Wall clock time and date at job start Tue Mar 31 2020 07:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33318 * 126.81544 * 2 1 4 4 N 1.28505 * 109.44278 * 180.02562 * 3 2 1 5 5 N 1.28717 * 110.64470 * 0.02562 * 4 3 2 6 6 H 0.96998 * 126.03780 * 179.97438 * 5 4 3 7 7 C 1.37029 * 126.81607 * 180.30799 * 2 1 3 8 8 C 1.47203 * 127.19149 * 0.02562 * 7 2 1 9 9 O 1.21628 * 119.99719 * 0.16199 * 8 7 2 10 10 N 1.34770 * 119.99998 * 180.16093 * 8 7 2 11 11 C 1.39919 * 120.00280 * 174.89774 * 10 8 7 12 12 C 1.39399 * 119.90699 * 325.52735 * 11 10 8 13 13 C 1.38363 * 120.46281 * 179.71994 * 12 11 10 14 14 C 1.38014 * 120.28817 * 0.55292 * 13 12 11 15 15 F 1.35105 * 120.08943 * 179.70416 * 14 13 12 16 16 C 1.41004 * 119.82077 * 359.72137 * 14 13 12 17 17 C 1.41292 * 120.23361 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99751 * 25.32425 * 17 16 14 19 19 C 1.39920 * 120.00261 * 205.32859 * 17 16 14 20 20 N 1.30850 * 120.00135 * 16.68754 * 19 17 16 21 21 Si 1.86797 * 120.00014 * 196.68234 * 19 17 16 22 22 H 1.48504 * 109.47168 * 90.00129 * 21 19 17 23 23 H 1.48500 * 109.47575 * 210.00097 * 21 19 17 24 24 H 1.48509 * 109.47163 * 330.00409 * 21 19 17 25 25 C 1.38163 * 119.91783 * 145.79710 * 11 10 8 26 26 H 1.09004 * 109.46855 * 89.97398 * 1 2 3 27 27 H 1.08996 * 109.47223 * 209.97118 * 1 2 3 28 28 H 1.08996 * 109.47412 * 329.98064 * 1 2 3 29 29 H 0.97003 * 120.00022 * 354.89946 * 10 8 7 30 30 H 1.07996 * 119.76682 * 359.97438 * 12 11 10 31 31 H 1.07995 * 119.85693 * 180.25019 * 13 12 11 32 32 H 0.97000 * 120.00048 * 179.97438 * 20 19 17 33 33 H 1.08004 * 120.14186 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6836 -0.0005 5 7 3.6058 -0.6015 -0.0015 6 1 4.4215 -1.1264 -0.0023 7 6 2.3282 -1.0970 -0.0059 8 6 1.9226 -2.5120 -0.0140 9 8 0.7425 -2.8063 -0.0191 10 7 2.8589 -3.4814 -0.0159 11 6 2.4766 -4.8236 0.0842 12 6 1.3721 -5.1758 0.8582 13 6 0.9804 -6.4989 0.9605 14 6 1.6873 -7.4867 0.3054 15 9 1.3049 -8.7781 0.4129 16 6 2.8100 -7.1447 -0.4762 17 6 3.5403 -8.1490 -1.1502 18 1 3.0589 -9.0773 -1.4206 19 6 4.8871 -7.9411 -1.4674 20 7 5.5595 -6.9882 -0.8739 21 14 5.7254 -9.0238 -2.7379 22 1 5.5718 -8.4166 -4.0844 23 1 7.1690 -9.1439 -2.4110 24 1 5.1019 -10.3716 -2.7286 25 6 3.1981 -5.7969 -0.5798 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5141 29 1 3.7979 -3.2485 -0.0866 30 1 0.8157 -4.4101 1.3782 31 1 0.1207 -6.7603 1.5596 32 1 6.4933 -6.8443 -1.0935 33 1 4.0562 -5.5239 -1.1762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147575845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:07 Heat of formation + Delta-G solvation = 8.719873 kcal Electronic energy + Delta-G solvation = -22004.888742 eV Core-core repulsion = 18366.995823 eV Total energy + Delta-G solvation = -3637.892919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.19746 -44.53724 -41.26604 -38.95259 -36.29177 -35.45273 -34.80019 -33.51488 -31.72897 -30.26071 -28.71091 -27.31057 -25.54399 -23.88702 -23.55307 -22.31281 -21.64487 -20.16944 -19.43710 -18.18745 -18.01272 -17.64586 -17.36358 -16.98994 -16.34690 -16.00134 -15.93250 -15.61522 -14.86766 -14.77517 -14.46717 -14.02516 -13.99727 -13.72451 -13.53291 -13.39590 -13.07545 -12.98552 -12.81524 -12.50631 -12.31514 -12.06831 -11.70566 -11.58780 -11.36064 -11.15536 -10.85360 -10.44632 -9.56377 -8.93602 -8.64248 -6.46736 -0.34888 0.63902 0.84180 1.09804 1.33327 1.39279 1.47598 1.50669 1.83373 1.89503 2.18636 2.61646 3.13638 3.40021 3.46720 3.71201 3.88958 4.02281 4.27377 4.58051 4.62279 4.76617 4.81863 4.90892 4.93253 4.96940 5.19519 5.30022 5.54112 5.56450 5.66207 5.72021 5.92919 6.06286 6.32076 6.49547 6.72424 6.76434 6.92578 7.08192 8.21555 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.004373 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.255497 B = 6400.738422 C = 7570.828355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.059 3.941 3 N -0.291 5.291 4 N -0.048 5.048 5 N -0.351 5.351 6 H 0.468 0.532 7 C -0.071 4.071 8 C 0.596 3.404 9 O -0.520 6.520 10 N -0.648 5.648 11 C 0.151 3.849 12 C -0.207 4.207 13 C -0.106 4.106 14 C -0.064 4.064 15 F -0.169 7.169 16 C 0.072 3.928 17 C -0.490 4.490 18 H 0.071 0.929 19 C 0.046 3.954 20 N -0.809 5.809 21 Si 0.981 3.019 22 H -0.259 1.259 23 H -0.262 1.262 24 H -0.267 1.267 25 C -0.174 4.174 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.416 0.584 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.295 0.705 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 10.259 0.193 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 N -0.157 5.157 4 N -0.030 5.030 5 N -0.082 5.082 6 H 0.318 0.682 7 C -0.205 4.205 8 C 0.381 3.619 9 O -0.393 6.393 10 N -0.293 5.293 11 C 0.058 3.942 12 C -0.228 4.228 13 C -0.125 4.125 14 C -0.085 4.085 15 F -0.149 7.149 16 C 0.069 3.931 17 C -0.518 4.518 18 H 0.089 0.911 19 C -0.171 4.171 20 N -0.434 5.434 21 Si 0.802 3.198 22 H -0.183 1.183 23 H -0.186 1.186 24 H -0.191 1.191 25 C -0.196 4.196 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.253 0.747 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.106 0.894 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.359 11.521 0.246 11.529 hybrid contribution 0.866 -2.117 -0.400 2.322 sum 1.225 9.404 -0.153 9.485 Atomic orbital electron populations 1.20399 0.83520 1.04868 1.04584 1.22712 0.99624 0.86628 0.99217 1.74949 0.95527 1.26438 1.18811 1.78120 1.15851 0.92848 1.16142 1.45462 1.09040 1.06519 1.47164 0.68166 1.21774 0.85880 0.95181 1.17651 1.16857 0.85716 0.82491 0.76814 1.90845 1.17402 1.81943 1.49133 1.43119 1.10265 1.04064 1.71900 1.17469 0.96870 0.82150 0.97746 1.20327 1.01053 0.95008 1.06442 1.20654 0.99619 0.92193 1.00071 1.18217 1.03488 0.77809 1.08953 1.91244 1.91237 1.36751 1.95645 1.17702 0.90734 0.93948 0.90749 1.19667 0.96166 1.02216 1.33765 0.91113 1.26590 0.97226 0.96855 0.96445 1.69772 1.10895 1.28701 1.34026 0.85208 0.77568 0.78788 0.78284 1.18313 1.18613 1.19084 1.20847 1.03796 0.90596 1.04313 0.89006 0.89478 0.88563 0.74699 0.85728 0.85240 0.89408 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.92 71.24 0.71 -0.85 16 2 C 0.06 1.46 7.30 42.05 0.31 1.77 16 3 N -0.29 -7.66 12.35 -47.87 -0.59 -8.25 16 4 N -0.05 -1.14 13.35 37.02 0.49 -0.64 16 5 N -0.35 -6.80 6.98 -48.53 -0.34 -7.14 16 6 H 0.47 5.45 8.33 -219.90 -1.83 3.62 16 7 C -0.07 -1.73 7.16 40.40 0.29 -1.44 16 8 C 0.60 17.70 7.53 86.60 0.65 18.35 16 9 O -0.52 -18.41 12.74 -4.12 -0.05 -18.46 16 10 N -0.65 -19.65 5.33 -306.75 -1.63 -21.29 16 11 C 0.15 6.09 6.25 38.11 0.24 6.33 16 12 C -0.21 -8.61 8.65 22.58 0.20 -8.42 16 13 C -0.11 -4.64 10.00 22.25 0.22 -4.42 16 14 C -0.06 -3.21 7.31 22.89 0.17 -3.04 16 15 F -0.17 -8.55 16.72 44.97 0.75 -7.80 16 16 C 0.07 3.73 5.57 -21.26 -0.12 3.61 16 17 C -0.49 -25.41 8.77 23.43 0.21 -25.20 16 18 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 19 C 0.05 2.12 5.16 85.25 0.44 2.56 16 20 N -0.81 -36.91 10.94 21.82 0.24 -36.67 16 21 Si 0.98 35.45 29.59 68.60 2.03 37.48 16 22 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 23 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 24 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 25 C -0.17 -8.00 8.59 22.84 0.20 -7.81 16 26 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.09 1.99 6.63 -2.39 -0.02 1.97 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.42 9.60 8.09 -92.71 -0.75 8.85 16 30 H 0.12 4.87 6.47 -2.91 -0.02 4.85 16 31 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 32 H 0.29 11.87 8.30 -92.71 -0.77 11.11 16 33 H 0.13 5.87 6.18 -2.91 -0.02 5.85 16 Total: -1.00 -61.71 297.60 3.03 -58.68 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -1.37 Total: 22.64 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.50 Total: -18.55 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.83 Total: -73.99 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.05 Total: -18.46 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 0.75 Total: -7.80 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -61.71 3.03 -58.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147575845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.396 kcal (2) G-P(sol) polarization free energy of solvation -61.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds