Wall clock time and date at job start Tue Mar 31 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48492 * 109.47350 * 269.99731 * 3 2 1 5 5 H 1.48507 * 109.47139 * 30.00208 * 3 2 1 6 6 H 1.48499 * 109.47066 * 149.99597 * 3 2 1 7 7 C 1.37875 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.47037 * 179.97438 * 9 7 2 11 11 O 1.21261 * 120.00565 * 359.97438 * 10 9 7 12 12 N 1.34782 * 120.00175 * 179.97438 * 10 9 7 13 13 C 1.38702 * 120.00200 * 175.53844 * 12 10 9 14 14 N 1.30755 * 119.99959 * 6.53810 * 13 12 10 15 15 C 1.46657 * 119.99814 * 186.53466 * 13 12 10 16 16 C 1.38208 * 126.74177 * 173.01126 * 15 13 12 17 17 N 1.32553 * 108.24169 * 180.02562 * 16 15 13 18 18 C 1.33103 * 109.71792 * 359.97438 * 17 16 15 19 19 C 1.40719 * 131.83751 * 179.97438 * 18 17 16 20 20 C 1.36204 * 119.42096 * 180.02562 * 19 18 17 21 21 C 1.40395 * 119.63055 * 0.02562 * 20 19 18 22 22 F 1.35102 * 119.94596 * 180.02562 * 21 20 19 23 23 C 1.35378 * 120.11213 * 359.97438 * 21 20 19 24 24 N 1.36190 * 120.59105 * 359.97438 * 23 21 20 25 25 H 0.97007 * 120.00470 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47172 * 59.99292 * 9 7 2 27 27 H 1.08998 * 109.47044 * 299.99601 * 9 7 2 28 28 H 0.97003 * 120.00049 * 355.54371 * 12 10 9 29 29 H 0.97002 * 120.00377 * 7.67865 * 14 13 12 30 30 H 1.08006 * 125.88152 * 359.97438 * 16 15 13 31 31 H 1.07995 * 120.28913 * 0.05364 * 19 18 17 32 32 H 1.07994 * 120.18227 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.70038 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 8 3.4226 -3.4230 0.0001 12 7 1.7812 -4.9152 0.0011 13 6 2.6791 -5.9683 -0.0924 14 7 3.9653 -5.7363 -0.0521 15 6 2.1858 -7.3419 -0.2362 16 6 2.9447 -8.4721 -0.4747 17 7 2.1281 -9.5143 -0.5388 18 6 0.8727 -9.1132 -0.3523 19 6 -0.3444 -9.8192 -0.3278 20 6 -1.5063 -9.1421 -0.1121 21 6 -1.4740 -7.7520 0.0819 22 9 -2.6227 -7.0741 0.2969 23 6 -0.2935 -7.0898 0.0549 24 7 0.8725 -7.7601 -0.1592 25 1 -0.4851 0.8401 0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 0.8299 -5.0934 0.0667 29 1 4.2914 -4.8463 0.1540 30 1 4.0182 -8.5011 -0.5898 31 1 -0.3569 -10.8885 -0.4782 32 1 -2.4473 -9.6716 -0.0904 33 1 -0.2764 -6.0203 0.2045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:33 Heat of formation + Delta-G solvation = 32.384333 kcal Electronic energy + Delta-G solvation = -21940.181126 eV Core-core repulsion = 18303.314374 eV Total energy + Delta-G solvation = -3636.866751 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.20597 -44.06421 -41.63189 -38.39014 -37.42733 -35.31454 -34.80487 -33.89210 -31.07800 -30.88532 -30.03968 -26.54275 -25.46806 -24.62574 -23.71510 -22.07957 -21.70999 -19.84726 -18.99615 -18.67879 -18.29358 -17.59789 -17.52703 -17.29137 -16.71765 -16.60133 -16.33877 -16.11850 -15.68453 -15.30443 -15.05841 -14.74955 -14.28999 -14.19128 -13.99287 -13.24584 -12.91611 -12.83553 -12.81575 -12.67542 -12.20099 -12.02627 -11.96224 -11.56985 -11.49589 -10.71578 -10.52960 -10.16351 -9.88159 -9.01150 -8.33749 -6.42177 -0.58896 -0.41204 0.76475 1.00294 1.37821 1.38676 1.39672 1.49801 1.63975 2.11482 2.24217 2.37243 2.71133 2.97703 2.99832 3.02729 3.33380 3.58203 3.86611 3.96041 4.15750 4.22083 4.41256 4.74622 4.75123 4.80027 4.87285 4.96104 5.04948 5.26069 5.29229 5.64251 5.67032 5.86458 6.23501 6.50850 6.68868 6.82568 7.09800 7.27744 8.77980 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.004088 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.184123 B = 6848.160387 C = 8164.424572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.017 3.983 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.009 3.991 10 C 0.526 3.474 11 O -0.546 6.546 12 N -0.697 5.697 13 C 0.458 3.542 14 N -0.721 5.721 15 C -0.071 4.071 16 C 0.125 3.875 17 N -0.502 5.502 18 C 0.220 3.780 19 C -0.037 4.037 20 C -0.105 4.105 21 C 0.112 3.888 22 F -0.115 7.115 23 C -0.017 4.017 24 N -0.336 5.336 25 H 0.270 0.730 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.409 0.591 29 H 0.369 0.631 30 H 0.207 0.793 31 H 0.204 0.796 32 H 0.203 0.797 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -21.166 -0.013 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.183 4.183 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.030 4.030 10 C 0.318 3.682 11 O -0.421 6.421 12 N -0.352 5.352 13 C 0.179 3.821 14 N -0.367 5.367 15 C -0.185 4.185 16 C -0.035 4.035 17 N -0.221 5.221 18 C -0.021 4.021 19 C -0.057 4.057 20 C -0.130 4.130 21 C 0.089 3.911 22 F -0.093 7.093 23 C -0.143 4.143 24 N -0.007 5.007 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.250 0.750 29 H 0.202 0.798 30 H 0.224 0.776 31 H 0.221 0.779 32 H 0.220 0.780 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.356 -22.008 -0.268 22.909 hybrid contribution -0.746 3.198 0.393 3.308 sum -7.103 -18.810 0.125 20.106 Atomic orbital electron populations 1.69997 1.07037 1.28392 1.50399 1.25723 0.95838 1.02627 0.94130 0.85454 0.78501 0.78585 0.78576 1.19760 1.19808 1.19908 1.21284 0.93823 0.90795 1.52290 0.92291 1.19195 0.93963 0.89864 0.99964 1.22080 0.90567 0.83586 0.71994 1.90182 1.18633 1.84541 1.48707 1.45059 1.12050 1.06140 1.71964 1.19689 0.86013 0.84358 0.92080 1.69615 1.09720 1.36597 1.20797 1.19071 0.81840 0.92902 1.24639 1.23224 1.00653 0.84664 0.94989 1.70669 0.98124 1.29612 1.23710 1.21744 0.96420 0.79806 1.04159 1.20749 0.85141 1.02719 0.97052 1.21624 1.01860 0.90433 0.99037 1.16856 0.80558 0.91299 1.02346 1.91626 1.45627 1.80085 1.91957 1.21417 0.84086 0.99584 1.09179 1.42225 1.04905 1.10054 1.43473 0.92140 0.92798 0.92596 0.74976 0.79799 0.77616 0.77919 0.77955 0.81511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.42 13.29 21.45 0.28 -51.13 16 2 C 0.02 0.91 5.46 84.65 0.46 1.37 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -30.62 8.92 25.60 0.23 -30.39 16 8 H 0.06 3.49 6.75 -2.91 -0.02 3.47 16 9 C 0.01 0.46 5.46 29.10 0.16 0.62 16 10 C 0.53 23.30 7.78 87.65 0.68 23.98 16 11 O -0.55 -27.40 12.35 -2.97 -0.04 -27.43 16 12 N -0.70 -24.34 5.37 -303.69 -1.63 -25.97 16 13 C 0.46 15.96 7.79 135.63 1.06 17.02 16 14 N -0.72 -28.24 13.59 -51.25 -0.70 -28.93 16 15 C -0.07 -2.03 7.01 40.36 0.28 -1.75 16 16 C 0.12 3.30 11.65 84.58 0.99 4.29 16 17 N -0.50 -12.35 11.26 -192.76 -2.17 -14.52 16 18 C 0.22 4.53 7.77 134.02 1.04 5.58 16 19 C -0.04 -0.40 10.10 22.40 0.23 -0.17 16 20 C -0.11 -0.87 10.05 22.32 0.22 -0.65 16 21 C 0.11 1.63 7.26 22.13 0.16 1.79 16 22 F -0.11 -1.83 17.26 44.97 0.78 -1.05 16 23 C -0.02 -0.34 10.38 83.36 0.87 0.53 16 24 N -0.34 -7.85 2.96 -339.68 -1.00 -8.86 16 25 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 26 H 0.05 2.61 8.14 -2.39 -0.02 2.60 16 27 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.41 11.62 4.90 -92.71 -0.45 11.16 16 29 H 0.37 16.22 5.10 -136.77 -0.70 15.53 16 30 H 0.21 4.87 8.06 -2.91 -0.02 4.85 16 31 H 0.20 0.74 8.06 -2.91 -0.02 0.72 16 32 H 0.20 0.05 8.06 -2.91 -0.02 0.02 16 33 H 0.17 3.25 5.02 -2.91 -0.01 3.24 16 Total: -1.00 -70.40 297.11 3.98 -66.42 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.06 Total: 23.33 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.38 Total: 22.22 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -5.22 Total: -129.41 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.04 Total: -27.43 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.40 3.98 -66.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.801 kcal (2) G-P(sol) polarization free energy of solvation -70.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds