Wall clock time and date at job start Tue Mar 31 2020 08:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99621 * 2 1 4 4 H 1.08001 * 119.99925 * 202.66850 * 3 2 1 5 5 C 1.38813 * 120.00023 * 22.67649 * 3 2 1 6 6 N 1.31612 * 120.00335 * 11.14694 * 5 3 2 7 7 Si 1.86797 * 119.99812 * 191.14590 * 5 3 2 8 8 H 1.48500 * 109.47106 * 89.99920 * 7 5 3 9 9 H 1.48499 * 109.47357 * 210.00055 * 7 5 3 10 10 H 1.48502 * 109.47085 * 329.99916 * 7 5 3 11 11 C 1.46501 * 120.00351 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.46817 * 270.00067 * 11 2 1 13 13 C 1.34860 * 125.90292 * 95.00058 * 12 11 2 14 14 C 1.40933 * 107.46817 * 179.97438 * 13 12 11 15 15 C 1.34859 * 107.46399 * 359.73429 * 14 13 12 16 16 N 1.36559 * 125.89805 * 274.99466 * 12 11 2 17 17 C 1.40234 * 125.66781 * 0.02562 * 16 12 11 18 18 C 1.38821 * 120.05103 * 129.99658 * 17 16 12 19 19 C 1.38119 * 119.94301 * 179.97438 * 18 17 16 20 20 C 1.38380 * 120.05558 * 0.02562 * 19 18 17 21 21 Cl 1.73604 * 119.94614 * 179.97438 * 20 19 18 22 22 C 1.38376 * 120.10492 * 359.97438 * 20 19 18 23 23 C 1.38118 * 120.05609 * 0.02562 * 22 20 19 24 24 H 1.09003 * 109.47092 * 274.19747 * 1 2 3 25 25 H 1.08998 * 109.47253 * 34.20061 * 1 2 3 26 26 H 1.09006 * 109.47435 * 154.20272 * 1 2 3 27 27 H 0.97002 * 120.00641 * 179.97438 * 6 5 3 28 28 H 1.08993 * 109.47567 * 149.99569 * 11 2 1 29 29 H 1.09002 * 109.46761 * 29.99327 * 11 2 1 30 30 H 1.08002 * 126.26405 * 359.97438 * 13 12 11 31 31 H 1.07994 * 126.26958 * 180.02562 * 14 13 12 32 32 H 1.08006 * 125.89676 * 180.28713 * 15 14 13 33 33 H 1.07996 * 120.02936 * 359.71088 * 18 17 16 34 34 H 1.08003 * 119.97160 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.97440 * 179.97438 * 22 20 19 36 36 H 1.07995 * 120.03294 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1671 1.2221 -0.3605 5 6 1.5360 2.3416 0.4635 6 7 0.3876 2.2662 1.1021 7 14 2.3401 4.0038 0.1808 8 1 1.8692 4.5684 -1.1095 9 1 1.9749 4.9249 1.2869 10 1 3.8154 3.8394 0.1402 11 6 2.1976 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 6 1.6830 -2.5548 2.1335 14 6 2.2723 -2.6880 3.4068 15 6 3.3798 -1.9186 3.4227 16 7 3.4911 -1.3060 2.2073 17 6 4.5100 -0.4202 1.8284 18 6 4.8361 0.6543 2.6446 19 6 5.8405 1.5251 2.2695 20 6 6.5210 1.3275 1.0809 21 17 7.7824 2.4242 0.6119 22 6 6.1977 0.2572 0.2657 23 6 5.1942 -0.6164 0.6364 24 1 -0.3633 0.0752 1.0249 25 1 -0.3634 0.8499 -0.5776 26 1 -0.3634 -0.9253 -0.4472 27 1 -0.0410 3.0738 1.4263 28 1 3.1499 -1.1382 -0.5144 29 1 1.6085 -2.0281 -0.5147 30 1 0.7830 -3.0442 1.7917 31 1 1.9068 -3.2984 4.2193 32 1 4.0597 -1.8044 4.2541 33 1 4.3021 0.8117 3.5700 34 1 6.0943 2.3615 2.9039 35 1 6.7300 0.1051 -0.6617 36 1 4.9425 -1.4519 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140941649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:07 Heat of formation + Delta-G solvation = 88.723874 kcal Electronic energy + Delta-G solvation = -21140.076702 eV Core-core repulsion = 18037.529735 eV Total energy + Delta-G solvation = -3102.546967 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = -0.25 seconds Orbital eigenvalues (eV) -42.43224 -39.87721 -37.47326 -37.36226 -33.83435 -33.53021 -32.25167 -30.56287 -29.50221 -27.92860 -26.73101 -24.07130 -23.91193 -23.10897 -21.14696 -20.47034 -18.84116 -18.42518 -17.76586 -16.88333 -16.69299 -15.81893 -15.59084 -15.31807 -14.96577 -14.66727 -14.60774 -14.57699 -14.21737 -13.83338 -13.46194 -13.15847 -13.01834 -12.89251 -12.69478 -12.62718 -12.47424 -12.43196 -12.14497 -11.98682 -11.87415 -11.74411 -10.64357 -10.19563 -10.12234 -9.07790 -8.94065 -8.71000 -7.80534 -5.27156 -0.09392 0.20847 1.06322 1.38504 1.42144 1.47103 1.50208 2.09370 2.20075 2.50505 2.55687 3.35841 3.70801 3.79431 3.85596 4.03521 4.17546 4.27663 4.36282 4.49516 4.52650 4.68703 4.82069 4.84380 4.88145 4.93045 5.03118 5.12237 5.21707 5.34531 5.48154 5.50720 5.58427 5.65339 5.76352 6.22254 6.34278 6.43693 6.71413 7.16844 7.86770 8.31714 9.22783 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.008550 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.763830 B = 3274.036290 C = 4838.047280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.233 4.233 4 H 0.068 0.932 5 C -0.044 4.044 6 N -0.935 5.935 7 Si 0.941 3.059 8 H -0.288 1.288 9 H -0.300 1.300 10 H -0.263 1.263 11 C 0.200 3.800 12 C 0.017 3.983 13 C -0.220 4.220 14 C -0.200 4.200 15 C -0.035 4.035 16 N -0.401 5.401 17 C 0.143 3.857 18 C -0.114 4.114 19 C -0.096 4.096 20 C -0.047 4.047 21 Cl -0.064 7.064 22 C -0.090 4.090 23 C -0.111 4.111 24 H -0.003 1.003 25 H 0.019 0.981 26 H 0.031 0.969 27 H 0.243 0.757 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.179 0.821 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.084 -6.635 1.099 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.323 5.323 3 C -0.363 4.363 4 H 0.086 0.914 5 C -0.239 4.239 6 N -0.583 5.583 7 Si 0.771 3.229 8 H -0.216 1.216 9 H -0.227 1.227 10 H -0.188 1.188 11 C 0.073 3.927 12 C -0.096 4.096 13 C -0.245 4.245 14 C -0.224 4.224 15 C -0.162 4.162 16 N -0.074 5.074 17 C 0.053 3.947 18 C -0.134 4.134 19 C -0.115 4.115 20 C -0.074 4.074 21 Cl -0.035 7.035 22 C -0.108 4.108 23 C -0.130 4.130 24 H 0.015 0.985 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.196 0.804 33 H 0.147 0.853 34 H 0.169 0.831 35 H 0.180 0.820 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.319 -6.200 1.002 13.827 hybrid contribution -0.189 1.369 0.319 1.418 sum 12.130 -4.831 1.321 13.123 Atomic orbital electron populations 1.20522 0.82611 0.96041 0.97286 1.44253 1.02066 1.01157 1.84860 1.19291 0.97840 0.85820 1.33354 0.91402 1.25572 0.98320 1.00986 0.99062 1.70230 1.19279 1.26897 1.41863 0.85623 0.79196 0.81407 0.76717 1.21557 1.22657 1.18761 1.19796 0.96898 0.87777 0.88236 1.22080 0.90232 0.99252 0.98020 1.20864 1.02361 1.05443 0.95855 1.21104 0.97423 1.05357 0.98529 1.22207 1.03014 1.01671 0.89276 1.41557 1.19247 1.34176 1.12453 1.17903 0.89564 0.91120 0.96154 1.21028 0.98079 0.93078 1.01204 1.21037 0.94996 0.99553 0.95963 1.20994 0.94979 0.94629 0.96760 1.98352 1.50434 1.62753 1.91955 1.21100 0.97109 0.92591 1.00048 1.21140 0.95236 1.00935 0.95726 0.98452 0.96169 0.95038 0.94717 0.91993 0.89923 0.84589 0.82840 0.80387 0.85252 0.83060 0.81992 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.93 9.01 127.77 1.15 10.08 16 2 N -0.60 -29.32 2.91 -731.30 -2.13 -31.45 16 3 C -0.23 -12.24 9.62 84.03 0.81 -11.44 16 4 H 0.07 3.51 7.84 -2.91 -0.02 3.49 16 5 C -0.04 -2.46 5.13 84.86 0.44 -2.03 16 6 N -0.94 -55.59 10.59 21.65 0.23 -55.36 16 7 Si 0.94 45.13 29.57 68.60 2.03 47.16 16 8 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 9 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 10 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 11 C 0.20 7.91 5.82 85.63 0.50 8.41 16 12 C 0.02 0.65 6.32 41.05 0.26 0.91 16 13 C -0.22 -8.16 10.76 22.15 0.24 -7.92 16 14 C -0.20 -6.62 10.86 22.15 0.24 -6.38 16 15 C -0.04 -1.16 11.13 83.18 0.93 -0.24 16 16 N -0.40 -14.79 2.87 -333.38 -0.96 -15.75 16 17 C 0.14 4.98 5.75 38.08 0.22 5.19 16 18 C -0.11 -3.82 9.67 22.38 0.22 -3.60 16 19 C -0.10 -2.86 9.82 22.28 0.22 -2.64 16 20 C -0.05 -1.32 6.32 22.34 0.14 -1.18 16 21 Cl -0.06 -1.60 28.95 -2.72 -0.08 -1.68 16 22 C -0.09 -2.42 9.82 22.27 0.22 -2.21 16 23 C -0.11 -3.37 8.45 22.38 0.19 -3.18 16 24 H 0.00 -0.16 7.41 -2.39 -0.02 -0.18 16 25 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 26 H 0.03 1.31 7.84 -2.38 -0.02 1.29 16 27 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.06 2.30 5.41 -2.39 -0.01 2.29 16 29 H 0.08 2.89 7.86 -2.39 -0.02 2.88 16 30 H 0.14 4.66 8.06 -2.91 -0.02 4.63 16 31 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.18 4.71 8.06 -2.91 -0.02 4.68 16 33 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 34 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.15 4.02 6.85 -2.91 -0.02 4.00 16 Total: -1.00 -64.21 321.77 5.94 -58.28 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.08 Total: 15.03 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 5.76 Total: -16.23 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -2.85 Total: -102.55 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -64.21 5.94 -58.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140941649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.000 kcal (2) G-P(sol) polarization free energy of solvation -64.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.25 seconds