Wall clock time and date at job start Tue Mar 31 2020 06:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48503 * 109.47020 * 274.96585 * 3 2 1 5 5 H 1.48503 * 109.47361 * 34.96640 * 3 2 1 6 6 H 1.48500 * 109.46989 * 154.96803 * 3 2 1 7 7 C 1.39916 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99953 * 164.42027 * 7 2 1 9 9 C 1.41296 * 120.00318 * 344.42092 * 7 2 1 10 10 C 1.40644 * 120.22919 * 335.51153 * 9 7 2 11 11 C 1.38134 * 119.71152 * 180.27159 * 10 9 7 12 12 N 1.40002 * 119.91367 * 179.71287 * 11 10 9 13 13 C 1.34782 * 119.99757 * 324.08275 * 12 11 10 14 14 O 1.21289 * 120.00187 * 4.54457 * 13 12 11 15 15 C 1.50697 * 120.00074 * 184.53941 * 13 12 11 16 16 N 1.46499 * 109.47314 * 179.97438 * 15 13 12 17 17 C 1.34429 * 126.81934 * 124.99849 * 16 15 13 18 18 N 1.30836 * 108.07617 * 179.97438 * 17 16 15 19 19 C 1.33243 * 109.82855 * 0.02562 * 18 17 16 20 20 N 1.30716 * 108.94277 * 359.75355 * 19 18 17 21 21 C 1.39375 * 120.17736 * 359.43286 * 11 10 9 22 22 C 1.38363 * 120.46669 * 0.27604 * 21 11 10 23 23 C 1.38009 * 120.29178 * 0.02592 * 22 21 11 24 24 F 1.35097 * 120.09307 * 179.97438 * 23 22 21 25 25 H 0.97003 * 119.99747 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.14130 * 359.97438 * 10 9 7 27 27 H 0.96998 * 120.00533 * 144.08686 * 12 11 10 28 28 H 1.09002 * 109.47382 * 300.00775 * 15 13 12 29 29 H 1.09001 * 109.47210 * 60.00014 * 15 13 12 30 30 H 1.07997 * 125.96539 * 0.02562 * 17 16 15 31 31 H 1.08000 * 125.52650 * 179.97438 * 19 18 17 32 32 H 1.07993 * 119.76652 * 180.30060 * 21 11 10 33 33 H 1.08003 * 119.85691 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3851 2.1070 -1.3948 5 1 1.4965 2.6201 0.8024 6 1 3.5887 1.4121 0.5924 7 6 2.0081 -1.2117 0.0005 8 1 3.0584 -1.2291 -0.2507 9 6 1.3406 -2.4128 0.3297 10 6 0.1831 -2.3837 1.1281 11 6 -0.4578 -3.5648 1.4480 12 7 -1.6069 -3.5412 2.2475 13 6 -1.7116 -2.6473 3.2508 14 8 -0.8485 -1.8101 3.4097 15 6 -2.9011 -2.6880 4.1752 16 7 -2.7807 -1.6223 5.1732 17 6 -3.6835 -0.6628 5.4401 18 7 -3.2034 0.0922 6.3947 19 6 -2.0015 -0.3516 6.7607 20 7 -1.7013 -1.4031 6.0445 21 6 0.0330 -4.7794 0.9723 22 6 1.1676 -4.8161 0.1813 23 6 1.8268 -3.6483 -0.1450 24 9 2.9346 -3.6888 -0.9172 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2002 -1.4424 1.4934 27 1 -2.3277 -4.1682 2.0794 28 1 -3.8147 -2.5446 3.5983 29 1 -2.9372 -3.6542 4.6785 30 1 -4.6389 -0.5375 4.9524 31 1 -1.3783 0.0844 7.5274 32 1 -0.4761 -5.6983 1.2225 33 1 1.5397 -5.7628 -0.1816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142130266.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:24 Heat of formation + Delta-G solvation = 17.343675 kcal Electronic energy + Delta-G solvation = -22217.034457 eV Core-core repulsion = 18579.515494 eV Total energy + Delta-G solvation = -3637.518963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -49.19043 -42.98556 -41.15595 -38.87607 -36.18381 -35.07635 -34.92905 -32.15292 -31.71637 -30.51648 -28.41386 -27.35199 -24.02794 -23.37144 -22.88285 -22.43623 -21.25986 -19.74295 -18.42642 -18.35328 -17.96954 -17.49250 -17.03862 -16.55494 -16.19900 -16.13614 -15.93826 -15.70589 -15.07354 -14.87204 -14.61542 -14.41415 -13.91994 -13.69972 -13.55967 -13.50898 -12.94425 -12.82417 -12.70996 -12.30795 -12.22322 -11.67662 -11.28904 -11.18592 -11.00937 -10.77003 -10.73400 -10.41311 -9.51220 -8.83226 -8.65195 -6.47918 0.61253 0.71783 0.89680 1.27271 1.34839 1.36823 1.42680 1.66102 2.03410 2.11053 2.20830 2.61141 3.48245 3.54154 3.58765 3.75682 4.04655 4.09634 4.15442 4.32111 4.43322 4.64502 4.94112 5.04217 5.09410 5.19241 5.25577 5.48566 5.61564 5.72082 5.75871 5.91729 6.05238 6.18868 6.48973 6.61595 6.75098 6.85383 7.13361 7.32874 8.18406 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.005575 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.828322 B = 5021.097081 C = 6527.185412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.037 3.963 3 Si 0.978 3.022 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.493 4.493 8 H 0.069 0.931 9 C 0.057 3.943 10 C -0.166 4.166 11 C 0.138 3.862 12 N -0.647 5.647 13 C 0.480 3.520 14 O -0.548 6.548 15 C 0.122 3.878 16 N -0.377 5.377 17 C 0.264 3.736 18 N -0.577 5.577 19 C 0.182 3.818 20 N -0.339 5.339 21 C -0.218 4.218 22 C -0.106 4.106 23 C -0.075 4.075 24 F -0.172 7.172 25 H 0.288 0.712 26 H 0.129 0.871 27 H 0.428 0.572 28 H 0.189 0.811 29 H 0.154 0.846 30 H 0.270 0.730 31 H 0.233 0.767 32 H 0.153 0.847 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 -5.423 7.406 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.522 4.522 8 H 0.087 0.913 9 C 0.053 3.947 10 C -0.187 4.187 11 C 0.044 3.956 12 N -0.296 5.296 13 C 0.267 3.733 14 O -0.424 6.424 15 C -0.003 4.003 16 N -0.168 5.168 17 C -0.032 4.032 18 N -0.304 5.304 19 C -0.120 4.120 20 N -0.166 5.166 21 C -0.239 4.239 22 C -0.125 4.125 23 C -0.095 4.095 24 F -0.151 7.151 25 H 0.098 0.902 26 H 0.147 0.853 27 H 0.268 0.732 28 H 0.206 0.794 29 H 0.171 0.829 30 H 0.286 0.714 31 H 0.249 0.751 32 H 0.170 0.830 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.513 -4.868 7.687 15.471 hybrid contribution 0.669 0.554 -0.638 1.078 sum -11.844 -4.314 7.049 14.442 Atomic orbital electron populations 1.69817 1.08681 1.30411 1.34547 1.26678 0.95685 1.04339 0.91240 0.85248 0.79102 0.76013 0.79813 1.17614 1.19048 1.18696 1.19666 0.97365 0.92438 1.42692 0.91279 1.17921 0.93547 0.91964 0.91232 1.21354 0.98964 0.98070 1.00325 1.17692 0.89796 0.93592 0.94537 1.43083 1.19005 1.37090 1.30373 1.21569 0.89010 0.81110 0.81651 1.90868 1.42848 1.37036 1.71598 1.21952 0.98277 0.92137 0.87944 1.50122 1.13358 1.24959 1.28346 1.27062 0.97848 0.84452 0.93797 1.70510 1.11912 1.30510 1.17512 1.26453 0.93398 0.92416 0.99780 1.78129 1.09698 1.21927 1.06862 1.20397 0.99882 0.95976 1.07677 1.20685 0.96293 0.95809 0.99748 1.18271 0.90865 0.95909 1.04465 1.91224 1.52145 1.97417 1.74361 0.90189 0.85337 0.73238 0.79428 0.82862 0.71423 0.75110 0.82988 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.34 10.82 21.82 0.24 -44.10 16 2 C 0.04 1.99 5.19 85.24 0.44 2.43 16 3 Si 0.98 41.97 29.59 68.60 2.03 44.00 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.49 -29.07 8.79 23.43 0.21 -28.87 16 8 H 0.07 4.07 7.72 -2.91 -0.02 4.05 16 9 C 0.06 3.28 5.59 -21.26 -0.12 3.16 16 10 C -0.17 -8.88 7.32 22.83 0.17 -8.72 16 11 C 0.14 5.80 6.28 38.08 0.24 6.04 16 12 N -0.65 -19.08 5.33 -303.61 -1.62 -20.70 16 13 C 0.48 15.19 7.70 87.66 0.68 15.86 16 14 O -0.55 -25.51 13.24 -3.06 -0.04 -25.55 16 15 C 0.12 2.02 7.03 85.63 0.60 2.62 16 16 N -0.38 -9.23 3.40 -355.81 -1.21 -10.44 16 17 C 0.26 5.35 12.63 180.36 2.28 7.63 16 18 N -0.58 -15.52 11.19 -204.00 -2.28 -17.81 16 19 C 0.18 5.25 13.03 180.76 2.36 7.60 16 20 N -0.34 -11.14 11.83 -61.24 -0.72 -11.87 16 21 C -0.22 -8.23 9.97 22.57 0.22 -8.00 16 22 C -0.11 -4.52 10.00 22.25 0.22 -4.29 16 23 C -0.07 -3.93 7.31 22.89 0.17 -3.76 16 24 F -0.17 -9.12 16.71 44.97 0.75 -8.37 16 25 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 26 H 0.13 7.52 4.28 -2.91 -0.01 7.51 16 27 H 0.43 7.43 8.82 -92.71 -0.82 6.61 16 28 H 0.19 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.27 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.23 5.13 8.06 -2.91 -0.02 5.11 16 32 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.14 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -88.13 301.84 4.97 -83.16 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.37 Total: 19.96 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 7.46 Total: -8.29 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -5.60 Total: -104.92 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.04 Total: -25.55 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 0.75 Total: -8.37 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -88.13 4.97 -83.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142130266.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.508 kcal (2) G-P(sol) polarization free energy of solvation -88.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds