Wall clock time and date at job start Tue Mar 31 2020 08:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99621 * 2 1 4 4 H 1.08001 * 119.99925 * 202.66850 * 3 2 1 5 5 C 1.38813 * 120.00023 * 22.67649 * 3 2 1 6 6 N 1.31612 * 120.00335 * 11.14694 * 5 3 2 7 7 Si 1.86797 * 119.99812 * 191.14590 * 5 3 2 8 8 H 1.48500 * 109.47106 * 89.99920 * 7 5 3 9 9 H 1.48499 * 109.47357 * 210.00055 * 7 5 3 10 10 H 1.48502 * 109.47085 * 329.99916 * 7 5 3 11 11 C 1.46501 * 120.00351 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.46817 * 270.00067 * 11 2 1 13 13 C 1.34860 * 125.90292 * 95.00058 * 12 11 2 14 14 C 1.40933 * 107.46817 * 179.97438 * 13 12 11 15 15 C 1.34859 * 107.46399 * 359.73429 * 14 13 12 16 16 N 1.36559 * 125.89805 * 274.99466 * 12 11 2 17 17 C 1.40234 * 125.66781 * 0.02562 * 16 12 11 18 18 C 1.38821 * 120.05103 * 129.99658 * 17 16 12 19 19 C 1.38119 * 119.94301 * 179.97438 * 18 17 16 20 20 C 1.38380 * 120.05558 * 0.02562 * 19 18 17 21 21 Cl 1.73604 * 119.94614 * 179.97438 * 20 19 18 22 22 C 1.38376 * 120.10492 * 359.97438 * 20 19 18 23 23 C 1.38118 * 120.05609 * 0.02562 * 22 20 19 24 24 H 1.09003 * 109.47092 * 274.19747 * 1 2 3 25 25 H 1.08998 * 109.47253 * 34.20061 * 1 2 3 26 26 H 1.09006 * 109.47435 * 154.20272 * 1 2 3 27 27 H 0.97002 * 120.00641 * 179.97438 * 6 5 3 28 28 H 1.08993 * 109.47567 * 149.99569 * 11 2 1 29 29 H 1.09002 * 109.46761 * 29.99327 * 11 2 1 30 30 H 1.08002 * 126.26405 * 359.97438 * 13 12 11 31 31 H 1.07994 * 126.26958 * 180.02562 * 14 13 12 32 32 H 1.08006 * 125.89676 * 180.28713 * 15 14 13 33 33 H 1.07996 * 120.02936 * 359.71088 * 18 17 16 34 34 H 1.08003 * 119.97160 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.97440 * 179.97438 * 22 20 19 36 36 H 1.07995 * 120.03294 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1671 1.2221 -0.3605 5 6 1.5360 2.3416 0.4635 6 7 0.3876 2.2662 1.1021 7 14 2.3401 4.0038 0.1808 8 1 1.8692 4.5684 -1.1095 9 1 1.9749 4.9249 1.2869 10 1 3.8154 3.8394 0.1402 11 6 2.1976 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 6 1.6830 -2.5548 2.1335 14 6 2.2723 -2.6880 3.4068 15 6 3.3798 -1.9186 3.4227 16 7 3.4911 -1.3060 2.2073 17 6 4.5100 -0.4202 1.8284 18 6 4.8361 0.6543 2.6446 19 6 5.8405 1.5251 2.2695 20 6 6.5210 1.3275 1.0809 21 17 7.7824 2.4242 0.6119 22 6 6.1977 0.2572 0.2657 23 6 5.1942 -0.6164 0.6364 24 1 -0.3633 0.0752 1.0249 25 1 -0.3634 0.8499 -0.5776 26 1 -0.3634 -0.9253 -0.4472 27 1 -0.0410 3.0738 1.4263 28 1 3.1499 -1.1382 -0.5144 29 1 1.6085 -2.0281 -0.5147 30 1 0.7830 -3.0442 1.7917 31 1 1.9068 -3.2984 4.2193 32 1 4.0597 -1.8044 4.2541 33 1 4.3021 0.8117 3.5700 34 1 6.0943 2.3615 2.9039 35 1 6.7300 0.1051 -0.6617 36 1 4.9425 -1.4519 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140941649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:07 Heat of formation + Delta-G solvation = 102.342040 kcal Electronic energy + Delta-G solvation = -21139.486174 eV Core-core repulsion = 18037.529735 eV Total energy + Delta-G solvation = -3101.956439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.05185 -38.63100 -36.31830 -35.47698 -32.51882 -31.66072 -30.95865 -28.92119 -28.19916 -25.94051 -25.04411 -22.83220 -22.59995 -21.24774 -19.77006 -19.10914 -17.24957 -16.63537 -16.49320 -15.50968 -14.87011 -14.54976 -13.89510 -13.65508 -13.39457 -13.36305 -13.22897 -13.15034 -12.80973 -12.17790 -11.98018 -11.66050 -11.56649 -11.40208 -11.25225 -10.91153 -10.85507 -10.73843 -10.60119 -10.29927 -10.01668 -9.89022 -8.92288 -8.89111 -8.55939 -7.72527 -7.42406 -6.79005 -5.74298 -3.19446 1.16890 1.43439 2.23894 2.85521 3.34970 3.42553 3.43032 3.44008 3.63919 3.80757 4.49635 4.91041 4.97377 5.31279 5.37975 5.45276 5.49472 5.68372 5.72285 5.86876 5.95208 5.99286 6.07470 6.20088 6.33120 6.34709 6.47299 6.49673 6.77461 6.81334 6.88094 6.91564 7.39202 7.64271 7.74765 7.81382 7.85479 8.09455 8.36700 9.20971 9.82768 10.32174 11.29836 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.008550 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.763830 B = 3274.036290 C = 4838.047280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.587 5.587 3 C -0.247 4.247 4 H 0.067 0.933 5 C 0.008 3.992 6 N -0.901 5.901 7 Si 0.891 3.109 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.274 1.274 11 C 0.199 3.801 12 C 0.045 3.955 13 C -0.212 4.212 14 C -0.189 4.189 15 C -0.036 4.036 16 N -0.395 5.395 17 C 0.167 3.833 18 C -0.099 4.099 19 C -0.093 4.093 20 C -0.041 4.041 21 Cl -0.079 7.079 22 C -0.093 4.093 23 C -0.106 4.106 24 H 0.029 0.971 25 H 0.046 0.954 26 H -0.002 1.002 27 H 0.252 0.748 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.358 -6.051 1.401 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.308 5.308 3 C -0.376 4.376 4 H 0.085 0.915 5 C -0.191 4.191 6 N -0.546 5.546 7 Si 0.721 3.279 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.199 1.199 11 C 0.071 3.929 12 C -0.068 4.068 13 C -0.237 4.237 14 C -0.214 4.214 15 C -0.163 4.163 16 N -0.069 5.069 17 C 0.076 3.924 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.068 4.068 21 Cl -0.050 7.050 22 C -0.113 4.113 23 C -0.126 4.126 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.169 0.831 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.545 -5.588 1.316 12.007 hybrid contribution 0.231 1.294 0.229 1.335 sum 10.776 -4.294 1.545 11.703 Atomic orbital electron populations 1.20817 0.82123 0.95592 0.99461 1.44102 1.02046 1.00114 1.84536 1.19129 0.98186 0.85022 1.35312 0.91535 1.24995 0.97585 0.98311 0.98168 1.70069 1.17756 1.27014 1.39725 0.86429 0.79434 0.84563 0.77468 1.21400 1.21721 1.19933 1.19706 0.96611 0.89129 0.87479 1.22240 0.88857 0.97578 0.98081 1.20555 1.02324 1.05722 0.95104 1.20754 0.97441 1.04847 0.98376 1.21649 1.02741 1.02645 0.89215 1.41417 1.19211 1.34084 1.12141 1.17623 0.89105 0.90621 0.95056 1.20943 0.97284 0.92563 1.01066 1.20810 0.95489 0.99441 0.95474 1.20816 0.94796 0.94275 0.96868 1.98344 1.51257 1.63310 1.92137 1.20786 0.97726 0.93414 0.99336 1.20966 0.95054 1.00347 0.96198 0.95216 0.93571 0.98365 0.93780 0.92992 0.91857 0.85384 0.85358 0.83060 0.84830 0.84763 0.84634 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 9.01 59.85 0.54 4.60 16 2 N -0.59 -14.47 2.91 -182.50 -0.53 -15.00 16 3 C -0.25 -6.56 9.62 -15.06 -0.14 -6.70 16 4 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 5 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 6 N -0.90 -26.21 10.59 55.49 0.59 -25.62 16 7 Si 0.89 21.94 29.57 -169.99 -5.03 16.91 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.20 4.08 5.82 -5.19 -0.03 4.05 16 12 C 0.05 0.91 6.32 -81.69 -0.52 0.40 16 13 C -0.21 -4.07 10.76 -39.76 -0.43 -4.50 16 14 C -0.19 -3.31 10.86 -39.76 -0.43 -3.74 16 15 C -0.04 -0.63 11.13 -16.64 -0.19 -0.81 16 16 N -0.39 -7.52 2.87 -56.73 -0.16 -7.68 16 17 C 0.17 3.01 5.75 -83.58 -0.48 2.53 16 18 C -0.10 -1.70 9.67 -39.41 -0.38 -2.08 16 19 C -0.09 -1.46 9.82 -39.57 -0.39 -1.85 16 20 C -0.04 -0.63 6.32 -39.48 -0.25 -0.87 16 21 Cl -0.08 -1.10 28.95 -51.86 -1.50 -2.60 16 22 C -0.09 -1.38 9.82 -39.57 -0.39 -1.77 16 23 C -0.11 -1.71 8.45 -39.41 -0.33 -2.04 16 24 H 0.03 0.81 7.41 -51.93 -0.38 0.42 16 25 H 0.05 1.22 7.20 -51.93 -0.37 0.84 16 26 H 0.00 -0.05 7.84 -51.93 -0.41 -0.45 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.05 1.01 5.41 -51.93 -0.28 0.73 16 29 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 30 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 33 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.14 2.01 6.85 -52.49 -0.36 1.65 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -30.28 321.77 -9.59 -39.87 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.30 Total: 1.93 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.51 Total: -12.66 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.11 Total: -48.31 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.28 -9.59 -39.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140941649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.209 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds