Wall clock time and date at job start Tue Mar 31 2020 08:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48500 * 109.47073 * 239.99570 * 3 2 1 5 5 H 1.48497 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46980 * 120.00159 * 3 2 1 7 7 C 1.37874 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00479 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46923 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99662 * 0.02562 * 10 9 7 12 12 N 1.34773 * 119.99852 * 180.02562 * 10 9 7 13 13 C 1.40131 * 120.00108 * 185.27789 * 12 10 9 14 14 C 1.39102 * 119.90959 * 213.35087 * 13 12 10 15 15 C 1.38075 * 120.45498 * 179.88028 * 14 13 12 16 16 C 1.38481 * 120.00898 * 0.02562 * 15 14 13 17 17 C 1.40376 * 119.79877 * 0.18737 * 16 15 14 18 18 C 1.38523 * 119.90915 * 33.38056 * 13 12 10 19 19 C 1.47557 * 118.95579 * 179.70291 * 17 16 15 20 20 O 1.21582 * 120.58968 * 227.85577 * 19 17 16 21 21 N 1.35477 * 118.81396 * 47.87161 * 19 17 16 22 22 C 1.46403 * 119.57627 * 4.82926 * 21 19 17 23 23 C 1.52291 * 110.74348 * 285.03813 * 22 21 19 24 24 O 1.35731 * 120.93673 * 180.38758 * 16 15 14 25 25 H 0.97005 * 119.99678 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46773 * 60.00771 * 9 7 2 27 27 H 1.08994 * 109.47345 * 300.00424 * 9 7 2 28 28 H 0.97000 * 119.99664 * 5.27844 * 12 10 9 29 29 H 1.07999 * 119.77392 * 359.90688 * 14 13 12 30 30 H 1.08000 * 119.99835 * 179.97438 * 15 14 13 31 31 H 1.08002 * 120.18960 * 0.05778 * 18 13 12 32 32 H 0.97002 * 120.21507 * 184.84312 * 21 19 17 33 33 H 1.08996 * 109.21759 * 45.35316 * 22 21 19 34 34 H 1.09009 * 109.21093 * 164.72904 * 22 21 19 35 35 H 1.09001 * 109.04981 * 165.67336 * 23 22 21 36 36 H 1.08997 * 109.05555 * 284.57914 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 8 3.4227 -3.4230 -0.0001 12 7 1.7809 -4.9153 -0.0011 13 6 2.6866 -5.9788 0.1106 14 6 2.4290 -7.1805 -0.5410 15 6 3.3149 -8.2348 -0.4407 16 6 4.4689 -8.1005 0.3128 17 6 4.7321 -6.8918 0.9763 18 6 3.8356 -5.8307 0.8700 19 6 5.9641 -6.7713 1.7795 20 8 5.9252 -6.3209 2.9082 21 7 7.1391 -7.1713 1.2367 22 6 7.1780 -7.6102 -0.1594 23 6 6.5740 -9.0006 -0.3047 24 8 5.3564 -9.1221 0.4179 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6245 -2.5571 0.8896 28 1 0.8306 -5.0936 -0.0787 29 1 1.5302 -7.2894 -1.1297 30 1 3.1073 -9.1647 -0.9494 31 1 4.0350 -4.8982 1.3771 32 1 7.9496 -7.1671 1.7697 33 1 6.6129 -6.9078 -0.7721 34 1 8.2132 -7.6313 -0.5001 35 1 6.3816 -9.1965 -1.3596 36 1 7.2844 -9.7380 0.0690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143188248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:24 Heat of formation + Delta-G solvation = -105.199126 kcal Electronic energy + Delta-G solvation = -22573.564236 eV Core-core repulsion = 19021.898972 eV Total energy + Delta-G solvation = -3551.665264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.20344 -41.02286 -39.63081 -38.58266 -36.12621 -35.36292 -35.15004 -32.32297 -31.69628 -30.67688 -29.12058 -25.99113 -25.83341 -24.42396 -22.87576 -21.71409 -21.42303 -19.07823 -18.91742 -18.47872 -18.23454 -17.73575 -17.37861 -16.82895 -16.69597 -16.42782 -16.15062 -15.63396 -15.27337 -14.88433 -14.85107 -14.60837 -14.23514 -14.08870 -13.85526 -13.43535 -13.18830 -12.98009 -12.84206 -12.61486 -12.45463 -12.06981 -11.70414 -11.51257 -11.19128 -11.07489 -10.66994 -10.64662 -10.24733 -10.10905 -9.06348 -8.28288 -6.35432 -0.28181 0.11072 1.38727 1.40710 1.41301 1.49621 1.67073 2.01218 2.21163 2.40134 2.44243 2.74839 3.07687 3.33895 3.74459 3.84618 3.93271 4.04730 4.17696 4.28213 4.37279 4.49090 4.61213 4.74321 4.80374 4.82552 5.01256 5.14809 5.19181 5.22706 5.30737 5.65911 5.72896 5.77485 5.87757 5.99723 6.41595 6.54843 6.77066 6.96620 7.25099 7.36854 8.83492 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.024238 B = 0.003816 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.911205 B = 7336.215157 C = 8026.086823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.011 3.989 10 C 0.518 3.482 11 O -0.561 6.561 12 N -0.668 5.668 13 C 0.131 3.869 14 C -0.093 4.093 15 C -0.099 4.099 16 C 0.109 3.891 17 C -0.164 4.164 18 C -0.087 4.087 19 C 0.564 3.436 20 O -0.580 6.580 21 N -0.710 5.710 22 C 0.064 3.936 23 C 0.039 3.961 24 O -0.335 6.335 25 H 0.268 0.732 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.429 0.571 29 H 0.177 0.823 30 H 0.182 0.818 31 H 0.101 0.899 32 H 0.415 0.585 33 H 0.065 0.935 34 H 0.146 0.854 35 H 0.098 0.902 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.184 -22.761 -6.075 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.028 4.028 10 C 0.309 3.691 11 O -0.438 6.438 12 N -0.316 5.316 13 C 0.036 3.964 14 C -0.113 4.113 15 C -0.118 4.118 16 C 0.064 3.936 17 C -0.168 4.168 18 C -0.109 4.109 19 C 0.352 3.648 20 O -0.460 6.460 21 N -0.363 5.363 22 C -0.060 4.060 23 C -0.035 4.035 24 O -0.251 6.251 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.268 0.732 29 H 0.194 0.806 30 H 0.199 0.801 31 H 0.119 0.881 32 H 0.253 0.747 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.116 0.884 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.656 -22.344 -5.512 24.957 hybrid contribution 0.299 1.519 0.527 1.635 sum 9.954 -20.825 -4.985 23.614 Atomic orbital electron populations 1.70004 1.06989 1.28251 1.50838 1.25719 0.95834 1.02543 0.94389 0.85559 0.78438 0.78595 0.78806 1.19603 1.19685 1.20225 1.21312 0.93641 0.91270 1.51681 0.92813 1.19102 0.94061 0.90075 0.99592 1.21808 0.90277 0.84289 0.72740 1.90555 1.19170 1.85078 1.49028 1.43723 1.10929 1.03815 1.73124 1.17991 0.91626 0.89648 0.97089 1.21371 1.01851 0.90250 0.97856 1.21275 0.92677 1.00506 0.97334 1.18735 0.92815 0.86045 0.96013 1.20115 0.97199 0.96296 1.03215 1.20809 0.94646 0.97779 0.97621 1.18721 0.85039 0.75649 0.85358 1.90792 1.87172 1.46798 1.21285 1.45822 1.09391 1.66400 1.14676 1.22374 1.06327 0.96371 0.80893 1.23507 0.83787 0.97684 0.98536 1.85883 1.28757 1.39693 1.70809 0.92263 0.92772 0.93459 0.73197 0.80553 0.80116 0.88089 0.74678 0.91614 0.83579 0.88372 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.35 13.29 21.45 0.28 -53.07 16 2 C 0.01 0.82 5.46 84.65 0.46 1.28 16 3 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.54 -31.74 8.92 25.60 0.23 -31.51 16 8 H 0.05 3.33 6.75 -2.91 -0.02 3.31 16 9 C 0.01 0.56 5.46 29.11 0.16 0.72 16 10 C 0.52 23.50 7.56 87.66 0.66 24.16 16 11 O -0.56 -29.69 13.15 -3.07 -0.04 -29.73 16 12 N -0.67 -22.22 5.35 -303.42 -1.62 -23.84 16 13 C 0.13 4.08 6.28 38.09 0.24 4.32 16 14 C -0.09 -1.90 9.94 22.44 0.22 -1.68 16 15 C -0.10 -1.80 9.99 22.29 0.22 -1.58 16 16 C 0.11 2.60 5.53 22.85 0.13 2.73 16 17 C -0.16 -5.28 4.83 -20.04 -0.10 -5.37 16 18 C -0.09 -3.27 8.38 22.60 0.19 -3.08 16 19 C 0.56 19.06 7.25 86.59 0.63 19.69 16 20 O -0.58 -24.96 17.92 -3.97 -0.07 -25.04 16 21 N -0.71 -15.60 5.43 -466.66 -2.54 -18.13 16 22 C 0.06 0.86 6.29 86.16 0.54 1.40 16 23 C 0.04 0.43 6.97 71.75 0.50 0.93 16 24 O -0.33 -6.66 9.90 -90.54 -0.90 -7.56 16 25 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 26 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.43 10.74 8.82 -92.71 -0.82 9.93 16 29 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.10 4.74 6.42 -2.91 -0.02 4.72 16 32 H 0.42 7.38 8.95 -92.71 -0.83 6.55 16 33 H 0.07 1.15 7.45 -2.39 -0.02 1.13 16 34 H 0.15 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -83.78 312.27 0.73 -83.05 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.50 Total: 14.81 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 4.09 Total: 12.01 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -3.87 Total: -95.04 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: -1.01 Total: -62.32 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -83.78 0.73 -83.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.149 kcal (2) G-P(sol) polarization free energy of solvation -83.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds