Wall clock time and date at job start Tue Mar 31 2020 07:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33318 * 126.81544 * 2 1 4 4 N 1.28505 * 109.44278 * 180.02562 * 3 2 1 5 5 N 1.28717 * 110.64470 * 0.02562 * 4 3 2 6 6 H 0.96998 * 126.03780 * 179.97438 * 5 4 3 7 7 C 1.37029 * 126.81607 * 180.30799 * 2 1 3 8 8 C 1.47203 * 127.19149 * 0.02562 * 7 2 1 9 9 O 1.21628 * 119.99719 * 0.16199 * 8 7 2 10 10 N 1.34770 * 119.99998 * 180.16093 * 8 7 2 11 11 C 1.39919 * 120.00280 * 174.89774 * 10 8 7 12 12 C 1.39399 * 119.90699 * 325.52735 * 11 10 8 13 13 C 1.38363 * 120.46281 * 179.71994 * 12 11 10 14 14 C 1.38014 * 120.28817 * 0.55292 * 13 12 11 15 15 F 1.35105 * 120.08943 * 179.70416 * 14 13 12 16 16 C 1.41004 * 119.82077 * 359.72137 * 14 13 12 17 17 C 1.41292 * 120.23361 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99751 * 25.32425 * 17 16 14 19 19 C 1.39920 * 120.00261 * 205.32859 * 17 16 14 20 20 N 1.30850 * 120.00135 * 16.68754 * 19 17 16 21 21 Si 1.86797 * 120.00014 * 196.68234 * 19 17 16 22 22 H 1.48504 * 109.47168 * 90.00129 * 21 19 17 23 23 H 1.48500 * 109.47575 * 210.00097 * 21 19 17 24 24 H 1.48509 * 109.47163 * 330.00409 * 21 19 17 25 25 C 1.38163 * 119.91783 * 145.79710 * 11 10 8 26 26 H 1.09004 * 109.46855 * 89.97398 * 1 2 3 27 27 H 1.08996 * 109.47223 * 209.97118 * 1 2 3 28 28 H 1.08996 * 109.47412 * 329.98064 * 1 2 3 29 29 H 0.97003 * 120.00022 * 354.89946 * 10 8 7 30 30 H 1.07996 * 119.76682 * 359.97438 * 12 11 10 31 31 H 1.07995 * 119.85693 * 180.25019 * 13 12 11 32 32 H 0.97000 * 120.00048 * 179.97438 * 20 19 17 33 33 H 1.08004 * 120.14186 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6836 -0.0005 5 7 3.6058 -0.6015 -0.0015 6 1 4.4215 -1.1264 -0.0023 7 6 2.3282 -1.0970 -0.0059 8 6 1.9226 -2.5120 -0.0140 9 8 0.7425 -2.8063 -0.0191 10 7 2.8589 -3.4814 -0.0159 11 6 2.4766 -4.8236 0.0842 12 6 1.3721 -5.1758 0.8582 13 6 0.9804 -6.4989 0.9605 14 6 1.6873 -7.4867 0.3054 15 9 1.3049 -8.7781 0.4129 16 6 2.8100 -7.1447 -0.4762 17 6 3.5403 -8.1490 -1.1502 18 1 3.0589 -9.0773 -1.4206 19 6 4.8871 -7.9411 -1.4674 20 7 5.5595 -6.9882 -0.8739 21 14 5.7254 -9.0238 -2.7379 22 1 5.5718 -8.4166 -4.0844 23 1 7.1690 -9.1439 -2.4110 24 1 5.1019 -10.3716 -2.7286 25 6 3.1981 -5.7969 -0.5798 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5141 29 1 3.7979 -3.2485 -0.0866 30 1 0.8157 -4.4101 1.3782 31 1 0.1207 -6.7603 1.5596 32 1 6.4933 -6.8443 -1.0935 33 1 4.0562 -5.5239 -1.1762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147575845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:08 Heat of formation + Delta-G solvation = 27.537359 kcal Electronic energy + Delta-G solvation = -22004.072755 eV Core-core repulsion = 18366.995823 eV Total energy + Delta-G solvation = -3637.076932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.33040 -43.49873 -39.84586 -37.31095 -34.84061 -34.03122 -33.44723 -32.42374 -29.95435 -28.79596 -27.54988 -25.53069 -24.37925 -22.67159 -21.85297 -20.99147 -20.20473 -18.98679 -17.76282 -16.82834 -16.61414 -16.19850 -15.87859 -15.33931 -14.82810 -14.56932 -14.14809 -14.05990 -13.85676 -13.14125 -13.11828 -12.79131 -12.77555 -12.21879 -12.00681 -11.87473 -11.67802 -11.39636 -11.27798 -11.20931 -10.84329 -10.69418 -10.41573 -10.01131 -9.82496 -9.48699 -9.38734 -9.23305 -7.77334 -7.22329 -6.93111 -4.61251 0.75367 2.10099 2.27627 2.39674 2.57312 2.95155 2.99401 2.99739 3.11131 3.22385 3.76838 4.14310 4.34757 4.51050 4.78779 4.91068 5.26105 5.57031 5.62059 5.78932 5.80781 5.94944 6.18367 6.31938 6.36632 6.42990 6.62879 6.69071 6.95393 7.25657 7.27794 7.45669 7.69268 7.73352 7.92295 8.11158 8.15513 8.35474 8.53989 8.61734 9.92269 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.004373 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.255497 B = 6400.738422 C = 7570.828355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.058 3.942 3 N -0.272 5.272 4 N -0.049 5.049 5 N -0.375 5.375 6 H 0.452 0.548 7 C -0.064 4.064 8 C 0.587 3.413 9 O -0.494 6.494 10 N -0.655 5.655 11 C 0.137 3.863 12 C -0.205 4.205 13 C -0.110 4.110 14 C -0.028 4.028 15 F -0.161 7.161 16 C 0.098 3.902 17 C -0.450 4.450 18 H 0.086 0.914 19 C 0.077 3.923 20 N -0.794 5.794 21 Si 0.914 3.086 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.259 1.259 25 C -0.162 4.162 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.398 0.602 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.283 0.717 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 8.896 0.469 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 N -0.139 5.139 4 N -0.031 5.031 5 N -0.102 5.102 6 H 0.299 0.701 7 C -0.198 4.198 8 C 0.370 3.630 9 O -0.366 6.366 10 N -0.299 5.299 11 C 0.045 3.955 12 C -0.226 4.226 13 C -0.129 4.129 14 C -0.048 4.048 15 F -0.140 7.140 16 C 0.094 3.906 17 C -0.479 4.479 18 H 0.104 0.896 19 C -0.141 4.141 20 N -0.419 5.419 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.183 1.183 25 C -0.184 4.184 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.233 0.767 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.531 10.122 0.508 10.149 hybrid contribution 1.142 -1.812 -0.539 2.209 sum 0.611 8.310 -0.031 8.333 Atomic orbital electron populations 1.20325 0.84758 1.04430 1.03874 1.22327 0.98651 0.86866 1.00358 1.74922 0.95205 1.26035 1.17691 1.78159 1.16035 0.92305 1.16557 1.45491 1.08964 1.06990 1.48794 0.70132 1.22249 0.84917 0.96688 1.15912 1.16733 0.86315 0.81894 0.78009 1.90853 1.16273 1.81329 1.48167 1.43271 1.09019 1.05717 1.71888 1.17503 0.97943 0.80529 0.99490 1.20096 1.00910 0.95053 1.06569 1.20385 0.99441 0.92330 1.00782 1.17925 1.02239 0.77516 1.07134 1.91285 1.91115 1.36183 1.95441 1.17338 0.90125 0.92812 0.90316 1.19534 0.94682 1.02184 1.31530 0.89603 1.25904 0.97506 0.95483 0.95196 1.69784 1.10097 1.28170 1.33839 0.86194 0.78231 0.81062 0.80699 1.19084 1.20115 1.18310 1.20882 1.03250 0.90811 1.03421 0.89923 0.88584 0.90385 0.76748 0.86977 0.87465 0.90624 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.92 36.01 0.36 -0.49 16 2 C 0.06 0.78 7.30 -82.38 -0.60 0.18 16 3 N -0.27 -3.86 12.35 33.52 0.41 -3.45 16 4 N -0.05 -0.64 13.35 60.35 0.81 0.17 16 5 N -0.38 -4.10 6.98 33.31 0.23 -3.87 16 6 H 0.45 3.26 8.33 -190.33 -1.59 1.68 16 7 C -0.06 -0.85 7.16 -82.34 -0.59 -1.44 16 8 C 0.59 9.25 7.53 -12.62 -0.10 9.16 16 9 O -0.49 -9.12 12.74 5.25 0.07 -9.05 16 10 N -0.66 -10.50 5.33 -10.93 -0.06 -10.55 16 11 C 0.14 2.82 6.25 -83.76 -0.52 2.30 16 12 C -0.21 -4.36 8.65 -39.10 -0.34 -4.70 16 13 C -0.11 -2.41 10.00 -39.62 -0.40 -2.81 16 14 C -0.03 -0.67 7.31 -38.62 -0.28 -0.96 16 15 F -0.16 -3.93 16.72 2.25 0.04 -3.89 16 16 C 0.10 2.46 5.57 -106.78 -0.60 1.87 16 17 C -0.45 -11.36 8.77 -37.79 -0.33 -11.69 16 18 H 0.09 2.16 7.74 -52.48 -0.41 1.76 16 19 C 0.08 1.79 5.16 -17.34 -0.09 1.70 16 20 N -0.79 -18.29 10.94 55.55 0.61 -17.69 16 21 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 16 22 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 23 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 25 C -0.16 -3.72 8.59 -38.70 -0.33 -4.05 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.10 1.17 6.63 -51.93 -0.34 0.82 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.40 5.02 8.09 -40.82 -0.33 4.69 16 30 H 0.11 2.28 6.47 -52.49 -0.34 1.94 16 31 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.28 5.87 8.30 -40.82 -0.34 5.53 16 33 H 0.13 2.97 6.18 -52.48 -0.32 2.65 16 LS Contribution 297.60 15.07 4.48 4.48 Total: -1.00 -28.80 297.60 -5.99 -34.79 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -3.73 Total: 7.55 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.82 Total: -10.92 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 2.00 Total: -35.39 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.80 -5.99 -34.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147575845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.325 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds