0.64 5.75 -21.28 -0.12 -0.76 16 24 H 0.06 2.28 5.62 -2.39 -0.01 2.27 16 25 H 0.05 2.26 6.76 -2.39 -0.02 2.24 16 26 H 0.03 1.03 7.07 -2.39 -0.02 1.01 16 27 H 0.04 1.74 6.99 -2.39 -0.02 1.72 16 28 H -0.01 -0.58 7.55 -2.39 -0.02 -0.60 16 29 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 30 H 0.09 3.00 6.35 -2.39 -0.02 2.99 16 31 H 0.05 1.67 6.84 -2.39 -0.02 1.66 16 32 H 0.21 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.12 3.56 6.53 -2.91 -0.02 3.54 16 Total: -1.00 -72.59 306.00 1.22 -71.37 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.05 Total: 5.28 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.38 Total: -17.91 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -6.03 Total: -102.97 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.07 Total: -1.47 kcal Total: -72.59 1.22 -71.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140720415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.546 kcal (2) G-P(sol) polarization free energy of solvation -72.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds