Wall clock time and date at job start Tue Mar 31 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48492 * 109.47350 * 269.99731 * 3 2 1 5 5 H 1.48507 * 109.47139 * 30.00208 * 3 2 1 6 6 H 1.48499 * 109.47066 * 149.99597 * 3 2 1 7 7 C 1.37875 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.47037 * 179.97438 * 9 7 2 11 11 O 1.21261 * 120.00565 * 359.97438 * 10 9 7 12 12 N 1.34782 * 120.00175 * 179.97438 * 10 9 7 13 13 C 1.38702 * 120.00200 * 175.53844 * 12 10 9 14 14 N 1.30755 * 119.99959 * 6.53810 * 13 12 10 15 15 C 1.46657 * 119.99814 * 186.53466 * 13 12 10 16 16 C 1.38208 * 126.74177 * 173.01126 * 15 13 12 17 17 N 1.32553 * 108.24169 * 180.02562 * 16 15 13 18 18 C 1.33103 * 109.71792 * 359.97438 * 17 16 15 19 19 C 1.40719 * 131.83751 * 179.97438 * 18 17 16 20 20 C 1.36204 * 119.42096 * 180.02562 * 19 18 17 21 21 C 1.40395 * 119.63055 * 0.02562 * 20 19 18 22 22 F 1.35102 * 119.94596 * 180.02562 * 21 20 19 23 23 C 1.35378 * 120.11213 * 359.97438 * 21 20 19 24 24 N 1.36190 * 120.59105 * 359.97438 * 23 21 20 25 25 H 0.97007 * 120.00470 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47172 * 59.99292 * 9 7 2 27 27 H 1.08998 * 109.47044 * 299.99601 * 9 7 2 28 28 H 0.97003 * 120.00049 * 355.54371 * 12 10 9 29 29 H 0.97002 * 120.00377 * 7.67865 * 14 13 12 30 30 H 1.08006 * 125.88152 * 359.97438 * 16 15 13 31 31 H 1.07995 * 120.28913 * 0.05364 * 19 18 17 32 32 H 1.07994 * 120.18227 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.70038 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 8 3.4226 -3.4230 0.0001 12 7 1.7812 -4.9152 0.0011 13 6 2.6791 -5.9683 -0.0924 14 7 3.9653 -5.7363 -0.0521 15 6 2.1858 -7.3419 -0.2362 16 6 2.9447 -8.4721 -0.4747 17 7 2.1281 -9.5143 -0.5388 18 6 0.8727 -9.1132 -0.3523 19 6 -0.3444 -9.8192 -0.3278 20 6 -1.5063 -9.1421 -0.1121 21 6 -1.4740 -7.7520 0.0819 22 9 -2.6227 -7.0741 0.2969 23 6 -0.2935 -7.0898 0.0549 24 7 0.8725 -7.7601 -0.1592 25 1 -0.4851 0.8401 0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 0.8299 -5.0934 0.0667 29 1 4.2914 -4.8463 0.1540 30 1 4.0182 -8.5011 -0.5898 31 1 -0.3569 -10.8885 -0.4782 32 1 -2.4473 -9.6716 -0.0904 33 1 -0.2764 -6.0203 0.2045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:33 Heat of formation + Delta-G solvation = 52.692153 kcal Electronic energy + Delta-G solvation = -21939.300513 eV Core-core repulsion = 18303.314374 eV Total energy + Delta-G solvation = -3635.986138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.43986 -43.15630 -40.01047 -37.56251 -35.93549 -33.97709 -33.27602 -32.33376 -30.19480 -29.16232 -28.93206 -25.07474 -24.24868 -23.52721 -22.64574 -20.96770 -20.14595 -18.69837 -18.20430 -17.22809 -16.73228 -16.60386 -16.53950 -15.81023 -15.63088 -15.12626 -14.91361 -14.82661 -14.60646 -14.36022 -13.91744 -13.47908 -13.26748 -12.46408 -12.34653 -12.07938 -11.92054 -11.52177 -11.16383 -10.96439 -10.80132 -10.56115 -10.49649 -10.10225 -9.51306 -9.19654 -8.94620 -8.60678 -8.55480 -8.02011 -6.24085 -4.25996 0.14544 0.47852 1.86939 1.96584 2.77577 3.03732 3.04465 3.25180 3.31163 3.38388 3.48295 3.52851 3.76716 3.90523 4.15492 4.30065 4.34521 4.84682 5.02257 5.14670 5.15001 5.18394 5.36516 5.42332 5.60777 5.87187 6.15015 6.25277 6.38261 6.53522 6.85247 6.98295 7.43760 7.56014 7.78027 8.01419 8.41775 8.66053 8.84342 9.40411 10.87888 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.004088 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.184123 B = 6848.160387 C = 8164.424572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.077 0.923 9 C 0.005 3.995 10 C 0.521 3.479 11 O -0.517 6.517 12 N -0.714 5.714 13 C 0.450 3.550 14 N -0.697 5.697 15 C -0.033 4.033 16 C 0.117 3.883 17 N -0.482 5.482 18 C 0.218 3.782 19 C -0.040 4.040 20 C -0.131 4.131 21 C 0.099 3.901 22 F -0.114 7.114 23 C 0.010 3.990 24 N -0.336 5.336 25 H 0.265 0.735 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.394 0.606 29 H 0.381 0.619 30 H 0.200 0.800 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.049 -19.384 0.064 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.556 4.556 8 H 0.096 0.904 9 C -0.034 4.034 10 C 0.313 3.687 11 O -0.389 6.389 12 N -0.368 5.368 13 C 0.169 3.831 14 N -0.345 5.345 15 C -0.148 4.148 16 C -0.042 4.042 17 N -0.201 5.201 18 C -0.023 4.023 19 C -0.060 4.060 20 C -0.156 4.156 21 C 0.076 3.924 22 F -0.092 7.092 23 C -0.116 4.116 24 N -0.007 5.007 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.232 0.768 29 H 0.218 0.782 30 H 0.217 0.783 31 H 0.185 0.815 32 H 0.178 0.822 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.263 -20.188 -0.190 20.634 hybrid contribution -1.154 2.789 0.361 3.039 sum -5.417 -17.400 0.171 18.224 Atomic orbital electron populations 1.69938 1.06098 1.27358 1.50202 1.24998 0.94961 0.99671 0.94683 0.86360 0.79831 0.82211 0.78340 1.20437 1.21088 1.19540 1.21067 0.94294 0.88698 1.51526 0.90439 1.19367 0.93918 0.89990 1.00125 1.22553 0.91546 0.82583 0.71970 1.90171 1.17724 1.83770 1.47273 1.45342 1.10955 1.07367 1.73171 1.19335 0.86572 0.83477 0.93680 1.69619 1.08750 1.37797 1.18379 1.19437 0.80436 0.94244 1.20653 1.23054 1.00157 0.84792 0.96168 1.70649 0.97418 1.29820 1.22231 1.20995 0.95543 0.79962 1.05779 1.20232 0.86767 1.01150 0.97828 1.21162 1.00410 0.91848 1.02133 1.16608 0.81395 0.90300 1.04094 1.91614 1.45704 1.79764 1.92144 1.21301 0.83768 0.99328 1.07154 1.42244 1.05302 1.09629 1.43575 0.92591 0.92627 0.92685 0.76751 0.78225 0.78283 0.81518 0.82239 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 13.29 55.43 0.74 -24.37 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.25 8.92 -34.44 -0.31 -14.55 16 8 H 0.08 2.22 6.75 -52.49 -0.35 1.86 16 9 C 0.01 0.12 5.46 -29.04 -0.16 -0.04 16 10 C 0.52 11.17 7.78 -10.99 -0.09 11.09 16 11 O -0.52 -12.45 12.35 5.57 0.07 -12.38 16 12 N -0.71 -12.15 5.37 -9.92 -0.05 -12.21 16 13 C 0.45 7.63 7.79 -153.63 -1.20 6.43 16 14 N -0.70 -13.09 13.59 32.45 0.44 -12.65 16 15 C -0.03 -0.48 7.01 -81.68 -0.57 -1.05 16 16 C 0.12 1.56 11.65 -17.25 -0.20 1.36 16 17 N -0.48 -6.24 11.26 -12.28 -0.14 -6.38 16 18 C 0.22 2.49 7.77 -156.03 -1.21 1.28 16 19 C -0.04 -0.30 10.10 -39.38 -0.40 -0.70 16 20 C -0.13 -0.86 10.05 -39.50 -0.40 -1.26 16 21 C 0.10 0.87 7.26 -39.79 -0.29 0.58 16 22 F -0.11 -1.07 17.26 2.25 0.04 -1.03 16 23 C 0.01 0.10 10.38 -16.64 -0.17 -0.07 16 24 N -0.34 -4.11 2.96 -58.72 -0.17 -4.28 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.39 5.51 4.90 -40.82 -0.20 5.31 16 29 H 0.38 7.99 5.10 -43.60 -0.22 7.77 16 30 H 0.20 2.31 8.06 -52.48 -0.42 1.88 16 31 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.17 1.69 5.02 -52.49 -0.26 1.43 16 LS Contribution 297.11 15.07 4.48 4.48 Total: -1.00 -31.99 297.11 -7.00 -38.99 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.29 Total: 8.91 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -5.09 Total: 4.58 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.81 Total: -59.88 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.99 -7.00 -38.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.686 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds