Wall clock time and date at job start Tue Mar 31 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.34230 * 126.49833 * 259.69362 * 13 12 11 15 15 N 1.36860 * 109.92424 * 179.83094 * 14 13 12 16 16 H 0.96999 * 125.06432 * 180.18489 * 15 14 13 17 17 C 1.37692 * 109.87212 * 0.43961 * 15 14 13 18 18 C 1.39122 * 133.49257 * 179.68302 * 17 15 14 19 19 C 1.37857 * 119.76606 * 179.97438 * 18 17 15 20 20 Cl 1.73594 * 119.68061 * 180.02562 * 19 18 17 21 21 C 1.38938 * 120.63678 * 0.04763 * 19 18 17 22 22 C 1.36608 * 120.51683 * 359.97438 * 21 19 18 23 23 C 1.39632 * 119.78306 * 359.97438 * 22 21 19 24 24 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 25 25 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 26 26 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 27 27 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 28 28 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 29 29 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 30 30 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 31 31 H 1.08001 * 125.03692 * 359.97438 * 14 13 12 32 32 H 1.07993 * 120.11762 * 359.97438 * 18 17 15 33 33 H 1.08008 * 119.73830 * 179.97438 * 21 19 18 34 34 H 1.07998 * 120.10723 * 180.02562 * 22 21 19 35 35 H 1.09007 * 113.75652 * 270.36911 * 24 11 10 36 36 H 1.08992 * 113.86038 * 139.01836 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8758 -5.2942 -3.2050 14 6 0.3128 -6.4922 -3.4280 15 7 -0.5475 -6.4129 -4.4895 16 1 -1.0730 -7.1504 -4.8372 17 6 -0.5517 -5.1317 -4.9938 18 6 -1.2240 -4.5193 -6.0467 19 6 -1.0115 -3.1828 -6.3093 20 17 -1.8520 -2.4208 -7.6233 21 6 -0.1308 -2.4399 -5.5329 22 6 0.5395 -3.0223 -4.4948 23 6 0.3383 -4.3745 -4.2107 24 6 2.1611 -3.7399 -0.0455 25 1 -0.4850 0.8400 -0.0004 26 1 0.4835 -2.5465 0.7729 27 1 -0.3212 -2.8279 -1.5258 28 1 1.3294 -2.4995 -2.2139 29 1 2.6375 -4.2949 -2.5327 30 1 2.3447 -5.8766 -1.7705 31 1 0.5080 -7.3856 -2.8535 32 1 -1.9098 -5.0890 -6.6561 33 1 0.0250 -1.3938 -5.7518 34 1 1.2222 -2.4385 -3.8952 35 1 3.1447 -3.5475 -0.4741 36 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141577930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:19 Heat of formation + Delta-G solvation = 66.955423 kcal Electronic energy + Delta-G solvation = -20321.391991 eV Core-core repulsion = 17217.901073 eV Total energy + Delta-G solvation = -3103.490918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30591 -40.20121 -38.43050 -36.93639 -34.87449 -33.61444 -31.43162 -30.29547 -29.31330 -27.07184 -26.64135 -24.17319 -23.85460 -22.81286 -20.64806 -20.01932 -19.06534 -18.43770 -17.47729 -16.86590 -16.69410 -16.26650 -15.80368 -15.52342 -15.28985 -15.08535 -14.89498 -14.20649 -13.88652 -13.72092 -13.68832 -13.20731 -13.03637 -12.84022 -12.72293 -12.51987 -12.31667 -11.97770 -11.95165 -11.67390 -11.47739 -11.17356 -10.91651 -10.50785 -10.44481 -9.49293 -9.18888 -8.59110 -8.11190 -6.22718 0.00013 0.47657 1.08225 1.43450 1.44443 1.52255 1.68024 2.27930 2.44254 2.74936 3.18461 3.49049 3.68872 3.87399 4.01493 4.11850 4.28043 4.36821 4.47440 4.51138 4.59647 4.67075 4.73025 4.80780 4.85759 4.94372 5.05529 5.12911 5.25591 5.32105 5.43352 5.59145 5.62755 5.67167 5.79046 5.89710 6.05956 6.34127 6.48558 6.72254 6.86121 7.45457 8.97783 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.005227 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.906368 B = 5355.389417 C = 7032.975452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.041 3.959 11 N -0.483 5.483 12 C 0.096 