Wall clock time and date at job start Tue Mar 31 2020 06:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48498 * 109.47322 * 274.99892 * 3 2 1 5 5 H 1.48501 * 109.47023 * 35.00130 * 3 2 1 6 6 H 1.48500 * 109.46972 * 154.99555 * 3 2 1 7 7 C 1.39925 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00096 * 168.98910 * 7 2 1 9 9 C 1.41294 * 120.00161 * 348.98672 * 7 2 1 10 10 C 1.40641 * 120.22845 * 331.75224 * 9 7 2 11 11 C 1.38142 * 119.70844 * 180.26737 * 10 9 7 12 12 N 1.40007 * 119.91039 * 179.75145 * 11 10 9 13 13 C 1.34783 * 119.99899 * 326.08633 * 12 11 10 14 14 O 1.21287 * 120.00043 * 354.88583 * 13 12 11 15 15 C 1.50697 * 119.99544 * 174.87585 * 13 12 11 16 16 N 1.46511 * 109.46798 * 180.02562 * 15 13 12 17 17 N 1.28593 * 124.61826 * 269.70276 * 16 15 13 18 18 C 1.31384 * 108.71426 * 180.26378 * 17 16 15 19 19 C 1.39675 * 105.90125 * 359.97438 * 18 17 16 20 20 N 1.28600 * 124.61349 * 90.00265 * 16 15 13 21 21 C 1.39369 * 120.18031 * 359.48070 * 11 10 9 22 22 C 1.38367 * 120.46526 * 0.25184 * 21 11 10 23 23 C 1.38009 * 120.29167 * 0.02562 * 22 21 11 24 24 F 1.35101 * 120.09351 * 179.97438 * 23 22 21 25 25 H 0.97001 * 119.99748 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.14640 * 0.02562 * 10 9 7 27 27 H 0.96991 * 120.00093 * 146.09297 * 12 11 10 28 28 H 1.08997 * 109.47293 * 60.01015 * 15 13 12 29 29 H 1.08996 * 109.48056 * 300.00565 * 15 13 12 30 30 H 1.08001 * 127.04580 * 179.97438 * 18 17 16 31 31 H 1.08003 * 127.04727 * 180.02562 * 19 18 17 32 32 H 1.07990 * 119.76942 * 180.27369 * 21 11 10 33 33 H 1.08000 * 119.85460 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3845 2.1074 -1.3947 5 1 1.4969 2.6198 0.8031 6 1 3.5889 1.4119 0.5918 7 6 2.0081 -1.2118 -0.0005 8 1 3.0732 -1.2204 -0.1792 9 6 1.3211 -2.4243 0.2327 10 6 0.1535 -2.4371 1.0166 11 6 -0.5065 -3.6295 1.2423 12 7 -1.6663 -3.6479 2.0264 13 6 -1.7906 -2.7988 3.0657 14 8 -0.8624 -2.0839 3.3792 15 6 -3.0832 -2.7377 3.8381 16 7 -2.9654 -1.7450 4.9093 17 7 -2.5554 -2.0012 6.1008 18 6 -2.5787 -0.8907 6.8025 19 6 -3.0454 0.1000 5.9356 20 7 -3.2633 -0.5000 4.7873 21 6 -0.0242 -4.8133 0.6870 22 6 1.1207 -4.8083 -0.0900 23 6 1.7986 -3.6290 -0.3232 24 9 2.9163 -3.6288 -1.0821 25 1 -0.4850 0.8401 0.0004 26 1 -0.2232 -1.5194 1.4435 27 1 -2.3802 -4.2717 1.8216 28 1 -3.2947 -3.7157 4.2704 29 1 -3.8942 -2.4537 3.1676 30 1 -2.2953 -0.7689 7.8375 31 1 -3.1963 1.1451 6.1627 32 1 -0.5479 -5.7409 0.8641 33 1 1.4855 -5.7313 -0.5158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142193706.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:36 Heat of formation + Delta-G solvation = 58.569365 kcal Electronic energy + Delta-G solvation = -22264.354026 eV Core-core repulsion = 18628.622743 eV Total energy + Delta-G solvation = -3635.731283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.23181 -43.44219 -39.78361 -37.18956 -34.47238 -33.68323 -33.29555 -32.31101 -29.84090 -29.16778 -27.24629 -25.45699 -22.80087 -22.65503 -21.65861 -20.82749 -19.84565 -18.15252 -17.45930 -17.21534 -16.08262 -15.87799 -15.63236 -15.56453 -15.02901 -14.66062 -14.36603 -14.22119 -13.99950 -13.61064 -12.99120 -12.74357 -12.38286 -11.91024 -11.85681 -11.67266 -11.55379 -11.20973 -11.02409 -10.69783 -10.52605 -10.41525 -10.21483 -9.88377 -9.79584 -9.44899 -9.17963 -8.94525 -7.59547 -6.99861 -6.78339 -4.47444 1.82698 2.23276 2.31907 2.59326 2.69941 2.97187 3.07172 3.12616 3.16470 3.45374 3.91397 4.21862 4.50724 4.75348 4.78809 4.88263 5.13347 5.39867 5.42495 5.83157 6.01869 6.06614 6.24574 6.30636 6.57135 6.66059 6.79000 6.88050 7.11908 7.31679 7.43471 7.57724 7.92733 7.96119 8.11896 8.35026 8.41606 8.58947 8.71970 8.76611 10.11967 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.005650 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.189978 B = 4954.781814 C = 6513.751286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.446 4.446 8 H 0.084 0.916 9 C 0.094 3.906 10 C -0.131 4.131 11 C 0.132 3.868 12 N -0.659 5.659 13 C 0.491 3.509 14 O -0.492 6.492 15 C 0.124 3.876 16 N -0.141 5.141 17 N -0.283 5.283 18 C -0.028 4.028 19 C -0.028 4.028 20 N -0.276 5.276 21 C -0.237 4.237 22 C -0.109 4.109 23 C -0.036 4.036 24 F -0.163 7.163 25 H 0.283 0.717 26 H 0.148 0.852 27 H 0.401 0.599 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.196 0.804 31 H 0.196 0.804 32 H 0.101 0.899 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -2.610 8.139 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.475 4.475 8 H 0.102 0.898 9 C 0.090 3.910 10 C -0.153 4.153 11 C 0.040 3.960 12 N -0.304 5.304 13 C 0.274 3.726 14 O -0.364 6.364 15 C -0.001 4.001 16 N -0.041 5.041 17 N -0.123 5.123 18 C -0.211 4.211 19 C -0.211 4.211 20 N -0.117 5.117 21 C -0.259 4.259 22 C -0.129 4.129 23 C -0.056 4.056 24 F -0.142 7.142 25 H 0.094 0.906 26 H 0.165 0.835 27 H 0.236 0.764 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.213 0.787 31 H 0.213 0.787 32 H 0.119 0.881 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.265 -2.832 7.332 12.150 hybrid contribution 0.230 1.042 0.415 1.144 sum -9.035 -1.791 7.747 12.036 Atomic orbital electron populations 1.69749 1.07577 1.29515 1.34468 1.25919 0.94904 1.01554 0.92117 0.86161 0.80638 0.80146 0.79075 1.19346 1.19874 1.18274 1.19521 0.96338 0.90168 1.41499 0.89792 1.17509 0.92343 0.91323 0.89850 1.21312 0.97888 0.96304 0.99753 1.17552 0.88441 0.94607 0.95423 1.43172 1.19747 1.38175 1.29280 1.20374 0.89171 0.81821 0.81225 1.90858 1.39437 1.40296 1.65773 1.21687 0.99001 0.91809 0.87567 1.47288 1.44072 1.05248 1.07486 1.74016 1.16544 1.28211 0.93539 1.24742 1.05493 0.88758 1.02085 1.24764 1.05091 1.02002 0.89229 1.74084 1.19000 0.93212 1.25366 1.19822 1.00848 0.95067 1.10138 1.20247 0.96200 0.95717 1.00709 1.17915 0.89441 0.95471 1.02787 1.91271 1.50819 1.97416 1.74680 0.90639 0.83502 0.76428 0.84729 0.84528 0.78674 0.78673 0.88092 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.96 10.82 55.55 0.60 -20.36 16 2 C 0.07 1.92 5.25 -17.34 -0.09 1.83 16 3 Si 0.92 19.71 29.57 -169.99 -5.03 14.68 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.45 -12.42 8.76 -37.79 -0.33 -12.75 16 8 H 0.08 2.29 7.76 -52.49 -0.41 1.88 16 9 C 0.09 2.59 5.56 -106.78 -0.59 2.00 16 10 C -0.13 -3.46 7.26 -38.71 -0.28 -3.74 16 11 C 0.13 2.91 6.26 -83.74 -0.52 2.39 16 12 N -0.66 -11.11 5.34 -9.90 -0.05 -11.16 16 13 C 0.49 8.77 7.63 -10.98 -0.08 8.68 16 14 O -0.49 -11.66 14.14 5.55 0.08 -11.58 16 15 C 0.12 1.55 7.02 -5.19 -0.04 1.51 16 16 N -0.14 -2.20 3.44 -11.66 -0.04 -2.24 16 17 N -0.28 -4.38 12.05 30.68 0.37 -4.01 16 18 C -0.03 -0.35 12.20 -17.21 -0.21 -0.56 16 19 C -0.03 -0.36 12.20 -17.21 -0.21 -0.57 16 20 N -0.28 -4.47 12.05 30.67 0.37 -4.10 16 21 C -0.24 -4.90 9.96 -39.11 -0.39 -5.29 16 22 C -0.11 -2.43 10.00 -39.62 -0.40 -2.82 16 23 C -0.04 -0.92 7.31 -38.62 -0.28 -1.20 16 24 F -0.16 -4.15 16.75 2.25 0.04 -4.12 16 25 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 26 H 0.15 4.18 4.56 -52.49 -0.24 3.94 16 27 H 0.40 4.70 8.82 -40.82 -0.36 4.34 16 28 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.14 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.20 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.11 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -35.59 302.84 -5.21 -40.80 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -2.68 Total: 8.06 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -3.43 Total: -10.53 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 1.25 Total: -41.88 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.59 -5.21 -40.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142193706.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.367 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds