Wall clock time and date at job start Tue Mar 31 2020 06:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48498 * 109.47322 * 274.99892 * 3 2 1 5 5 H 1.48501 * 109.47023 * 35.00130 * 3 2 1 6 6 H 1.48500 * 109.46972 * 154.99555 * 3 2 1 7 7 C 1.39925 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00096 * 168.98910 * 7 2 1 9 9 C 1.41294 * 120.00161 * 348.98672 * 7 2 1 10 10 C 1.40641 * 120.22845 * 331.75224 * 9 7 2 11 11 C 1.38142 * 119.70844 * 180.26737 * 10 9 7 12 12 N 1.40007 * 119.91039 * 179.75145 * 11 10 9 13 13 C 1.34783 * 119.99899 * 326.08633 * 12 11 10 14 14 O 1.21287 * 120.00043 * 354.88583 * 13 12 11 15 15 C 1.50697 * 119.99544 * 174.87585 * 13 12 11 16 16 N 1.46511 * 109.46798 * 180.02562 * 15 13 12 17 17 N 1.28593 * 124.61826 * 269.70276 * 16 15 13 18 18 C 1.31384 * 108.71426 * 180.26378 * 17 16 15 19 19 C 1.39675 * 105.90125 * 359.97438 * 18 17 16 20 20 N 1.28600 * 124.61349 * 90.00265 * 16 15 13 21 21 C 1.39369 * 120.18031 * 359.48070 * 11 10 9 22 22 C 1.38367 * 120.46526 * 0.25184 * 21 11 10 23 23 C 1.38009 * 120.29167 * 0.02562 * 22 21 11 24 24 F 1.35101 * 120.09351 * 179.97438 * 23 22 21 25 25 H 0.97001 * 119.99748 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.14640 * 0.02562 * 10 9 7 27 27 H 0.96991 * 120.00093 * 146.09297 * 12 11 10 28 28 H 1.08997 * 109.47293 * 60.01015 * 15 13 12 29 29 H 1.08996 * 109.48056 * 300.00565 * 15 13 12 30 30 H 1.08001 * 127.04580 * 179.97438 * 18 17 16 31 31 H 1.08003 * 127.04727 * 180.02562 * 19 18 17 32 32 H 1.07990 * 119.76942 * 180.27369 * 21 11 10 33 33 H 1.08000 * 119.85460 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3845 2.1074 -1.3947 5 1 1.4969 2.6198 0.8031 6 1 3.5889 1.4119 0.5918 7 6 2.0081 -1.2118 -0.0005 8 1 3.0732 -1.2204 -0.1792 9 6 1.3211 -2.4243 0.2327 10 6 0.1535 -2.4371 1.0166 11 6 -0.5065 -3.6295 1.2423 12 7 -1.6663 -3.6479 2.0264 13 6 -1.7906 -2.7988 3.0657 14 8 -0.8624 -2.0839 3.3792 15 6 -3.0832 -2.7377 3.8381 16 7 -2.9654 -1.7450 4.9093 17 7 -2.5554 -2.0012 6.1008 18 6 -2.5787 -0.8907 6.8025 19 6 -3.0454 0.1000 5.9356 20 7 -3.2633 -0.5000 4.7873 21 6 -0.0242 -4.8133 0.6870 22 6 1.1207 -4.8083 -0.0900 23 6 1.7986 -3.6290 -0.3232 24 9 2.9163 -3.6288 -1.0821 25 1 -0.4850 0.8401 0.0004 26 1 -0.2232 -1.5194 1.4435 27 1 -2.3802 -4.2717 1.8216 28 1 -3.2947 -3.7157 4.2704 29 1 -3.8942 -2.4537 3.1676 30 1 -2.2953 -0.7689 7.8375 31 1 -3.1963 1.1451 6.1627 32 1 -0.5479 -5.7409 0.8641 33 1 1.4855 -5.7313 -0.5158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142193706.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:36 Heat of formation + Delta-G solvation = 32.228831 kcal Electronic energy + Delta-G solvation = -22265.496238 eV Core-core repulsion = 18628.622743 eV Total energy + Delta-G solvation = -3636.873495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.20838 -44.47157 -41.30072 -38.94517 -36.21831 -35.11613 -34.70767 -33.37752 -31.73411 -30.60212 -28.65605 -27.37363 -24.12333 -23.80604 -23.33681 -22.32178 -21.36150 -19.80735 -18.78141 -18.52793 -17.98961 -17.55723 -17.07547 -16.77454 -16.61328 -16.16060 -15.96484 -15.63118 -15.45798 -14.99674 -14.68820 -14.42894 -13.87324 -13.69789 -13.52046 -13.42814 -12.91974 -12.82094 -12.56381 -12.35892 -12.20929 -11.78487 -11.67332 -11.37995 -11.31769 -11.23793 -10.77315 -10.24246 -9.50125 -8.82590 -8.65297 -6.50458 0.54819 0.75744 0.87036 1.27765 1.28044 1.35677 1.43366 1.55823 1.63143 2.12455 2.16837 2.62105 3.32245 3.46607 3.53586 3.96460 4.01637 4.03394 4.17791 4.29972 4.57981 4.61334 4.91177 4.98127 5.04058 5.08504 5.17745 5.35266 5.56404 5.63954 5.69888 5.74856 6.01863 6.14710 6.45723 6.50214 6.74541 6.82380 7.18268 7.37802 8.21941 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.005650 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.189978 B = 4954.781814 C = 6513.751286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.494 4.494 8 H 0.070 0.930 9 C 0.058 3.942 10 C -0.160 4.160 11 C 0.136 3.864 12 N -0.643 5.643 13 C 0.488 3.512 14 O -0.557 6.557 15 C 0.130 3.870 16 N -0.157 5.157 17 N -0.310 5.310 18 C -0.025 4.025 19 C -0.029 4.029 20 N -0.315 5.315 21 C -0.213 4.213 22 C -0.106 4.106 23 C -0.067 4.067 24 F -0.170 7.170 25 H 0.287 0.713 26 H 0.121 0.879 27 H 0.430 0.570 28 H 0.180 0.820 29 H 0.169 0.831 30 H 0.234 0.766 31 H 0.229 0.771 32 H 0.155 0.845 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.464 -3.964 9.227 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.182 4.182 3 Si 0.802 3.198 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.523 4.523 8 H 0.088 0.912 9 C 0.055 3.945 10 C -0.181 4.181 11 C 0.043 3.957 12 N -0.290 5.290 13 C 0.274 3.726 14 O -0.433 6.433 15 C 0.006 3.994 16 N -0.057 5.057 17 N -0.150 5.150 18 C -0.208 4.208 19 C -0.212 4.212 20 N -0.156 5.156 21 C -0.234 4.234 22 C -0.125 4.125 23 C -0.088 4.088 24 F -0.149 7.149 25 H 0.097 0.903 26 H 0.139 0.861 27 H 0.270 0.730 28 H 0.198 0.802 29 H 0.187 0.813 30 H 0.250 0.750 31 H 0.246 0.754 32 H 0.173 0.827 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.149 -4.250 8.401 14.593 hybrid contribution 0.720 1.298 0.172 1.494 sum -10.430 -2.952 8.574 13.820 Atomic orbital electron populations 1.69810 1.08685 1.30380 1.35487 1.26721 0.95755 1.04455 0.91299 0.85195 0.78986 0.75868 0.79782 1.17765 1.18955 1.18550 1.19660 0.96023 0.91877 1.44783 0.91188 1.17883 0.93529 0.92244 0.90869 1.21180 0.98795 0.97258 1.00909 1.17696 0.89374 0.93785 0.94874 1.43032 1.18989 1.38713 1.28313 1.21388 0.90276 0.80089 0.80882 1.90839 1.42222 1.42623 1.67608 1.21973 0.96059 0.93831 0.87505 1.47541 1.44819 1.05418 1.07925 1.73972 1.17385 1.29617 0.94059 1.25462 1.03958 0.87846 1.03502 1.25451 1.03727 1.03551 0.88422 1.74040 1.20456 0.94050 1.27016 1.20406 0.99596 0.96312 1.07066 1.20706 0.95998 0.95712 1.00122 1.18298 0.90115 0.96493 1.03853 1.91234 1.51271 1.97497 1.74937 0.90253 0.86133 0.73040 0.80247 0.81340 0.74996 0.75431 0.82742 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.61 10.82 21.82 0.24 -45.37 16 2 C 0.03 1.79 5.25 85.25 0.45 2.23 16 3 Si 0.98 42.08 29.57 68.60 2.03 44.11 16 4 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.49 -29.24 8.76 23.43 0.21 -29.03 16 8 H 0.07 4.12 7.76 -2.91 -0.02 4.10 16 9 C 0.06 3.37 5.56 -21.26 -0.12 3.25 16 10 C -0.16 -8.70 7.26 22.83 0.17 -8.53 16 11 C 0.14 5.87 6.26 38.08 0.24 6.11 16 12 N -0.64 -20.22 5.34 -303.60 -1.62 -21.85 16 13 C 0.49 16.90 7.63 87.65 0.67 17.57 16 14 O -0.56 -27.02 14.14 -3.05 -0.04 -27.06 16 15 C 0.13 2.92 7.02 85.63 0.60 3.53 16 16 N -0.16 -4.69 3.44 -190.80 -0.66 -5.35 16 17 N -0.31 -9.13 12.05 -56.86 -0.69 -9.82 16 18 C -0.02 -0.58 12.20 85.11 1.04 0.46 16 19 C -0.03 -0.70 12.20 85.11 1.04 0.34 16 20 N -0.32 -9.92 12.05 -56.87 -0.69 -10.60 16 21 C -0.21 -8.07 9.96 22.57 0.22 -7.85 16 22 C -0.11 -4.50 10.00 22.25 0.22 -4.28 16 23 C -0.07 -3.52 7.31 22.89 0.17 -3.35 16 24 F -0.17 -8.95 16.75 44.97 0.75 -8.20 16 25 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 26 H 0.12 7.23 4.56 -2.91 -0.01 7.21 16 27 H 0.43 8.30 8.82 -92.72 -0.82 7.49 16 28 H 0.18 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.17 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.23 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.23 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.16 4.24 8.06 -2.92 -0.02 4.22 16 33 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -84.82 302.84 4.59 -80.23 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.37 Total: 23.46 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 4.90 Total: -19.55 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.41 Total: -92.99 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.04 Total: -27.06 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.75 Total: -8.20 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -84.82 4.59 -80.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142193706.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.460 kcal (2) G-P(sol) polarization free energy of solvation -84.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds