Wall clock time and date at job start Tue Mar 31 2020 06:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48503 * 109.47020 * 274.96585 * 3 2 1 5 5 H 1.48503 * 109.47361 * 34.96640 * 3 2 1 6 6 H 1.48500 * 109.46989 * 154.96803 * 3 2 1 7 7 C 1.39916 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99953 * 164.42027 * 7 2 1 9 9 C 1.41296 * 120.00318 * 344.42092 * 7 2 1 10 10 C 1.40644 * 120.22919 * 335.51153 * 9 7 2 11 11 C 1.38134 * 119.71152 * 180.27159 * 10 9 7 12 12 N 1.40002 * 119.91367 * 179.71287 * 11 10 9 13 13 C 1.34782 * 119.99757 * 324.08275 * 12 11 10 14 14 O 1.21289 * 120.00187 * 4.54457 * 13 12 11 15 15 C 1.50697 * 120.00074 * 184.53941 * 13 12 11 16 16 N 1.46499 * 109.47314 * 179.97438 * 15 13 12 17 17 C 1.34429 * 126.81934 * 124.99849 * 16 15 13 18 18 N 1.30836 * 108.07617 * 179.97438 * 17 16 15 19 19 C 1.33243 * 109.82855 * 0.02562 * 18 17 16 20 20 N 1.30716 * 108.94277 * 359.75355 * 19 18 17 21 21 C 1.39375 * 120.17736 * 359.43286 * 11 10 9 22 22 C 1.38363 * 120.46669 * 0.27604 * 21 11 10 23 23 C 1.38009 * 120.29178 * 0.02592 * 22 21 11 24 24 F 1.35097 * 120.09307 * 179.97438 * 23 22 21 25 25 H 0.97003 * 119.99747 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.14130 * 359.97438 * 10 9 7 27 27 H 0.96998 * 120.00533 * 144.08686 * 12 11 10 28 28 H 1.09002 * 109.47382 * 300.00775 * 15 13 12 29 29 H 1.09001 * 109.47210 * 60.00014 * 15 13 12 30 30 H 1.07997 * 125.96539 * 0.02562 * 17 16 15 31 31 H 1.08000 * 125.52650 * 179.97438 * 19 18 17 32 32 H 1.07993 * 119.76652 * 180.30060 * 21 11 10 33 33 H 1.08003 * 119.85691 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3851 2.1070 -1.3948 5 1 1.4965 2.6201 0.8024 6 1 3.5887 1.4121 0.5924 7 6 2.0081 -1.2117 0.0005 8 1 3.0584 -1.2291 -0.2507 9 6 1.3406 -2.4128 0.3297 10 6 0.1831 -2.3837 1.1281 11 6 -0.4578 -3.5648 1.4480 12 7 -1.6069 -3.5412 2.2475 13 6 -1.7116 -2.6473 3.2508 14 8 -0.8485 -1.8101 3.4097 15 6 -2.9011 -2.6880 4.1752 16 7 -2.7807 -1.6223 5.1732 17 6 -3.6835 -0.6628 5.4401 18 7 -3.2034 0.0922 6.3947 19 6 -2.0015 -0.3516 6.7607 20 7 -1.7013 -1.4031 6.0445 21 6 0.0330 -4.7794 0.9723 22 6 1.1676 -4.8161 0.1813 23 6 1.8268 -3.6483 -0.1450 24 9 2.9346 -3.6888 -0.9172 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2002 -1.4424 1.4934 27 1 -2.3277 -4.1682 2.0794 28 1 -3.8147 -2.5446 3.5983 29 1 -2.9372 -3.6542 4.6785 30 1 -4.6389 -0.5375 4.9524 31 1 -1.3783 0.0844 7.5274 32 1 -0.4761 -5.6983 1.2225 33 1 1.5397 -5.7628 -0.1816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142130266.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:28 Heat of formation + Delta-G solvation = 41.596190 kcal Electronic energy + Delta-G solvation = -22215.982789 eV Core-core repulsion = 18579.515494 eV Total energy + Delta-G solvation = -3636.467295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 5.57 seconds Orbital eigenvalues (eV) -47.21850 -42.00848 -39.71236 -37.16246 -34.47029 -33.95565 -33.31414 -31.13895 -29.84081 -29.09190 -27.08975 -25.45699 -22.68384 -21.93972 -21.73776 -20.92170 -19.78809 -18.06982 -17.30811 -17.01543 -16.07360 -15.85730 -15.73355 -15.02977 -14.88953 -14.77079 -14.35943 -13.98720 -13.98154 -13.56041 -12.99356 -12.88803 -12.49618 -11.95676 -11.87324 -11.78685 -11.65556 -11.18686 -11.01721 -10.53583 -10.40689 -10.02008 -9.97969 -9.84151 -9.69731 -9.45062 -9.25842 -8.90639 -7.62459 -7.01396 -6.82177 -4.46800 1.65679 2.20290 2.37386 2.71299 2.96523 3.03955 3.06052 3.10971 3.16251 3.42715 3.89347 4.30947 4.39967 4.49875 4.76983 4.83073 4.90893 5.28700 5.44335 5.85142 6.03407 6.21567 6.32641 6.47973 6.60887 6.71763 6.82212 6.89522 7.10014 7.34481 7.46225 7.58269 7.94142 7.97814 8.11234 8.16404 8.37835 8.62655 8.70549 8.77386 10.06501 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.005575 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.828322 B = 5021.097081 C = 6527.185412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.444 4.444 8 H 0.085 0.915 9 C 0.092 3.908 10 C -0.136 4.136 11 C 0.132 3.868 12 N -0.662 5.662 13 C 0.487 3.513 14 O -0.480 6.480 15 C 0.113 3.887 16 N -0.366 5.366 17 C 0.252 3.748 18 N -0.547 5.547 19 C 0.189 3.811 20 N -0.285 5.285 21 C -0.242 4.242 22 C -0.107 4.107 23 C -0.041 4.041 24 F -0.164 7.164 25 H 0.282 0.718 26 H 0.152 0.848 27 H 0.400 0.600 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.218 0.782 31 H 0.215 0.785 32 H 0.099 0.901 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 -3.766 6.879 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.472 4.472 8 H 0.103 0.897 9 C 0.088 3.912 10 C -0.158 4.158 11 C 0.040 3.960 12 N -0.308 5.308 13 C 0.270 3.730 14 O -0.351 6.351 15 C -0.014 4.014 16 N -0.158 5.158 17 C -0.044 4.044 18 N -0.274 5.274 19 C -0.114 4.114 20 N -0.111 5.111 21 C -0.263 4.263 22 C -0.127 4.127 23 C -0.061 4.061 24 F -0.143 7.143 25 H 0.093 0.907 26 H 0.169 0.831 27 H 0.234 0.766 28 H 0.147 0.853 29 H 0.135 0.865 30 H 0.234 0.766 31 H 0.232 0.768 32 H 0.118 0.882 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.598 -3.148 7.170 12.387 hybrid contribution -0.101 0.236 -0.521 0.581 sum -9.698 -2.913 6.649 12.114 Atomic orbital electron populations 1.69777 1.07707 1.29523 1.33668 1.25929 0.94832 1.01642 0.91969 0.86190 0.80835 0.80121 0.79077 1.19339 1.19837 1.18160 1.19543 0.97640 0.90644 1.39388 0.89723 1.17531 0.92289 0.91115 0.90234 1.21440 0.98138 0.97045 0.99128 1.17549 0.88758 0.94466 0.95268 1.43194 1.19852 1.36404 1.31311 1.20353 0.88052 0.82891 0.81674 1.90872 1.39869 1.34454 1.69953 1.21578 0.99688 0.91007 0.89135 1.49953 1.13737 1.23841 1.28232 1.26028 0.96963 0.86325 0.95122 1.70500 1.11744 1.29286 1.15911 1.25993 0.92940 0.92766 0.99719 1.78229 1.07278 1.20417 1.05192 1.19816 1.01249 0.94640 1.10627 1.20235 0.96375 0.95739 1.00342 1.17867 0.90145 0.94893 1.03210 1.91264 1.51644 1.97352 1.74031 0.90678 0.83065 0.76649 0.85334 0.86478 0.76564 0.76846 0.88247 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.54 10.82 55.55 0.60 -19.94 16 2 C 0.08 1.96 5.19 -17.34 -0.09 1.87 16 3 Si 0.91 19.61 29.59 -169.99 -5.03 14.58 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.44 -12.29 8.79 -37.79 -0.33 -12.62 16 8 H 0.08 2.30 7.72 -52.49 -0.41 1.90 16 9 C 0.09 2.54 5.59 -106.78 -0.60 1.95 16 10 C -0.14 -3.56 7.32 -38.71 -0.28 -3.84 16 11 C 0.13 2.88 6.28 -83.74 -0.53 2.35 16 12 N -0.66 -10.80 5.33 -9.90 -0.05 -10.85 16 13 C 0.49 8.22 7.70 -10.98 -0.08 8.14 16 14 O -0.48 -11.03 13.24 5.55 0.07 -10.96 16 15 C 0.11 1.18 7.03 -5.20 -0.04 1.15 16 16 N -0.37 -4.97 3.40 -63.81 -0.22 -5.18 16 17 C 0.25 2.95 12.63 -90.65 -1.14 1.81 16 18 N -0.55 -7.76 11.19 -15.83 -0.18 -7.93 16 19 C 0.19 2.74 13.03 -91.81 -1.20 1.54 16 20 N -0.28 -4.74 11.83 29.29 0.35 -4.39 16 21 C -0.24 -4.98 9.97 -39.11 -0.39 -5.37 16 22 C -0.11 -2.39 10.00 -39.62 -0.40 -2.78 16 23 C -0.04 -1.05 7.31 -38.62 -0.28 -1.33 16 24 F -0.16 -4.18 16.71 2.25 0.04 -4.15 16 25 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 26 H 0.15 4.23 4.28 -52.49 -0.22 4.01 16 27 H 0.40 4.49 8.82 -40.82 -0.36 4.13 16 28 H 0.13 0.73 8.09 -51.93 -0.42 0.31 16 29 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.22 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.22 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 301.84 15.07 4.55 4.55 Total: -1.00 -36.20 301.84 -7.89 -44.08 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -2.66 Total: 7.34 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -5.36 Total: -7.15 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.50 Total: -48.30 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.04 Total: -4.15 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -36.20 -7.89 -44.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142130266.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.680 kcal (2) G-P(sol) polarization free energy of solvation -36.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.57 seconds