3.904 13 C -0.191 4.191 14 C 0.090 3.910 15 N -0.576 5.576 16 H 0.435 0.565 17 C 0.093 3.907 18 C -0.115 4.115 19 C -0.025 4.025 20 Cl -0.065 7.065 21 C -0.147 4.147 22 C -0.074 4.074 23 C -0.114 4.114 24 C 0.012 3.988 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.101 0.899 31 H 0.212 0.788 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 -13.738 -13.041 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.088 4.088 11 N -0.206 5.206 12 C -0.032 4.032 13 C -0.198 4.198 14 C -0.038 4.038 15 N -0.181 5.181 16 H 0.276 0.724 17 C -0.016 4.016 18 C -0.136 4.136 19 C -0.052 4.052 20 Cl -0.037 7.037 21 C -0.167 4.167 22 C -0.093 4.093 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.119 0.881 31 H 0.228 0.772 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.490 -14.197 -12.983 19.296 hybrid contribution 0.477 1.678 -0.436 1.798 sum -1.012 -12.519 -13.419 18.380 Atomic orbital electron populations 1.70094 1.07516 1.27450 1.50920 1.25782 0.95507 1.02497 0.94494 0.85705 0.78446 0.79051 0.79053 1.19441 1.21210 1.19303 1.21402 0.92977 0.91564 1.50994 0.92288 1.20351 0.94192 0.92487 0.93447 1.23725 0.97635 0.88300 0.99092 1.68591 1.26104 1.15574 1.10305 1.20868 0.93020 0.99824 0.89487 1.20250 1.06253 0.93428 0.99827 1.22126 0.91770 0.99603 0.90287 1.41634 1.39505 1.08684 1.28264 0.72404 1.18013 0.99880 0.86402 0.97265 1.19914 1.02600 0.93031 0.98090 1.20402 0.98516 0.93053 0.93256 1.98343 1.76878 1.81663 1.46771 1.20597 0.98752 1.00724 0.96663 1.20456 0.99149 0.93529 0.96125 1.19433 1.00387 0.93893 0.98192 1.23930 0.94932 0.95882 0.96916 0.93014 0.96150 0.94956 0.92936 0.95182 0.88110 0.77168 0.82650 0.84853 0.86653 0.91921 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.99 13.29 21.45 0.28 -54.71 16 2 C 0.02 0.93 5.46 84.66 0.46 1.39 16 3 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.53 -29.31 8.77 25.60 0.22 -29.09 16 8 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 9 C 0.01 0.74 3.60 -10.89 -0.04 0.70 16 10 C 0.04 1.98 6.01 86.34 0.52 2.50 16 11 N -0.48 -19.25 6.26 -911.60 -5.71 -24.96 16 12 C 0.10 3.09 5.36 85.56 0.46 3.55 16 13 C -0.19 -5.71 5.55 -18.62 -0.10 -5.81 16 14 C 0.09 1.91 11.73 82.99 0.97 2.88 16 15 N -0.58 -11.10 6.07 -187.59 -1.14 -12.24 16 16 H 0.44 4.74 8.96 -92.71 -0.83 3.91 16 17 C 0.09 2.46 7.28 39.03 0.28 2.75 16 18 C -0.12 -2.83 9.84 22.39 0.22 -2.61 16 19 C -0.02 -0.68 6.31 22.35 0.14 -0.53 16 20 Cl -0.07 -1.57 28.93 -2.72 -0.08 -1.65 16 21 C -0.15 -4.65 9.75 22.06 0.21 -4.44 16 22 C -0.07 -2.60 9.08 22.23 0.20 -2.40 16 23 C -0.11 -3.72 5.91 -20.20 -0.12 -3.84 16 24 C 0.01 0.49 7.53 86.41 0.65 1.14 16 25 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 26 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.05 2.53 5.04 -2.39 -0.01 2.52 16 29 H 0.03 1.03 7.69 -2.39 -0.02 1.02 16 30 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.12 4.45 5.75 -2.91 -0.02 4.44 16 35 H 0.06 2.47 7.74 -2.38 -0.02 2.45 16 36 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -66.72 315.63 -0.24 -66.96 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.28 Total: 14.67 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 4.09 Total: -33.81 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -6.56 Total: -91.91 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -66.72 -0.24 -66.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141577930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.916 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds