Wall clock time and date at job start Tue Mar 31 2020 08:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48500 * 109.47073 * 239.99570 * 3 2 1 5 5 H 1.48497 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46980 * 120.00159 * 3 2 1 7 7 C 1.37874 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00479 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46923 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99662 * 0.02562 * 10 9 7 12 12 N 1.34773 * 119.99852 * 180.02562 * 10 9 7 13 13 C 1.40131 * 120.00108 * 185.27789 * 12 10 9 14 14 C 1.39102 * 119.90959 * 213.35087 * 13 12 10 15 15 C 1.38075 * 120.45498 * 179.88028 * 14 13 12 16 16 C 1.38481 * 120.00898 * 0.02562 * 15 14 13 17 17 C 1.40376 * 119.79877 * 0.18737 * 16 15 14 18 18 C 1.38523 * 119.90915 * 33.38056 * 13 12 10 19 19 C 1.47557 * 118.95579 * 179.70291 * 17 16 15 20 20 O 1.21582 * 120.58968 * 227.85577 * 19 17 16 21 21 N 1.35477 * 118.81396 * 47.87161 * 19 17 16 22 22 C 1.46403 * 119.57627 * 4.82926 * 21 19 17 23 23 C 1.52291 * 110.74348 * 285.03813 * 22 21 19 24 24 O 1.35731 * 120.93673 * 180.38758 * 16 15 14 25 25 H 0.97005 * 119.99678 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46773 * 60.00771 * 9 7 2 27 27 H 1.08994 * 109.47345 * 300.00424 * 9 7 2 28 28 H 0.97000 * 119.99664 * 5.27844 * 12 10 9 29 29 H 1.07999 * 119.77392 * 359.90688 * 14 13 12 30 30 H 1.08000 * 119.99835 * 179.97438 * 15 14 13 31 31 H 1.08002 * 120.18960 * 0.05778 * 18 13 12 32 32 H 0.97002 * 120.21507 * 184.84312 * 21 19 17 33 33 H 1.08996 * 109.21759 * 45.35316 * 22 21 19 34 34 H 1.09009 * 109.21093 * 164.72904 * 22 21 19 35 35 H 1.09001 * 109.04981 * 165.67336 * 23 22 21 36 36 H 1.08997 * 109.05555 * 284.57914 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 8 3.4227 -3.4230 -0.0001 12 7 1.7809 -4.9153 -0.0011 13 6 2.6866 -5.9788 0.1106 14 6 2.4290 -7.1805 -0.5410 15 6 3.3149 -8.2348 -0.4407 16 6 4.4689 -8.1005 0.3128 17 6 4.7321 -6.8918 0.9763 18 6 3.8356 -5.8307 0.8700 19 6 5.9641 -6.7713 1.7795 20 8 5.9252 -6.3209 2.9082 21 7 7.1391 -7.1713 1.2367 22 6 7.1780 -7.6102 -0.1594 23 6 6.5740 -9.0006 -0.3047 24 8 5.3564 -9.1221 0.4179 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6245 -2.5571 0.8896 28 1 0.8306 -5.0936 -0.0787 29 1 1.5302 -7.2894 -1.1297 30 1 3.1073 -9.1647 -0.9494 31 1 4.0350 -4.8982 1.3771 32 1 7.9496 -7.1671 1.7697 33 1 6.6129 -6.9078 -0.7721 34 1 8.2132 -7.6313 -0.5001 35 1 6.3816 -9.1965 -1.3596 36 1 7.2844 -9.7380 0.0690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143188248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:24 Heat of formation + Delta-G solvation = -76.879502 kcal Electronic energy + Delta-G solvation = -22572.336205 eV Core-core repulsion = 19021.898972 eV Total energy + Delta-G solvation = -3550.437233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13948 -39.57950 -38.48651 -37.34878 -35.09510 -33.97206 -33.03249 -31.24462 -30.36322 -29.27602 -27.84381 -24.82583 -24.16119 -23.25830 -21.80277 -20.60105 -19.88318 -18.07127 -17.70041 -17.19324 -16.67449 -16.32823 -16.15756 -15.67352 -15.47399 -14.73568 -14.58547 -14.46570 -14.08743 -13.69422 -13.54522 -13.34653 -12.93957 -12.80859 -12.39659 -12.17434 -11.98051 -11.57695 -11.35346 -10.86818 -10.73833 -10.62209 -10.05083 -9.99937 -9.89134 -9.38860 -9.29062 -9.12732 -8.83229 -8.49583 -7.85200 -6.12666 -4.13204 0.80513 1.21977 2.59940 2.91563 3.25620 3.34421 3.36805 3.40901 3.48058 3.57818 3.82498 4.32172 4.43533 4.47213 4.53372 4.79078 4.98471 5.03819 5.14428 5.25988 5.33409 5.37639 5.41298 5.73694 5.80742 6.03253 6.22688 6.34135 6.41304 6.65970 6.89463 6.97156 7.06480 7.18909 7.32725 7.77100 7.90511 8.06023 8.22436 8.89860 8.97216 9.52302 10.99505 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.024238 B = 0.003816 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.911205 B = 7336.215157 C = 8026.086823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.008 3.992 10 C 0.514 3.486 11 O -0.521 6.521 12 N -0.689 5.689 13 C 0.159 3.841 14 C -0.121 4.121 15 C -0.112 4.112 16 C 0.092 3.908 17 C -0.142 4.142 18 C -0.060 4.060 19 C 0.577 3.423 20 O -0.523 6.523 21 N -0.725 5.725 22 C 0.072 3.928 23 C 0.045 3.955 24 O -0.323 6.323 25 H 0.263 0.737 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.411 0.589 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.405 0.595 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.861 -19.991 -3.952 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.032 4.032 10 C 0.305 3.695 11 O -0.395 6.395 12 N -0.336 5.336 13 C 0.063 3.937 14 C -0.142 4.142 15 C -0.131 4.131 16 C 0.047 3.953 17 C -0.146 4.146 18 C -0.081 4.081 19 C 0.365 3.635 20 O -0.398 6.398 21 N -0.379 5.379 22 C -0.054 4.054 23 C -0.031 4.031 24 O -0.239 6.239 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.247 0.753 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.242 0.758 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.328 -19.496 -3.344 21.870 hybrid contribution 0.299 0.845 -0.091 0.901 sum 9.627 -18.652 -3.435 21.269 Atomic orbital electron populations 1.69941 1.06053 1.27222 1.50655 1.24990 0.94924 0.99535 0.94957 0.86459 0.79392 0.82125 0.78934 1.20088 1.21275 1.20030 1.21084 0.94231 0.88951 1.50905 0.90649 1.19286 0.93968 0.89973 0.99936 1.22414 0.91550 0.82924 0.72592 1.90569 1.17925 1.84121 1.46870 1.44258 1.09756 1.05165 1.74396 1.17841 0.92005 0.88594 0.95222 1.20986 1.00953 0.92391 0.99843 1.20816 0.94402 0.99352 0.98538 1.18577 0.91943 0.87228 0.97551 1.20074 0.97347 0.95296 1.01913 1.21100 0.92475 0.98634 0.95878 1.18355 0.83446 0.75879 0.85850 1.90841 1.86132 1.43904 1.18911 1.45826 1.10570 1.68287 1.13248 1.22021 1.03637 0.96330 0.83409 1.23148 0.85188 0.97752 0.96982 1.85917 1.27533 1.40693 1.69758 0.92705 0.92996 0.92820 0.75290 0.84622 0.84525 0.83250 0.75793 0.89971 0.87981 0.91358 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.50 8.92 -34.44 -0.31 -14.81 16 8 H 0.08 2.22 6.75 -52.49 -0.35 1.87 16 9 C 0.01 0.18 5.46 -29.03 -0.16 0.02 16 10 C 0.51 11.13 7.56 -10.98 -0.08 11.05 16 11 O -0.52 -12.91 13.15 5.55 0.07 -12.84 16 12 N -0.69 -11.35 5.35 -9.84 -0.05 -11.40 16 13 C 0.16 2.50 6.28 -83.64 -0.53 1.97 16 14 C -0.12 -1.44 9.94 -39.32 -0.39 -1.83 16 15 C -0.11 -1.26 9.99 -39.55 -0.40 -1.65 16 16 C 0.09 1.20 5.53 -38.69 -0.21 0.99 16 17 C -0.14 -2.24 4.83 -104.89 -0.51 -2.74 16 18 C -0.06 -1.06 8.38 -39.07 -0.33 -1.38 16 19 C 0.58 9.31 7.25 -12.14 -0.09 9.23 16 20 O -0.52 -10.40 17.92 5.29 0.09 -10.30 16 21 N -0.72 -8.15 5.43 -61.60 -0.33 -8.49 16 22 C 0.07 0.57 6.29 -4.46 -0.03 0.54 16 23 C 0.05 0.34 6.97 36.80 0.26 0.60 16 24 O -0.32 -3.76 9.90 -18.90 -0.19 -3.95 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.41 5.33 8.82 -40.82 -0.36 4.97 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.15 3.12 6.42 -52.49 -0.34 2.79 16 32 H 0.41 3.72 8.95 -40.82 -0.37 3.36 16 33 H 0.08 0.78 7.45 -51.93 -0.39 0.40 16 34 H 0.10 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -35.50 312.27 -6.75 -42.25 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.90 Total: 4.76 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.87 Total: 3.48 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.35 Total: -44.97 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.02 Total: -27.09 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.50 -6.75 -42.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.631 kcal (2) G-P(sol) polarization free energy of solvation -35.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds